TCONS_00011871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011871
Unique NameTCONS_00011871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011871 ID=TCONS_00011871|Name=TCONS_00011871|organism=Clytia hemisphaerica|type=transcript|length=2853bp
GAAATCACGAACGCTTACGCCGAATTGTTCTTTCATTTAAAGAAGGCGGA
TTCGTCAAAGAAAAACCTGCCTCTGGTGGAATTTGTTGAAGTCAACAAGA
AATTCTCCTTGGCTTTGAAACGTCAATTCATTGATAAAATGGCAAAGGAT
ATGTACCCAAAGGCAACCGCAGTTAGTTTGAAGAAAAGTCTGTTGGGAAA
CTGCGACGAACAAGATGAATTTCAACAAATGTTAGAGGAGCGCTGGATGC
CGAAAAGAACCAGAACGGAGAAGCGAAGAGACAGAAAATCATTTCTTGCG
TCACCAGCTACCCCTATCCGATTCTCAAAACGTGGTGTCATCAAGAAGAC
GGAAAAGTGTAGGTGCCAGATTTGCCATAAAGCGTATGAAAGAGAGCTAC
CAGAGTTTGAAATACGTCCAGAAGATCGCCCGACATCACCGCTATATTAT
TGTAATGATTGCATAACTGACGTTTTCCAGGATATTCTTAATTATGCAAT
GGTTCAATCCTTTACAAAACCTGTCACCGATGATGACCTTTTCACCCAAG
TGTTACTATCTTTCAACGAACTTTCAGAAAACGAGAAAACAAACTACCAT
TCATCCGTGATACTCACTCTGCAGTATTGTAAAGCATCAAACCATCCAGA
GTTTAGGCAAGCACCTCCGATAACTAACAAAGGAATTACCAATCTTTATG
CTAACTGTTTTGCCAGCTCTTCGTTACAGTTGCTTCTAGGAACATGTGTG
AACAAGGCACTTCCTATTGATGATGAAATTTGCAACAACAAGCTTACTAG
GTATTTACGCTATATTAGGGATGAATTATCGAATGAATCTAATTCGCCGT
TCCCTTTTGGTAATGGATTGGACGGAGAATCTGCTATCGGTGAAATAATC
AATGTGGTATGCAAACACGATTACAGAACTGCTAGATATGTAGACGCAGA
AGAATTTATGATGGTGCTTCTAAACAAATTATTCCATGACGAGCAAAGTC
CTTTCCACAACATCTTTGTCGAGTTTACACGATGTCTGTCTTGTAATCAC
ATTCTCCATTCGCTCACAACCCTGCAAGCTTTGCGTGTAAAAGTTGATCA
CAATAAACACCAAGAAACGTTAACTTGTCTTTTGCAAAAGACTTTCTTTC
ATCAACCTCTGGAAGGTCGCAGCCGTGACCTTTATCCAAATGAATGTTGT
GACAATGCTAACCCGTTGATTGGTAGATACCTTGGAAATACCCCTCCTTT
CTTGTTGATAATGACAAATCGCTCAGACAATGCTCAGATGGTTGTTCGGA
AACAAGTCAAGGTAGAAGAACATATTGACATCTCGAAGATTGCTGGCTTC
AAGGAGAGAATCCAGTATAACCTAGTTGGTTCAATAAATTTCATTGGCAA
AGATTTGAAGCATGGTCATTACATCACCTATCttgttgaaaaaagaaata
tgctGAAGATAGACGACAATAGTTTCCAGGTTTTGGAAAAGTCAATTGTT
CTGAAGGATCCCACTTTCCAGTCAACTACTCACGTTTTGTGTTACGTCAA
AAATACCAAAGCAACAGAAGAAGAATTTCTCTTAGATGAGTCTGATTGGA
GTTCAATGAATCAAATACTCCTTTCAACGTTAAATCCCTTATCGTCTTCT
ATCTCCAATGCTGATATAAAGAGGTGTTTGGTGGACAAAGCTAATGATGA
AATTATCAATGGCTTTTTATCATTTATGAAGAATCGCCTACCTGATGAAA
TAACAGTTATCTCCAGTCTTTGGTATCAAGATGTCTATGGAAACCGGTTA
TCAGACTTGCGAAGACGTTTTGGTCACAAATTGGCACTATACAAAGATGT
TGTATTGATCCCTGTACATGAGCACGACCACTGGCTcttaattttcataa
aagacGACATTGCTGTAGTTTATGACCCTCTGATTCAACCACGTGTTAAC
TGGGAAGGCATCAAAGTAGTCAATAACGAAACTCTTCGCTACAAATCCCA
ACCATTGGAATGGCTTCAATTGAAAGGTAGAAAACAACAGAACCTCGTCG
ATTGTGGATATCTAGTTCTTGCTATGGCGTGGGATTTATGCAAAAGAAAA
GAATCTGCAACCAAAATACCATCGCCGCTTTTAAGACGTTGGATAGCTTC
TCAATGTGCAAAAGTTGAGGATGCGCGTGAAGATATACCGAAATACAAAG
AACCAAGGAACTGGCATGATCACCAACACGGCAATATACCTGTAGCTGAA
ATTTCGTTTGGTTCCTTGATGAAACTGCTCGACAAAAAAGATTCTACGAA
AAAAAACTCACCGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCA
CATCCGATGATGCACAAATGAAGAATTCGACAGACTCACCGCAGACTCGC
CAAAGCAAACAATTTCCAAGTCAACCCACATCCGATGATGCACAAATGAA
GAATTCGACAGACTCACCGCAGACTCGCCAAAGCAAACAATTTCCAAGTC
AACCCACATCCAATGATGCACAAATGAAGAATTCGACAGACTCACAGTTT
GCACATACGCAAAAGAGAAAGCTTTCGTCccagatgaaaaattttgaagA
ACTCATTCAGAATATCAAACGGAGAAAATCTAATGCATCAGATATAGAAG
AAATTGAAACAACACTTCGACGCAAAAATCAAGCTGATGACAgcatttca
agaaaaacaaaatttgagacTGACATCATTTCAATCGATGaaaataacaT
TCAGGTTGATAGCGAAgaagtaaaagaaaagaaatgtacaatatttgaga
aaatcagCAGTGAAGACGGTATTTCAAGTGACAAAAGCACTGACACTGAT
GAT
Run BLAST on NCBI

transcript from alignment at sc0000133:291223..296040-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011871 ID=TCONS_00011871|Name=TCONS_00011871|organism=Clytia hemisphaerica|type=transcript|length=4818bp|location=Sequence derived from alignment at sc0000133:291223..296040- (Clytia hemisphaerica)
GAAATCACGAACGCTTACGCCGAATTGTTCTTTCATTTAAAGAAGGCGGA
TTCGTCAAAGAAAAACCTGCCTCTGGTGGAATTTGTTGAAGTCAACAAGA
AATTCTCCTTGGCTTTGAAACGTCAATTCATTGATAAAATGGCAAAGGAT
ATGTACCCAAAGGCAACCGCAGTTAGTTTGAAGAAAAGTCTGTTGGGAAA
CTGCGACGAACAAGATGAATTTCAACAAATGTTAGAGGAGCGCTGGATGC
CGAAAAGAACCAGAACGGAGAAGCGAAGAGACAGAAAATCATTTCTTGCG
TCACCAGCTACCCCTATCCGATTCTCAAAACGTGGTGTCATCAAGAAGAC
GGAAAAGTGTAGGTGCCAGATTTGCCATAAAGCGTATGAAAGAGAGCTAC
CAGAGTTTGAAATACGTCCAGAAGATCGCCCGACATCACCGCTATATTAT
TGTAATGATTGCATAACTGACGTTTTCCAGGATATTCTTAATTATGCAAT
GGTTCAATCCTTTACAAAACCTGTCACCGATGATGACCTTTTCACCCAAG
TGTTACTATCTTTCAACGAACTTTCAGAAAACGAGAAAACAAACTACCAT
TCATCCGTGATACTCACTCTGCAGTATTGTAAAGCATCAAACCATCCAGA
GTTTAGGCAAGCACCTCCGATAACTAACAAAGGAATTACCAATCTTTATG
CTAACTGTTTTGCCAGCTCTTCGTTACAGTTGCTTCTAGGAACATGTGTG
AACAAGGCACTTCCTATTGATGATGAAATTTGCAACAACAAGCTTACTAG
GTATTTACGCTATATTAGGGATGAATTATCGAATGAATCTAATTCGCCGT
TCCCTTTTGGTAATGGATTGGACGGAGAATCTGCTATCGGTGAAATAATC
AATGTGGTATGCAAACACGATTACAGAACTGCTAGATATGTAGACGCAGA
AGAATTTATGATGGTGCTTCTAAACAAATTATTCCATGACGAGCAAAGTC
CTTTCCACAACATCTTTGTCGAGTTTACACGATGTCTGTCTTGTAATCAC
ATTCTCCATTCGCTCACAACCCTGCAAGCTTTGCGTGTAAAAGTTGATCA
CAATAAACACCAAGAAACGTTAACTTGTCTTTTGCAAAAGACTTTCTTTC
ATCAACCTCTGGAAGGTCGCAGCCGTGACCTTTATCCAAATGAATGTTGT
GACAATGCTAACCCGTTGATTGGTAGATACCTTGGAAATACCCCTCCTTT
CTTGTTGATAATGACAAATCGCTCAGACAATGCTCAGATGGTTGTTCGGA
AACAAGTCAAGGTAGAAGAACATATTGACATCTCGAAGATTGCTGGCTTC
AAGGAGAGAATCCAGTATAACCTAGTTGGTTCAATAAATTTCATTGGCAA
AGATTTGAAGCATGGTCATTACATCACCTATCTTGTTGAAAAAAGAAATA
TGCTGAAGATAGACGACAATAGTTTCCAGGTTTTGGAAAAGTCAATTGTT
CTGAAGGATCCCACTTTCCAGTCAACTACTCACGTTTTGTGTTACGTCAA
AAATACCAAAGCAACAGAAGAAGAATTTCTCTTAGATGAGTCTGATTGGA
GTTCAATGAATCAAATACTCCTTTCAACGTTAAATCCCTTATCGTCTTCT
ATCTCCAATGCTGATATAAAGAGGTGTTTGGTGGACAAAGCTAATGATGA
AATTATCAATGGCTTTTTATCATTTATGAAGAATCGCCTACCTGATGAAA
TAACAGTTATCTCCAGTCTTTGGTATCAAGATGTCTATGGAAACCGGTTA
TCAGACTTGCGAAGACGTTTTGGTCACAAATTGGCACTATACAAAGATGT
TGTATTGATCCCTGTACATGAGCACGACCACTGGCTCTTAATTTTCATAA
AAGACGACATTGCTGTAGTTTATGACCCTCTGATTCAACCACGTGTTAAC
TGGGAAGGCATCAAAGTAGTCAATAACGAAACTCTTCGCTACAAATCCCA
ACCATTGGAATGGCTTCAATTGAAAGGTAGAAAACAACAGAACCTCGTCG
ATTGTGGATATCTAGTTCTTGCTATGGCGTGGGATTTATGCAAAAGAAAA
GAATCTGCAACCAAAATACCATCGCCGCTTTTAAGACGTTGGATAGCTTC
TCAATGTGCAAAAGTTGAGGATGCGCGTGAAGATATACCGAAATACAAAG
AACCAAGGAACTGGCATGATCACCAACACGGCAATATACCTGTAGCTGAA
ATTTCGTTTGGTTCCTTGATGAAACTGCTCGACAAAAAAGATTCTACGAA
AAAAAGTAAGTCGTATTATTTACAAGGTTAGCATTGATATCTCTTAGCTA
ACTTTCCTATATATTCCGGAAGATTCAGAGAGCAATGATATATATTAATT
GAAAAAGAGTGAATGATTTTGAAGAATAACAGCTAGGTTAAACGTTACGA
CTTTAGTGTTTTATTTAAATTTTCTTCAATCCCATCACGAAGAAACGACG
TTATCAACATTTCATTCTTAAAAATCTATCGGTTCACGTTTACAGACTCA
CCGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATCCGATGA
TGCACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAACGTTACGAC
TATAGTGTTTTATTTAAATTTTCTTCAATCCCATCACGAAGAAACGAGGT
TATCAAAATTTCATTCTTAAAAATCTATCGGTTCACGTTTACAGACTCAC
CGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATCCGATGAT
GCACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAACGTTACGACT
TTAGTGTTTTATTTAAATTTTGTTCAATCCTATCACGAAGAAACGACGTT
ATCAACATTTCATTCTTAAAAATCTATTGGTTCACGTTTACAGACTCACC
GCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATCCAATGATG
CACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAACGTTACGACTT
TAGTATTTTATTTAAATTTTCTTCAATCCCATCACGAAGAAACGAGGTTA
TCAAAATTTCATTCTTAAAAATCTATCGGTTCACGTTTACAGACTCACCG
CAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATCCGATGATGC
ACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAACGTTACGACTTT
AGTGTTTTATTTAAATTTTCTTCAATCCCATCACGAAGAAACGAGGTTAT
CAAAATTTCATTCTTAAAAATCTATCGGTTCACGTTTACAGACTCACCGC
AGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATCCGATGATGCA
CAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAACGTTACGACTATA
GTGTTTTATTTAAATTTTCTTCAATCCCATCACGAAGAAACGAGGTTATC
AAAATTTCATTCTTAAAAATCTATCGGTTCACGTTTACAGACTCACCGCA
GACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATCCGATGATGCAC
AAATGAAGAATTCGACAGGTAGATAAATTGGTTAAACGTTACGACTTTAG
TGTTTTATTTAAATTTTCTTCAATCCTATCACGAAGAAACGACGTTATCA
ACATTTCATTCTTGAAAATCTATCGGTTCACGTTTACAGACTCACCGCAG
ACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATCCAATGATGCACA
AATGAAGAATTCGACAGGTAGATAAATTTTGATTAAACGTTACGACTTTA
GTGTTTTATTTAAATTTTGATCGATGTCATCTCGAAAAAAAGAGGTTTTC
TATATTTAATTCTCATTAATTTATCATTTCATGTTTACAGACTCACAGTT
TGCACATACGCAAAAGAGAAAGCTTTCGTCCCAGATGAAAAATTTTGAAG
GTAACAAACATCTATGATAATTTTCTGTTCTTAATGTCAATAGATTTAAA
ATTTCATAGTGAATAATACTAGCCCATATCACAATGACATTACCAAATTA
AACAAGTGTAAGTTATCTAATGGAGTAAGCTCGACGAAGTATTATATTAC
TGTTTGATACCCAACAATTTCCTTTGACTTTGAGGATTTCATTTATTTTG
CTTTTAAAGAACTCATTCAGAATATCAAACGGAGAAAATCTAATGCATCA
GATATAGAAGAAATTGGTAAGCAGTATATTTACTACACTTGATAAAATTT
GGTTACGTATTTGCATTTTCATTTTCATTTAAACCAAACTAAGAAAAAAA
TGTTTTTCATATTTCTCTAAATATTATTACAGTAGCTACATTTCCATTTT
CAGAAACAACACTTCGACGCAAAAATCAAGCTGATGACAGCATTTCAAGA
AAAACAAAATTTGAGACTGACATCATTTCAATCGATGGTACGTTTCGCTT
TTTATTTTTTATTTACCTGGATTCTTTTGGTCACTGTGCTTTCTCTTTAA
CTTTTATTATTTTAACTTTTAACGGAGTTTATAGTCGAACAAAATTTCTC
TATCGTTTTTATTTTTAGAAAATAACATTCAGGTTGATAGCGAAGAAGTA
AAAGAAAAGAAATGTACAATATTTGAGAAAATCAGCAGTGAAGACGGTAT
TTCAAGTGACAGTAAGTTTCTTAAGCGGGTTTTCTTAAAATTTTAAGCCA
TTTTGCTAAGGAAACTTTATTGAATTGTTTGCATTTTTCTCATTTCAGAA
AGCACTGACACTGATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006663XLOC_006663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011871-exon-sc0000133-1575043694:293736..296040TCONS_00011871-exon-sc0000133-1575043694:293736..296040Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1575043694:293418..293495TCONS_00011871-exon-sc0000133-1575043694:293418..293495Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1575043694:293219..293296TCONS_00011871-exon-sc0000133-1575043694:293219..293296Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1575043694:293020..293097TCONS_00011871-exon-sc0000133-1575043694:293020..293097Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1575043694:292041..292100TCONS_00011871-exon-sc0000133-1575043694:292041..292100Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1575043694:291775..291831TCONS_00011871-exon-sc0000133-1575043694:291775..291831Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1575043694:291554..291637TCONS_00011871-exon-sc0000133-1575043694:291554..291637Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1575043694:291330..291422TCONS_00011871-exon-sc0000133-1575043694:291330..291422Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1575043694:291223..291242TCONS_00011871-exon-sc0000133-1575043694:291223..291242Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:293736..296040TCONS_00011871-exon-sc0000133-1510915933:293736..296040Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:293418..293495TCONS_00011871-exon-sc0000133-1510915933:293418..293495Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:293219..293296TCONS_00011871-exon-sc0000133-1510915933:293219..293296Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:293020..293097TCONS_00011871-exon-sc0000133-1510915933:293020..293097Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:292041..292100TCONS_00011871-exon-sc0000133-1510915933:292041..292100Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:291775..291831TCONS_00011871-exon-sc0000133-1510915933:291775..291831Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:291554..291637TCONS_00011871-exon-sc0000133-1510915933:291554..291637Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:291330..291422TCONS_00011871-exon-sc0000133-1510915933:291330..291422Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1510915933:291223..291242TCONS_00011871-exon-sc0000133-1510915933:291223..291242Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:293736..296040TCONS_00011871-exon-sc0000133-1491911889:293736..296040Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:293418..293495TCONS_00011871-exon-sc0000133-1491911889:293418..293495Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:293219..293296TCONS_00011871-exon-sc0000133-1491911889:293219..293296Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:293020..293097TCONS_00011871-exon-sc0000133-1491911889:293020..293097Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:292041..292100TCONS_00011871-exon-sc0000133-1491911889:292041..292100Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:291775..291831TCONS_00011871-exon-sc0000133-1491911889:291775..291831Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:291554..291637TCONS_00011871-exon-sc0000133-1491911889:291554..291637Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:291330..291422TCONS_00011871-exon-sc0000133-1491911889:291330..291422Clytia hemisphaericaexon
TCONS_00011871-exon-sc0000133-1491911889:291223..291242TCONS_00011871-exon-sc0000133-1491911889:291223..291242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:291223..296040 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.65244e-08	1.00012e-05	0.418983	0.164791	2.98173e-06	0	0.175845	0.000533024	0	2.37895e-06	0	0	0	0	0	0	0	0	0	0	0.00208856	2.81956	0	0.000374916	0.0253696	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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