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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011859 ID=TCONS_00011859|Name=TCONS_00011859|organism=Clytia hemisphaerica|type=transcript|length=1346bp
Cgacaattttctaaaaattaagaattcaattttttactttcttttcaaat
tatttgactcttttttgttattgttatatTACAGTTAATGACCAGTTAGT
TTCTAATAAGCtattataataataacaaatGTAATGGATTCAGCTTATTT
GAAAGAACACGTCGGCAAAGCATTAGCCCTTGGTCTTGCTGAAGTTTGTC
AGAAGAAACCTGCTGATCCTATTGAATATTTATCAAAATGGCTGAGAAAA
CATGTGGAAAATCTCAAAGATGATGCTAATGAAGCGCTTGAGTCGGAAGA
GCTTACTAAGCAACGCGAAGAAGCAGAGGATGAGAAAAGGAGACAAGAAG
CTTTACTAGAAGAACAAACGCGCATACAGAGTCAAATCATGAAACGAGAT
ATGGAAAAAATCGAGCAACAAGAAAAAGACGaattacaaaaacaaaagat
cAAGGAGGAAGGAGTTGCCAAACCAAACGATACTCCACCATCACCGACGA
TATCAGATCACCCAGTATCACCAGTGCAACCAGAAGAGGACGACCAACCA
GCACCACCAGATACACCAACCAGTCAACGCAGTCAGATCGTAGAAGCTTc
tgaagaaattgaaaattctgATACTGAAGAACAACAAGAAGAAAAACTAA
CGgaagaaacaaaacaatcaCCTATCAATGatgTGAAGCCTTCATCAAGT
AATACTTCTCCAGTACCAGTATCGCCACCACCAGAGCTGAATTCACCAGT
ACCTCGAGATGTTACAAATTCTGTTGCAAGCACTCATGGTGATATTGATG
TCAATGATGACCAATTAACTGATTCTCTCAACATCGATCATTAGTAGTAC
TGTCTGTACAGAACTAAACAGAAACTGAATCAAATcggtagaaaattcgt
cgagtGTAAATAATCGTCgttaaaaattcgtcggtaaaaaatttcgtttt
tgCCCGACCAATTATCTAGCTATAAGGTATCGTGTTAAACTCAGGACACC
CCTGTTTTACAGACCTAATGAGGCTCCAAGTTTCAAGTCCTACAAAGACC
AACAACTGAAACTATGAACAACAATAATGAACATTTTAATGTTTCAATTC
GGTCTCATTGCATTATATTTtcgtttgatatttttcaaagctCACAGGAT
CAGTGAGACAGCAGTATAAGATTCGCCACCCCcttcccccgtttattaat
ttttaagaatgtctaagtagcctgattttagcctatatttaccttatttt
taggttttcaaaagtacaatttccgccccccccccccggtaattaggttc
cctccgtttattcgaacccccccccccgtttatttggaacctaaga Run BLAST on NCBI protein sequence of TCONS_00011859-protein >TCONS_00011859-protein ID=TCONS_00011859-protein|Name=TCONS_00011859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MDSAYLKEHVGKALALGLAEVCQKKPADPIEYLSKWLRKHVENLKDDANE
ALESEELTKQREEAEDEKRRQEALLEEQTRIQSQIMKRDMEKIEQQEKDE
LQKQKIKEEGVAKPNDTPPSPTISDHPVSPVQPEEDDQPAPPDTPTSQRS
QIVEASEEIENSDTEEQQEEKLTEETKQSPINDVKPSSSNTSPVPVSPPP
ELNSPVPRDVTNSVASTHGDIDVNDDQLTDSLNIDH Run BLAST on NCBI transcript from alignment at sc0000133:214563..218638- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011859 ID=TCONS_00011859|Name=TCONS_00011859|organism=Clytia hemisphaerica|type=transcript|length=4076bp|location=Sequence derived from alignment at sc0000133:214563..218638- (Clytia hemisphaerica)
CGACAATTTTCTAAAAATTAAGAATTCAATTTTTTACTTTCTTTTCAAAT
TATTTGACTCTTTTTTGTTATTGTTATATTACAGTTAATGACCAGTTAGT
TTCTAATAAGCTATTATAATAATAACAAATGTAATGGATTCAGCTTATTT
GAAAGAACACGTCGGCAAAGCATTAGCCCTTGGTCTTGCTGAAGTTTGTC
AGAAGAAACCTGCTGATCCTATTGAATATTTATCAAAATGGCTGAGAAAA
CATGTGGAAAATCTCAAAGATGATGCTAATGTATGTTTTGATTATACTTT
TTTATTGTTTGGAAAGCTTGATAATAAACATTATACTGTTTTCTTTGGGT
TTTGAAAATTTTCTATTACAGAATGGCTCTCCAGCCTCTAATGGTGTGAG
ACTATAAAAAGAGTATTGAAATTCAATTTAATACAAAGTTTACCAAAGAA
TCCCTTAAAATTCTTTATAATTCACTATTTTTAGGAAGCGCTTGAGTCGG
AAGAGCTTACTAAGCAACGCGAAGAAGCAGAGGATGAGAAAAGGAGACAA
GAAGCTTTACTAGAAGAACAAACGCGCATACAGAGTCAAATCATGAAACG
AGATATGGAAAAAATCGAGCAACAAGAAAAAGACGAATTACAAAAACAAA
AGATCAAGGAGGAAGGAGGTTCATAGTTTATTCATTTCATAAATTTTTCT
GTTTCTGAATTTCATAATATATTTCTTTGTACAGCTTCAAGTCAATGCAG
TAATTTGTCTTTTCGGTAATGTTTTGTCAATAAAACTATAGATAGAATTT
TTAAAGAAATTTGAGATTTCAATTTAGCATTTCTTAGTACATTTTGTTTT
ACCAATTTAAAGGTTTTGTTTTTAGATAAGAGTGATATCGTTACTCGTTA
ATTTTAAATCGTAAGCTTTTTCACATTGGATTGACACGTATGTGGAGCAA
GATTGGTCAGAAAGAGAAAAAGAAAAACATTTCGTTGCTTATATCAGCAT
AATGTAACAATAGGAAGACACCGTCCTGATATGAAACACTTATGTAAAAA
TAAAACCTTTAAGAGATAAAATAAAAAAATTTAAAAATGATAAGAATTTT
TCATACTAGTTCATGCCATACATTACTAACACATCGTTTAAAGAGAGTCA
TGAGAGACTGAATTTTTAGAAACAGTTCATCAGCAAGGTGTCAAAATTTT
GCAAAGTCGATTTTCTGTCTAGCTCCGTCGTAGAACACTAAGGGTATTTT
ACAGTGATAAATCAATTTAATTTTTATAAACAGAGGAGTCCAAATAGCTC
GAAGCATAAAAGCATAAAAATTCTATAGCCTGCTTTAATTCTAACATAAA
GTTTTCAGTTTATATTTTATATACGTCCAAACAAGTACTTTATTAGTATA
ACTCTTTTGTACGGGTTTTCATGTTATGAAGAAAATTATTCTAGACATTG
TGTATTTAAGATTGAGAAAGTTTAAGAAAGATTTGAAGTCAACAAGTTTG
AAGTCATCTTGCTCAGCAGCTCAGTATGGTCGAAGTTTTCAGGGAAGAAA
AAGTGTAAGTTTTGTATTTATTTGTTTTTAATTTTCATGGGAAGTTTCTT
AGACTTTAGAGGGATGCGAAGAAAATGTATTTTTGAAAGGTGCTATTAAA
ACCATATGAATTACCAGGCCTAAAGTCATTATACTCAACTTCAATGATTT
TAAGTGAATTTATCACGTATTTATTTCACCCACTGATGATGGTGGAGTAT
TGTTTGGCTTGGCAACTAAAACATGGTGAAATCACTGACCTTTATATATC
CCTGGACCAAGTTATATCAGCCATCTTTGATAAGTTTTTTTTAAAGTTGG
TACCCGAAACTTTGCTTAACGACAAATGGCGCTACACCATTAGTGTACAA
GCGAAACTAGATCTATCAATTTCAAAAAAACTCCGATCATAATATTTTGC
TTCGCCGGCAAAGTAACTTGGTCCAGAGATATATAAAGGTCAGTGATTTC
ACCATGTTTTAGTTGCCAAACCAAACGATACTCCACCATCACCGACGATA
TCAGATCACCCAGTATCACCAGTGCAACCAGAAGAGGACGACCAACCAGC
ACCACCAGATACACCAACCAGTCAACGCAGTCAGATCGTAGAAGCTTCTG
AAGAAATTGAAAATTCTGATACTGAAGAACAACAAGAAGAAAAACTAACG
GAAGAAACAAAACAATCACCTATCAATGGTAAGATCCTTCAATGACTACA
CACTTTTTTTATAATAATGGTGTTGTTTTTTTCGGTCGGGGAAAAACACC
ATACATGTACGAGATCTTTCGCTCATTTCTTTCAGCATTTTCTAGTCTAA
AAAGTAGAAAAAATAACAGATTAGTCAAATAAATCAAAAAATCAAAAATA
ACAAACTAGAAATTCACTATGCCCTCTTCCACAAATGGTGTTTTTTCATT
TCATCATGAATATTCTTAACTTTTTTGGGAAAATCATCCTAAAATATTCT
TACAGCATTCTTAGGTTAGGATCCAAATTCAAACTAGATTTAACATGTAA
TAAATACAGTTTGATGCTCTTTAATTCGACGTTCTACTATTTGATAGGCT
CCCTTATTCGATAAGCTCCCTTATTCGATTGAAATCCAATTCTCCTGGAA
GATCGAATTAGAGAGCGTCAACTGTATAAAAATGACATTTTTGCGAAAGT
GTTCAGATTTACTGGCAACTTACAGTTACAAATGCTCTGAAATAGCACTC
TCAGGTTTAGTAGCTAAATTCCATGATGGTGATTAAATTCCGCAAAAAAA
TTTTCCAGCGAAACTTCTTCCCTTAAGGTACAAAATTCGTTTTATTTAAA
GTGATTTCATTCCGAATTTGACCTACAGTATCGGATAATTATTGATGCCT
TTAGACTAAAAAATATCCTTTGGTACTTGGAGTTTGATCTCTAAAAAGTA
GATATTCTAATTTAAAGTGCAAACTTGAAGTCATTTTCCAATCAATGCTT
CAAATATAGCAAAATAATTCAGAGCCCAATTATTTTGAAAATTTTAGAAC
CCAAAGATGAAAAATGAAGAAGAAAAATATGAACTTTTTATTCTTTAGTG
TTAAAAACTTTCGATACAGGTACTTTGAAGCTTCCTGATTTCAGCTCCTA
TAGTTTTTTTTTATAATTCGATTTATTGGAAAATAACAAACTTTAACCCT
TTGTGCGCGCTGTTTTTTTTTGAAGTTGAAGAAAGCTAGGTATTTTTATA
CTCTTTCTAAGAGCATTCGGTTTATGCCCCTTTAAATCAATTGGTAAGGA
GCTATGGCCTCAAGTCTGAGACACGCATTTACGCGTCCCTCGTGTTCTAA
GGGTTAAAGCCAAAATTCTCTTTTTGAAAAAGTCTAAAAAACAATTTCTT
TTCTTTTTAGATGTGAAGCCTTCATCAAGTAATACTTCTCCAGTACCAGT
ATCGCCACCACCAGAGCTGAATTCACCAGTACCTCGAGATGTTACAAATT
CTGTTGCAAGCACTCATGGTGATATTGATGTCAATGATGACCAATTAACT
GATTCTCTCAACATCGATCATTAGTAGTACTGTCTGTACAGAACTAAACA
GAAACTGAATCAAATCGGTAGAAAATTCGTCGAGTGTAAATAATCGTCGT
TAAAAATTCGTCGGTAAAAAATTTCGTTTTTGCCCGACCAATTATCTAGC
TATAAGGTATCGTGTTAAACTCAGGACACCCCTGTTTTACAGACCTAATG
AGGCTCCAAGTTTCAAGTCCTACAAAGACCAACAACTGAAACTATGAACA
ACAATAATGAACATTTTAATGTTTCAATTCGGTCTCATTGCATTATATTT
TCGTTTGATATTTTTCAAAGCTCACAGGATCAGTGAGACAGCAGTATAAG
ATTCGCCACCCCCTTCCCCCGTTTATTAATTTTTAAGAATGTCTAAGTAG
CCTGATTTTAGCCTATATTTACCTTATTTTTAGGTTTTCAAAAGTACAAT
TTCCGCCCCCCCCCCCCGGTAATTAGGTTCCCTCCGTTTATTCGAACCCC
CCCCCCCGTTTATTTGGAACCTAAGA Coding sequence (CDS) from alignment at sc0000133:214563..218638- >TCONS_00011859 ID=TCONS_00011859|Name=TCONS_00011859|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000133:214563..218638- (Clytia hemisphaerica)
ATGTGAAGCCTTCATCAAGTAATACTTCTCCAGTACCAGTATCGCCACCA
CCAGAGCTGAATTCACCAGTACCTCGAGATGTTACAAATTCTGTTGCAAG
CACTCATGGTGATATTGATGTCAATGATGACCAATTAACTGATTCTCTCA
ACATCGATCATTAGTTGCCAAACCAAACGATACTCCACCATCACCGACGA
TATCAGATCACCCAGTATCACCAGTGCAACCAGAAGAGGACGACCAACCA
GCACCACCAGATACACCAACCAGTCAACGCAGTCAGATCGTAGAAGCTTC
TGAAGAAATTGAAAATTCTGATACTGAAGAACAACAAGAAGAAAAACTAA
CGGAAGAAACAAAACAATCACCTATCAATGGAAGCGCTTGAGTCGGAAGA
GCTTACTAAGCAACGCGAAGAAGCAGAGGATGAGAAAAGGAGACAAGAAG
CTTTACTAGAAGAACAAACGCGCATACAGAGTCAAATCATGAAACGAGAT
ATGGAAAAAATCGAGCAACAAGAAAAAGACGAATTACAAAAACAAAAGAT
CAAGGAGGAAGGAGATGGATTCAGCTTATTTGAAAGAACACGTCGGCAAA
GCATTAGCCCTTGGTCTTGCTGAAGTTTGTCAGAAGAAACCTGCTGATCC
TATTGAATATTTATCAAAATGGCTGAGAAAACATGTGGAAAATCTCAAAG
ATGATGCTAATATGTGAAGCCTTCATCAAGTAATACTTCTCCAGTACCAG
TATCGCCACCACCAGAGCTGAATTCACCAGTACCTCGAGATGTTACAAAT
TCTGTTGCAAGCACTCATGGTGATATTGATGTCAATGATGACCAATTAAC
TGATTCTCTCAACATCGATCATTAGTTGCCAAACCAAACGATACTCCACC
ATCACCGACGATATCAGATCACCCAGTATCACCAGTGCAACCAGAAGAGG
ACGACCAACCAGCACCACCAGATACACCAACCAGTCAACGCAGTCAGATC
GTAGAAGCTTCTGAAGAAATTGAAAATTCTGATACTGAAGAACAACAAGA
AGAAAAACTAACGGAAGAAACAAAACAATCACCTATCAATGGAAGCGCTT
GAGTCGGAAGAGCTTACTAAGCAACGCGAAGAAGCAGAGGATGAGAAAAG
GAGACAAGAAGCTTTACTAGAAGAACAAACGCGCATACAGAGTCAAATCA
TGAAACGAGATATGGAAAAAATCGAGCAACAAGAAAAAGACGAATTACAA
AAACAAAAGATCAAGGAGGAAGGAGATGGATTCAGCTTATTTGAAAGAAC
ACGTCGGCAAAGCATTAGCCCTTGGTCTTGCTGAAGTTTGTCAGAAGAAA
CCTGCTGATCCTATTGAATATTTATCAAAATGGCTGAGAAAACATGTGGA
AAATCTCAAAGATGATGCTAATATGTGAAGCCTTCATCAAGTAATACTTC
TCCAGTACCAGTATCGCCACCACCAGAGCTGAATTCACCAGTACCTCGAG
ATGTTACAAATTCTGTTGCAAGCACTCATGGTGATATTGATGTCAATGAT
GACCAATTAACTGATTCTCTCAACATCGATCATTAGTTGCCAAACCAAAC
GATACTCCACCATCACCGACGATATCAGATCACCCAGTATCACCAGTGCA
ACCAGAAGAGGACGACCAACCAGCACCACCAGATACACCAACCAGTCAAC
GCAGTCAGATCGTAGAAGCTTCTGAAGAAATTGAAAATTCTGATACTGAA
GAACAACAAGAAGAAAAACTAACGGAAGAAACAAAACAATCACCTATCAA
TGGAAGCGCTTGAGTCGGAAGAGCTTACTAAGCAACGCGAAGAAGCAGAG
GATGAGAAAAGGAGACAAGAAGCTTTACTAGAAGAACAAACGCGCATACA
GAGTCAAATCATGAAACGAGATATGGAAAAAATCGAGCAACAAGAAAAAG
ACGAATTACAAAAACAAAAGATCAAGGAGGAAGGAGATGGATTCAGCTTA
TTTGAAAGAACACGTCGGCAAAGCATTAGCCCTTGGTCTTGCTGAAGTTT
GTCAGAAGAAACCTGCTGATCCTATTGAATATTTATCAAAATGGCTGAGA
AAACATGTGGAAAATCTCAAAGATGATGCTAATATGTGAAGCCTTCATCA
AGTAATACTTCTCCAGTACCAGTATCGCCACCACCAGAGCTGAATTCACC
AGTACCTCGAGATGTTACAAATTCTGTTGCAAGCACTCATGGTGATATTG
ATGTCAATGATGACCAATTAACTGATTCTCTCAACATCGATCATTAGTTG
CCAAACCAAACGATACTCCACCATCACCGACGATATCAGATCACCCAGTA
TCACCAGTGCAACCAGAAGAGGACGACCAACCAGCACCACCAGATACACC
AACCAGTCAACGCAGTCAGATCGTAGAAGCTTCTGAAGAAATTGAAAATT
CTGATACTGAAGAACAACAAGAAGAAAAACTAACGGAAGAAACAAAACAA
TCACCTATCAATGGAAGCGCTTGAGTCGGAAGAGCTTACTAAGCAACGCG
AAGAAGCAGAGGATGAGAAAAGGAGACAAGAAGCTTTACTAGAAGAACAA
ACGCGCATACAGAGTCAAATCATGAAACGAGATATGGAAAAAATCGAGCA
ACAAGAAAAAGACGAATTACAAAAACAAAAGATCAAGGAGGAAGGAGATG
GATTCAGCTTATTTGAAAGAACACGTCGGCAAAGCATTAGCCCTTGGTCT
TGCTGAAGTTTGTCAGAAGAAACCTGCTGATCCTATTGAATATTTATCAA
AATGGCTGAGAAAACATGTGGAAAATCTCAAAGATGATGCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011859-exon-sc0000133-1575043694:218359..218638 | TCONS_00011859-exon-sc0000133-1575043694:218359..218638 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1575043694:217971..218154 | TCONS_00011859-exon-sc0000133-1575043694:217971..218154 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1575043694:216411..216626 | TCONS_00011859-exon-sc0000133-1575043694:216411..216626 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1575043694:214563..215228 | TCONS_00011859-exon-sc0000133-1575043694:214563..215228 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1510915933:218359..218638 | TCONS_00011859-exon-sc0000133-1510915933:218359..218638 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1510915933:217971..218154 | TCONS_00011859-exon-sc0000133-1510915933:217971..218154 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1510915933:216411..216626 | TCONS_00011859-exon-sc0000133-1510915933:216411..216626 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1510915933:214563..215228 | TCONS_00011859-exon-sc0000133-1510915933:214563..215228 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1491911889:218359..218638 | TCONS_00011859-exon-sc0000133-1491911889:218359..218638 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1491911889:217971..218154 | TCONS_00011859-exon-sc0000133-1491911889:217971..218154 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1491911889:216411..216626 | TCONS_00011859-exon-sc0000133-1491911889:216411..216626 | Clytia hemisphaerica | exon |
| TCONS_00011859-exon-sc0000133-1491911889:214563..215228 | TCONS_00011859-exon-sc0000133-1491911889:214563..215228 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:214563..218638 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007858 | Dpy-30_motif |
Blast
The following BLAST results are available for this feature:
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