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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011879 ID=TCONS_00011879|Name=TCONS_00011879|organism=Clytia hemisphaerica|type=transcript|length=1744bp
ATCTTAATCTTTCAAAGCagctaatttttttgaaaaaggccaaaaatttc
atcatttttttctgaaaattttttctttcaaaggcaatttctcaaccagg
acaaacgattcaggtatcaactttggtatagttggaaagctctttctctc
agctacaaaaaatagcggatttttttctctgaatctcaagtggtcaggag
ttatgaccaaaagactgtgtatcggtagaatggccttttcaaaacgtata
tatacgtattctggcttctaagggttaaaatTATGCATATTCTAAATTCC
CTAGGActgttaaaaaattgaaaacaaatgaataataaataataacacTT
AAAGAAGAAACTTTACCGGCAGACGAAAAgaaaacatcaacaaaaatgGC
GTTAAGTGATGAAGACTTGATGAATGTGATTATGATACCGATAGGTGTCT
TTGTCATCATTGTGTTATCACTATGTGCTTTTTGCTGTCTCAGAAGAAGa
AATCGTCAACAAACATCTCACACACAACACAAACCAAAAGTGAGCAACAA
ACAAAATGGAATCACTAACTACAAACCACCTcaacaaccaaccaaaatat
ctcaaaatcgtCACGAACCTATTAGAGAAACATTTCGTAAAACAGTACCG
CCTAgtgaaatagaaaataactTCCAAGAAAATGGCCAAAGCAACAACAA
TAATGGTAGatattgtaaacaaaatggTATTTACGGACgtgatgaagatc
ataataatgGTGTCGTTCAAAATGGTAAACTTAACAATGGATATAAGACA
GACAACGAGGGCACTGAAATAATGGATGAATTTGGAACTATTTTTGATGA
ACATATAAAGGACCAAGAATCAAATCACACGGATGAAGCGGTCGATGAAA
ATGAGCGCGCGACAAGACGAAGTAAAGGTTCAGATAATAGCACAGTCATT
AATGTATCCGATGAGAAAATGCGTTCTAATATAGAAATGGAAGATCTTGC
ATCTCCGATTAAGAACTCGAACAACAATGATTTGAATGAAACAATAACAT
CTGTAAAACATGTCCAACTGAACGAACGAGTGTCAACCCCCTTGTCGACT
AACGGAGACGGGGGTAACAATAATGAACTTGGAACAGTTATTGGCAGTCA
TAACCAACCAACTTATGTAGACAGTAGTTGATGAGTCGCTTACTCCATTA
AAGGTTAAATTTGTCGTCGAAGCTTCTTAAAGAAGGTGATATTCACACCT
TTGTTTACCTTCGCCGTCTACAGATATCTCAATACGAAATACTAGATCGa
acttctttatttttcgtaTGCAAGCCACGGCAGGTGAAACACGAAACAAT
ACGCCATATTTACTGAAAGTATAAACACAGTATAAACCTTGATTATCGCA
GTGCTTAAATATTTTGACACTGTATTGACTTGAATTTCAAAGAACGCGCA
AGTAAATTAGGACGTCACTCTATTAAAGATGGCGCATGCTAGTTTCTAGA
GTCCAACTGACTACGGAGAAAAATGAGTATCTTATAGTAGTTgtcatttt
gtaaaatattttgttgtttgtaaaagatttatgctaaatttttgtatatt
tatggttttatctatcaaaagtgaaaatgtcatttaaacagAATGATAAT
CAATTTCTACAAAGTGATGCGAATATTAGGAGAATAATTCTGATAAGAGC
TTTAGTGGTATCTAGGTTTCAGAGACCCAAGAACCTTTTAATCC Run BLAST on NCBI protein sequence of TCONS_00011879-protein >TCONS_00011879-protein ID=TCONS_00011879-protein|Name=TCONS_00011879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MALSDEDLMNVIMIPIGVFVIIVLSLCAFCCLRRRNRQQTSHTQHKPKVS
NKQNGITNYKPPQQPTKISQNRHEPIRETFRKTVPPSEIENNFQENGQSN
NNNGRYCKQNGIYGRDEDHNNGVVQNGKLNNGYKTDNEGTEIMDEFGTIF
DEHIKDQESNHTDEAVDENERATRRSKGSDNSTVINVSDEKMRSNIEMED
LASPIKNSNNNDLNETITSVKHVQLNERVSTPLSTNGDGGNNNELGTVIG
SHNQPTYVDSS Run BLAST on NCBI transcript from alignment at sc0000133:414858..418467- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011879 ID=TCONS_00011879|Name=TCONS_00011879|organism=Clytia hemisphaerica|type=transcript|length=3610bp|location=Sequence derived from alignment at sc0000133:414858..418467- (Clytia hemisphaerica)
ATCTTAATCTTTCAAAGCAGCTAATTTTTTTGAAAAAGGCCAAAAATTTC
ATCATTTTTTTCTGAAAATTTTTTCTTTCAAAGGCAATTTCTCAACCAGG
ACAAACGATTCAGGTATCAACTTTGGTATAGTTGGAAAGCTCTTTCTCTC
AGCTACAAAAAATAGCGGATTTTTTTCTCTGAATCTCAAGTGGTCAGGAG
TTATGACCAAAAGACTGTGTATCGGTAGAATGGCCTTTTCAAAACGTATA
TATACGTATTCTGGCTTCTAAGGGTTAAAATTATGCATATTCTAAATTCC
CTAGGACTGTTAAAAAATTGAAAACAAATGAATAATAAATAATAACACTT
AAAGAAGAAACTTTACCGGCAGACGAAAAGAAAACATCAACAAAAATGGC
GTTAAGTGATGAAGACTTGATGAATGTGATTATGATACCGATAGGTGTCT
TTGTCATCATTGTGTTATCACTATGTGCTTTTTGCTGTCTCAGAAGAAGG
TAAGATTTGCCAAGAACCTTAAAACATGATGTTTATCTACTTTAGGTGTA
CAAACTTTCGCGAGCAGAAACTTACACGAATTTTGGCCCTTTTCGCGAAA
GTAAATGTCTTTAAAAATTCTAGGAAGGGCCATTCGCGATAGTTTATGCT
CGCGAAAAATTCTTGACAAAATAGAAAATCTGTAAAACTTCGAACTTTGA
ATAAGATCTAGCTTTTATGACACTTTTTAGCCTGCTAAAAGACTAATAAG
TCAAAGGACAAATGTTTCAAGCCAATCCAAGTAGTACTTGTTCTTCTAAG
CCATATTTTTTTATGTAAAAAATCTCAATTTTACGTCTTGATTCGTGAAA
GTTTATGCTCGCGAAAAATATTTTTTCGTTAAATTCGCGAAAGTAAATGT
CGTGAATTTCGCGATTTTTCGTCCTCGCGAAAGATTCTGCTCGCGAAAGT
TGTACGCCTAAAGTACATTGAGCTCACAAAATTTCTGTCCTGAGTTACCG
TACGAATCAATAACCACCCGTACTTTACATGAGCATTATCTTTATGCCAC
ATAGGCGGTTTTAGACCATAACGAACTTATCAGAAGAAGAGATTTGTAAT
TGTAATTTCATTGTCTTTTAACAAGCATTACACTCCTTCGCATGTTTCTG
ACGTACTTGCTCTATTGTCTTAAATCCGCCAGTGCCAAGCCACAATCAAA
GTCAAAATATTTTGATATTATTTTAAGAACCACACACGATTTTTAAGTGC
TCTAACGCTTCCGAGGAATGTTATGATACTAGATTAAAGACTTGTAAAAA
AGCTAAAATACACTCCTGTGTCACAGATCCACTGGGACCCCTACCCCACT
GGAAAATTTGGCAAACAATTTCGTCCCTGGTGGAAAAATACCCTGAAATT
TCAGCCCCACTGGGAAATTGACATTGATTTCACCCCCATTCAAAATTCAA
TGTTTAAAAATTGCATTCCAAACCCATCCCCACTGGATTTTTTAACCGTG
GAACAATAGAATTTCTATTCCCATTGGAATTTCAATAGGAGTTTTTATCC
CCACTGAGGAAAAAAGTTCCTCCGGGGCTGTGAGACAGGGGTGTTGAAAT
GTTCAAATAGTGAACATGCGATGTACATAAGATTTTACTTGTATGGTTTG
CTTTGTCAAGACATGTACAGGTCTACGGTATCGCACTTTACGGTCAAAAT
AAAGCCGTGCTTAACCTCGCTAATAAGGTTGAGAATTGTAGCCTGAAAAC
CAATAAACTCCTCCCAATAAAAAAGTGAGGAAGAGTACAAAATCGCCATC
TGACTACGTGACGAGAATTGGTCAAAACTCGTCACTCATTTTTCTATTTT
CTTTTTATGATTTTTCGTCGAACAGTCTAAAATTTTGTTTGAACATTAAT
ACGGAGATGTACACATACCAGATGCTACAATTTCGGTCAAATTACATCGA
GAATTTTGGTTAGTTCCTCGTTTTTAAGAATTTAAAGTTGGGGCGAGAAA
GTCGCTTTTTGGCTATTTGTTAAATTTTATCGAATATTTAAATTCGGGAG
GGGTTTATAGACTTCTAGGTTATATTCTGAGCACTATTGGACCATCCTTG
AACTTTTGGATCCTCAGATCTTAAGTCTTAATTGTCTTAATAATCTTAAT
TTTAAAATTCAGACTTGAAACTCTACCCTCCCAACCTAAGTTAGAGCGTT
TCCAAACCGTTTGTTGCTATAAGACTTCATGGGAATTTCCCTTTTTTCTC
AAATATTGTGACTTTCATTGTAGATTTTTTTGACTAAAGTCAACTTTTGC
TAAAAGCCCTCAACGATTACAATATTGGGTAACCACTCAAAATTCTTAAA
TTTCTCTTTTTTAAGAAATCGTCAACAAACATCTCACACACAACACAAAC
CAAAAGTGAGCAACAAACAAAATGGAATCACTAACTACAAACCACCTCAA
CAACCAACCAAAATATCTCAAAATCGTCACGAACCTATTAGAGAAACATT
TCGTAAAACAGTACCGCCTAGTGAAATAGAAAATAACTTCCAAGAAAATG
GCCAAAGCAACAACAATAATGGTAGATATTGTAAACAAAATGGTATTTAC
GGACGTGATGAAGATCATAATAATGGTGTCGTTCAAAATGGTAAACTTAA
CAATGGATATAAGACAGACAACGAGGGCACTGAAATAATGGATGAATTTG
GAACTATTTTTGATGAACATATAAAGGACCAAGAATCAAATCACACGGAT
GAAGCGGTCGATGAAAATGAGCGCGCGACAAGACGAAGTAAAGGTTCAGA
TAATAGCACAGTCATTAATGTATCCGATGAGAAAATGCGTTCTAATATAG
AAATGGAAGATCTTGCATCTCCGATTAAGAACTCGAACAACAATGATTTG
AATGAAACAATAACATCTGTAAAACATGTCCAACTGAACGAACGAGTGTC
AACCCCCTTGTCGACTAACGGAGACGGGGGTAACAATAATGAACTTGGAA
CAGTTATTGGCAGTCATAACCAACCAACTTATGTAGACAGTAGTTGATGA
GTCGCTTACTCCATTAAAGGTTAAATTTGTCGTCGAAGCTTCTTAAAGAA
GGTGATATTCACACCTTTGTTTACCTTCGCCGTCTACAGATATCTCAATA
CGAAATACTAGATCGAACTTCTTTATTTTTCGTATGCAAGCCACGGCAGG
TGAAACACGAAACAATACGCCATATTTACTGAAAGTATAAACACAGTATA
AACCTTGATTATCGCAGTGCTTAAATATTTTGACACTGTATTGACTTGAA
TTTCAAAGAACGCGCAAGTAAATTAGGACGTCACTCTATTAAAGATGGCG
CATGCTAGTTTCTAGAGTCCAACTGACTACGGAGAAAAATGAGTATCTTA
TAGTAGTTGTCATTTTGTAAAATATTTTGTTGTTTGTAAAAGATTTATGC
TAAATTTTTGTATATTTATGGTTTTATCTATCAAAAGTGAAAATGTCATT
TAAACAGAATGATAATCAATTTCTACAAAGTGATGCGAATATTAGGAGAA
TAATTCTGATAAGAGCTTTAGTGGTATCTAGGTTTCAGAGACCCAAGAAC
CTTTTAATCC Coding sequence (CDS) from alignment at sc0000133:414858..418467- >TCONS_00011879 ID=TCONS_00011879|Name=TCONS_00011879|organism=Clytia hemisphaerica|type=CDS|length=1572bp|location=Sequence derived from alignment at sc0000133:414858..418467- (Clytia hemisphaerica)
AAATCGTCAACAAACATCTCACACACAACACAAACCAAAAGTGAGCAACA
AACAAAATGGAATCACTAACTACAAACCACCTCAACAACCAACCAAAATA
TCTCAAAATCGTCACGAACCTATTAGAGAAACATTTCGTAAAACAGTACC
GCCTAGTGAAATAGAAAATAACTTCCAAGAAAATGGCCAAAGCAACAACA
ATAATGGTAGATATTGTAAACAAAATGGTATTTACGGACGTGATGAAGAT
CATAATAATGGTGTCGTTCAAAATGGTAAACTTAACAATGGATATAAGAC
AGACAACGAGGGCACTGAAATAATGGATGAATTTGGAACTATTTTTGATG
AACATATAAAGGACCAAGAATCAAATCACACGGATGAAGCGGTCGATGAA
AATGAGCGCGCGACAAGACGAAGTAAAGGTTCAGATAATAGCACAGTCAT
TAATGTATCCGATGAGAAAATGCGTTCTAATATAGAAATGGAAGATCTTG
CATCTCCGATTAAGAACTCGAACAACAATGATTTGAATGAAACAATAACA
TCTGTAAAACATGTCCAACTGAACGAACGAGTGTCAACCCCCTTGTCGAC
TAACGGAGACGGGGGTAACAATAATGAACTTGGAACAGTTATTGGCAGTC
ATAACCAACCAACTTATGTAGACAGTAGTTGAATGGCGTTAAGTGATGAA
GACTTGATGAATGTGATTATGATACCGATAGGTGTCTTTGTCATCATTGT
GTTATCACTATGTGCTTTTTGCTGTCTCAGAAGAAGAAATCGTCAACAAA
CATCTCACACACAACACAAACCAAAAGTGAGCAACAAACAAAATGGAATC
ACTAACTACAAACCACCTCAACAACCAACCAAAATATCTCAAAATCGTCA
CGAACCTATTAGAGAAACATTTCGTAAAACAGTACCGCCTAGTGAAATAG
AAAATAACTTCCAAGAAAATGGCCAAAGCAACAACAATAATGGTAGATAT
TGTAAACAAAATGGTATTTACGGACGTGATGAAGATCATAATAATGGTGT
CGTTCAAAATGGTAAACTTAACAATGGATATAAGACAGACAACGAGGGCA
CTGAAATAATGGATGAATTTGGAACTATTTTTGATGAACATATAAAGGAC
CAAGAATCAAATCACACGGATGAAGCGGTCGATGAAAATGAGCGCGCGAC
AAGACGAAGTAAAGGTTCAGATAATAGCACAGTCATTAATGTATCCGATG
AGAAAATGCGTTCTAATATAGAAATGGAAGATCTTGCATCTCCGATTAAG
AACTCGAACAACAATGATTTGAATGAAACAATAACATCTGTAAAACATGT
CCAACTGAACGAACGAGTGTCAACCCCCTTGTCGACTAACGGAGACGGGG
GTAACAATAATGAACTTGGAACAGTTATTGGCAGTCATAACCAACCAACT
TATGTAGACAGTAGTTGAATGGCGTTAAGTGATGAAGACTTGATGAATGT
GATTATGATACCGATAGGTGTCTTTGTCATCATTGTGTTATCACTATGTG
CTTTTTGCTGTCTCAGAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011879-exon-sc0000133-1575043694:417969..418467 | TCONS_00011879-exon-sc0000133-1575043694:417969..418467 | Clytia hemisphaerica | exon |
| TCONS_00011879-exon-sc0000133-1575043694:414858..416102 | TCONS_00011879-exon-sc0000133-1575043694:414858..416102 | Clytia hemisphaerica | exon |
| TCONS_00011879-exon-sc0000133-1510915933:417969..418467 | TCONS_00011879-exon-sc0000133-1510915933:417969..418467 | Clytia hemisphaerica | exon |
| TCONS_00011879-exon-sc0000133-1510915933:414858..416102 | TCONS_00011879-exon-sc0000133-1510915933:414858..416102 | Clytia hemisphaerica | exon |
| TCONS_00011879-exon-sc0000133-1491911889:417969..418467 | TCONS_00011879-exon-sc0000133-1491911889:417969..418467 | Clytia hemisphaerica | exon |
| TCONS_00011879-exon-sc0000133-1491911889:414858..416102 | TCONS_00011879-exon-sc0000133-1491911889:414858..416102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:414858..418467 - |
Blast
The following BLAST results are available for this feature:
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