TCONS_00011863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011863
Unique NameTCONS_00011863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011863 ID=TCONS_00011863|Name=TCONS_00011863|organism=Clytia hemisphaerica|type=transcript|length=1540bp
ACATCCAATGATGCACAAATGAAGAATTCGACAGACTCACAGTTTGCACA
TACGCAAAAGAGAAAGCTTTCGTCccagatgaaaaattttgaagAACTCA
TTCAGAATATCAAACGGAGAAAATCTAATGCATCAGATATAGAAGAAATT
GAAACAACACTTCGACGCAAAAATCAAGCTGATGACAgcatttcaagaaa
aacaaaatttgagacTGACATCATTTCAATCGATGaaaataacaTTCAGG
TTGATAGCGAAgaagtaaaagaaaagaaatgtacaatatttgagaaaatc
agCAGTGAAGACGGTATTTCAAGTGACAAAAGCACTGACACTGATGATAG
TGTTTCAGACACGGATATCAAAGGTAGCAGACGTAAAAGAACATTCCAAA
ATGATGACATTTTTAATGGCAATTCAATCAATTATTTCTTGGACTCAGAC
AGTGAAATTACTTTTTCTGaTTCCGAAAACTTTAACTATCACCGCGATTT
CAATGAAGACATCGATGTTCTCAAACCTTTTAAAGACATGAAAGATGAGT
CCAAACTGTCATTGCTGATATTTTGGGCAGTCAACTGCAGAATTTTGACT
GCAACCATAATGTATGGACAAAGTAGAttagatgaaaatgaaatagtGCA
AGAACTTCCAGACACGTTTAGGTGCCGAGATTTAAAGCGATACTTACCTC
GGCTTGAACAGTACTTTAGTGACGAGGCTTGGGCTTCGTTCAttggaaat
attgaaaatttaaaggcaCGGAGATACAAATGTGCAAAATGCAATGGAAT
CATGCCACGTAATGAAGCAACCTTGCAATGCGATCGTTGCTTCCGTTGGG
TGCACTGGACAGTGGCCTGTTCTGGTGTTGCAAGGAATCCAGATGTCAAA
AACTTGACTTTCTTCTGCCACGGTTGTAAGTCCGAAGTTAAATCAGCTAA
AGATGAAAGAAGACATAAAATTGCATTTGAAATAGGAAAACACTCGAACG
CAACCCATACGGATATTGCGCGGGACAttctgaaaagaagaaaatcagaA
ATTGAAGTCTTTATCAACGATTCCTCATGTCCAATCAATAACCTTTTTTT
GAAAGCAATAGTAAAAGGTAATCAATCAAAGACTTTGAAGAACCTTAAAG
CAAGTGAATCAAACGAATTAGTTCAGGAATACTTCAATTTGAAGAACAAA
GGCCTGAAAGAAACAGTTCGGCAAATATTGTTCAAACTATACCCGACGCA
ACTTACCATTGATGGAGACGGGCCGAGTCGGATGGACTTCGTTATTTCGA
AGTTGTTCTTGAATGTTGATGAGTATTAATGGGATTAAGCTTATATATTA
CATTGAGTAATTGGATTAGGGTACGTTGAAGGAAGACATTTCAGTAAAAG
TAACATTCGGCGCATCCGGTTCCCgtcaaattcatttttttccagcTATC
CATCAAATCAAGTCAAGCATTCTGAAAATTCGGATCGTATTTTTTTTGCA
ACTGATACGTTTGCTCatcttataacattttttgtcCATA
Run BLAST on NCBI

transcript from alignment at sc0000133:288550..293451-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011863 ID=TCONS_00011863|Name=TCONS_00011863|organism=Clytia hemisphaerica|type=transcript|length=4902bp|location=Sequence derived from alignment at sc0000133:288550..293451- (Clytia hemisphaerica)
ACATCCGATGATGCACAAATGAAGAATTCGACAGGTAGATAAATTGGTTA
AACGTTACGACTATAGTGTTTTATTTAAATTTTCTTCAATCCCATCACGA
AGAAACGAGGTTATCAAAATTTCATTCTTAAAAATCTATCGGTTCACGTT
TACAGACTCACCGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCA
CATCCGATGATGCACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAA
ACGTTACGACTTTAGTGTTTTATTTAAATTTTGTTCAATCCTATCACGAA
GAAACGACGTTATCAACATTTCATTCTTAAAAATCTATTGGTTCACGTTT
ACAGACTCACCGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCAC
ATCCAATGATGCACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAA
CGTTACGACTTTAGTATTTTATTTAAATTTTCTTCAATCCCATCACGAAG
AAACGAGGTTATCAAAATTTCATTCTTAAAAATCTATCGGTTCACGTTTA
CAGACTCACCGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACA
TCCGATGATGCACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAAC
GTTACGACTTTAGTGTTTTATTTAAATTTTCTTCAATCCCATCACGAAGA
AACGAGGTTATCAAAATTTCATTCTTAAAAATCTATCGGTTCACGTTTAC
AGACTCACCGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACAT
CCGATGATGCACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAACG
TTACGACTATAGTGTTTTATTTAAATTTTCTTCAATCCCATCACGAAGAA
ACGAGGTTATCAAAATTTCATTCTTAAAAATCTATCGGTTCACGTTTACA
GACTCACCGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATC
CGATGATGCACAAATGAAGAATTCGACAGGTAGATAAATTGGTTAAACGT
TACGACTTTAGTGTTTTATTTAAATTTTCTTCAATCCTATCACGAAGAAA
CGACGTTATCAACATTTCATTCTTGAAAATCTATCGGTTCACGTTTACAG
ACTCACCGCAGACTCGCCAAAGCAAACAATTTCCAAGTCAACCCACATCC
AATGATGCACAAATGAAGAATTCGACAGGTAGATAAATTTTGATTAAACG
TTACGACTTTAGTGTTTTATTTAAATTTTGATCGATGTCATCTCGAAAAA
AAGAGGTTTTCTATATTTAATTCTCATTAATTTATCATTTCATGTTTACA
GACTCACAGTTTGCACATACGCAAAAGAGAAAGCTTTCGTCCCAGATGAA
AAATTTTGAAGGTAACAAACATCTATGATAATTTTCTGTTCTTAATGTCA
ATAGATTTAAAATTTCATAGTGAATAATACTAGCCCATATCACAATGACA
TTACCAAATTAAACAAGTGTAAGTTATCTAATGGAGTAAGCTCGACGAAG
TATTATATTACTGTTTGATACCCAACAATTTCCTTTGACTTTGAGGATTT
CATTTATTTTGCTTTTAAAGAACTCATTCAGAATATCAAACGGAGAAAAT
CTAATGCATCAGATATAGAAGAAATTGGTAAGCAGTATATTTACTACACT
TGATAAAATTTGGTTACGTATTTGCATTTTCATTTTCATTTAAACCAAAC
TAAGAAAAAAATGTTTTTCATATTTCTCTAAATATTATTACAGTAGCTAC
ATTTCCATTTTCAGAAACAACACTTCGACGCAAAAATCAAGCTGATGACA
GCATTTCAAGAAAAACAAAATTTGAGACTGACATCATTTCAATCGATGGT
ACGTTTCGCTTTTTATTTTTTATTTACCTGGATTCTTTTGGTCACTGTGC
TTTCTCTTTAACTTTTATTATTTTAACTTTTAACGGAGTTTATAGTCGAA
CAAAATTTCTCTATCGTTTTTATTTTTAGAAAATAACATTCAGGTTGATA
GCGAAGAAGTAAAAGAAAAGAAATGTACAATATTTGAGAAAATCAGCAGT
GAAGACGGTATTTCAAGTGACAGTAAGTTTCTTAAGCGGGTTTTCTTAAA
ATTTTAAGCCATTTTGCTAAGGAAACTTTATTGAATTGTTTGCATTTTTC
TCATTTCAGAAAGCACTGACACTGATGATAGTGGTAAGAATTCATGGCAA
TGTGCTCATTTTCATACAATGATGTTAAGTCATTTTCAATCAAGTATCCT
AAATTGATCTTGTTTTTGAATTTAGAATTTTTCCCTTTTAATACGTTCTC
TTTTAAAACATGAAATCAGTTTTAATTTTTTGAACTTTGTTCATTCCAAC
GCTTTTTAACAATTTTTCAGAAAAGTTGTTATAGCTATCCCAAAGCTTTT
TCATGTTCAGAGGCTGTTTTTCTTGAGAAATTTGCACTCGTTACAGTTTC
AGACACGGATATCAAAGGTAGCAGACGTAAAAGAACATTCCAAAATGATG
GTAGGGGTTTGATGATTTTATATACTACTAACGATTATGTGTACATCTCT
ACATCTCTACATCTGTGCTAGAAAAGTGTAATTCATTTACCAAATCCAAT
GGCCAAAATATTTTCTAATCAAATAGGTATAAAAGTAGGAATAAATTTTC
ATCCTCTTTATAGACATTTTTAATGGCAATTCAATCAATTATTTCTTGGA
CTCAGACAGTGAAATTACTTTTTCTGGTAAGTATTCTGCTAAACACGTTC
CTTTCTTTATTTTTGAAATTTATATATCTTACGAGACTGGTAATCTTGCT
TTGATCATTCTTCTTTTATTAGGGGAAACAAAAATCGGGGGAAGCAATGC
GATAGAATCGTTTCTGAGTTTTATTTTAAATTATAATTTATTATACGTTA
TCATTAAGATATTTTTCCTTTTCAGATTCCGAAAACTTTAACTATCACCG
CGATTTCAATGAAGACATCGATGTTCTCAGTACGTTTACCACTTTACCTA
TATTAAATGTAAATCCTCTACCACAATGCTTCGATTTAAATGTGTTAATA
ATTTCATCAGTGTATGAAACAATTTCAGAAAATTTTCGTGCTCTTTTACA
AGTATCTCTATTACTATTTGAGATTATTATAGTGACCTGCAAAAAAACCC
TTTTCTTTTAAGTAAAGTGTAGATCATAGAGGAAAGTTTCTTTCGAATGA
TGTATTTTCTTTTTGTCGATATAAAGCACGATATGCCCTTAACTTTTAGA
ACCTTTTAAAGACATGAAAGATGAGTCCAAACTGTCATTGCTGATATTTT
GGGCAGTCAACTGCAGAATTTTGACTGCAACCATAATGTATGGACAAAGT
AGATTAGATGAAAATGAAATAGTGCAAGAACTTCCAGACACGTTTAGGTG
CCGAGATTTAAAGCGATACTTACCTCGGCTTGAACAGTACTTTAGTGACG
AGGCTTGGGCTTCGTTCATTGGAAATATTGAAAATTTAAAGGCACGGAGA
TACAAATGTGCAAAATGCAATGGAATCATGCCACGTAATGAAGCAACCTT
GCAATGCGATCGTTGCTTCCGTTGGGTGCACTGGACAGTGGCCTGTTCTG
GTGTTGCAAGGAATCCAGATGTCAAAAACTTGACTTTCTTCTGCCACGGT
TGTAAGTCCGAAGTTAAATCAGGTAAATTGAACGTCTTTCCAAATTTTCT
TTTCCCACTAAAATGATTACCCCAAATAACAAGAATCTAAAGAATGTTGT
CTCGGAAAACGTTTACAACAAATTGCTTTTACCAATATCAGACGAACTTT
GGACCGAAATCCCGATTAGGATAAAAAAAAGTAACGTGATGTAATTTAGC
ATTTTTAGCACCGGGAAAGAATAACATTTCAACTGTATTTAGATGTAAAA
TATTCGCCAGGTACATATGTCTTCAAGCTGTTTCTAAATTATATTCTTCT
CTTACCTCCGCAGCTAAAGATGAAAGAAGACATAAAATTGCATTTGAAAT
AGGTGAGAAAAAGTAATTTTGACTATACTATACCAATATCTCGTGAATAT
TTATTATCAAGAATCCTTGTTTTCATTTAAAGTCTTATTTAGTCTAGGTC
TAACTAGGTCAAACTTTGGTAGGGCCTGCCATTTTGAAGAATGGTAAACT
TGGGTTGAAGTATCTGAATGAAAGATAACCAAACCAAACTCCATTAAAGG
CAAACAGATAAGAGGAGGTTAGAAGGCTCTGTACATTATTATTTCTGTTG
GAAATTCTTTCAAGTACTTTTTCTCCGATTTTTTTGTTAACTATCAGGAA
AACACTCGAACGCAACCCATACGGATATTGCGCGGGACATTCTGAAAAGA
AGAAAATCAGAAATTGAAGTCTTTATCAACGATTCCTCATGTCCAATCAA
TAACCTTTTTTTGAAAGCAATAGTAAAAGGTAATCAATCAAAGACTTTGA
AGAACCTTAAAGCAAGTGAATCAAACGAATTAGTTCAGGAATACTTCAAT
TTGAAGAACAAAGGCCTGAAAGAAACAGTTCGGCAAATATTGTTCAAACT
ATACCCGACGCAACTTACCATTGATGGAGACGGGCCGAGTCGGATGGACT
TCGTTATTTCGAAGTTGTTCTTGAATGTTGATGAGTATTAATGGGATTAA
GCTTATATATTACATTGAGTAATTGGATTAGGGTACGTTGAAGGAAGACA
TTTCAGTAAAAGTAACATTCGGCGCATCCGGTTCCCGTCAAATTCATTTT
TTTCCAGCTATCCATCAAATCAAGTCAAGCATTCTGAAAATTCGGATCGT
ATTTTTTTTGCAACTGATACGTTTGCTCATCTTATAACATTTTTTGTCCA
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006663XLOC_006663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011863-exon-sc0000133-1575043694:293450..293451TCONS_00011863-exon-sc0000133-1575043694:293450..293451Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:293020..293051TCONS_00011863-exon-sc0000133-1575043694:293020..293051Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:292041..292100TCONS_00011863-exon-sc0000133-1575043694:292041..292100Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:291775..291831TCONS_00011863-exon-sc0000133-1575043694:291775..291831Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:291554..291637TCONS_00011863-exon-sc0000133-1575043694:291554..291637Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:291330..291422TCONS_00011863-exon-sc0000133-1575043694:291330..291422Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:291219..291242TCONS_00011863-exon-sc0000133-1575043694:291219..291242Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:290902..290955TCONS_00011863-exon-sc0000133-1575043694:290902..290955Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:290676..290738TCONS_00011863-exon-sc0000133-1575043694:290676..290738Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:290423..290476TCONS_00011863-exon-sc0000133-1575043694:290423..290476Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:289730..290152TCONS_00011863-exon-sc0000133-1575043694:289730..290152Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:289400..289438TCONS_00011863-exon-sc0000133-1575043694:289400..289438Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1575043694:288550..289104TCONS_00011863-exon-sc0000133-1575043694:288550..289104Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:293450..293451TCONS_00011863-exon-sc0000133-1510915933:293450..293451Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:293020..293051TCONS_00011863-exon-sc0000133-1510915933:293020..293051Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:292041..292100TCONS_00011863-exon-sc0000133-1510915933:292041..292100Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:291775..291831TCONS_00011863-exon-sc0000133-1510915933:291775..291831Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:291554..291637TCONS_00011863-exon-sc0000133-1510915933:291554..291637Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:291330..291422TCONS_00011863-exon-sc0000133-1510915933:291330..291422Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:291219..291242TCONS_00011863-exon-sc0000133-1510915933:291219..291242Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:290902..290955TCONS_00011863-exon-sc0000133-1510915933:290902..290955Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:290676..290738TCONS_00011863-exon-sc0000133-1510915933:290676..290738Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:290423..290476TCONS_00011863-exon-sc0000133-1510915933:290423..290476Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:289730..290152TCONS_00011863-exon-sc0000133-1510915933:289730..290152Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:289400..289438TCONS_00011863-exon-sc0000133-1510915933:289400..289438Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1510915933:288550..289104TCONS_00011863-exon-sc0000133-1510915933:288550..289104Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:293450..293451TCONS_00011863-exon-sc0000133-1491911889:293450..293451Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:293020..293051TCONS_00011863-exon-sc0000133-1491911889:293020..293051Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:292041..292100TCONS_00011863-exon-sc0000133-1491911889:292041..292100Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:291775..291831TCONS_00011863-exon-sc0000133-1491911889:291775..291831Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:291554..291637TCONS_00011863-exon-sc0000133-1491911889:291554..291637Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:291330..291422TCONS_00011863-exon-sc0000133-1491911889:291330..291422Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:291219..291242TCONS_00011863-exon-sc0000133-1491911889:291219..291242Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:290902..290955TCONS_00011863-exon-sc0000133-1491911889:290902..290955Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:290676..290738TCONS_00011863-exon-sc0000133-1491911889:290676..290738Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:290423..290476TCONS_00011863-exon-sc0000133-1491911889:290423..290476Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:289730..290152TCONS_00011863-exon-sc0000133-1491911889:289730..290152Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:289400..289438TCONS_00011863-exon-sc0000133-1491911889:289400..289438Clytia hemisphaericaexon
TCONS_00011863-exon-sc0000133-1491911889:288550..289104TCONS_00011863-exon-sc0000133-1491911889:288550..289104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:288550..293451 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.026655	0.0519856	0	0	0.0424163	0.986881	1.29687	1.78754	0.314308	0.32531	1.03581e-07	0.176673	0.173639	0.0524627	0	0.0241314	0.0600293	0.0205094	0.0283348	0.0296502	0.051543	0	0	0.0277853	3.66598	2.74911	0.0365492	2.30546e-06	0.0490897	0.0822966
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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