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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011844 ID=TCONS_00011844|Name=TCONS_00011844|organism=Clytia hemisphaerica|type=transcript|length=336bp
ACGAGCAGTTGAGAACTCTGGTTAATGATGTTGTTGAAAAAGACTTTGGC
CCACAAATCATGAAAAGCACCAAGGACACAGTGAAAGCTGCTTCTGGACA
ATCTGCTGAGAATCGTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGA
AAAGAAGAGAGCCAACGACAACATTGTACTCAAGAAAACCGGCCATCAAG
ATCAATTTGCTCATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTC
GAATTCATGGAAGAGACGGATGTTGATGGGACGAAAGAAGCTTTGAATAA
AGATCATGCCCcccaaaatttgaaagaaaaactcgC Run BLAST on NCBI transcript from alignment at sc0000133:559634..561011+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011844 ID=TCONS_00011844|Name=TCONS_00011844|organism=Clytia hemisphaerica|type=transcript|length=1378bp|location=Sequence derived from alignment at sc0000133:559634..561011+ (Clytia hemisphaerica)
ACGAGCAGTTGAGAACTCTGGTTAATGATGTTGTTGAAAAAGACTTTGGC
CCACAAATCATGAAAAGCACCAAGGACACAGTGAAAGCTGCTTCTGGACA
ATCTGCTGAGAATCGTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGA
AAAGAAGAGAGCCAACGACAACATTGTACTCAAGAAAACCGGCCATCAAG
ATCAATTTGCTCATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTC
GAATTCATGGAAGAGACGGATGTTGATGGGACGAAAGAAGCTTTGAATAA
AGGTAAgagattatttatttattagagACTCGTATACAACATATTAGAAT
CGCCGTCACACATGGGTGGCTTACTGTTAACGAACTTAAGGCAAGCGATC
TTACATCTGGAGACGTGGAGGAAAATAGGCTTAAGAGGGCTATTAAAAAT
GCAGAGCAAGTTAAACAAcgtatttataaaaaaaacaagaatagACGAAC
CTGATGGAGAATACTCCAAGGCAATCAAATCTAGAACTGAACAAAGGAGC
AGTATGGAGGAGGTGGTTTGTTATTCATGCAATGAATGAAAGAGTATGGC
ACTACGTCAGCCACTGTcctttttctgaattttcttcaCCTTTGGCCTAC
TCGACAAAATTAATGTCCTCATCAACAGCAACTAAAAGTTCGTCGTCCAA
TTCAAGTTCTAAATTGTCAAGGGATGGAAAGTAActttaacaaaaaatat
ataagatTTTCAGACATTCAGAACaagttttcaacttttgaaatacagta
gCTATTTTACGTTGCGttagttttaaaatttgattACAATTGTTGTAATT
TGTTGTAATTAGATTAGTATTAATGAGAGCTCATGATATAAATGTACCTG
ATCTTCTATTCTATTTCAACTATTTCAACTGTGCCATTTTACCTTCTTAA
ATAATAAATGTCAAAATTAGACGATGCAACAAATTATCAAAACTTCTCTC
CTTTGTGAGAATGCTTTTAGCACTTGACCCTTATTATATCAATTATTCTA
ACACAAAATGTATAATTGACAAATTTGCAGGCTTCTATTATGTAGCatca
tttttctttccttttatgTTGACACGCTTGGTGACTACATTTGCAAGATT
TATTACATCACGATCAACGTTACGTGTGGTGTGTTTTATGTGTCAATGCC
TCTGTGCAAACACGTCTTTCACGTCAATGTCTCTGTACAAACGCATTTGA
GGAGTTCTTTCTCCATCTTGAAGCCCTTCGTCATACAGATGGCAAAGTGC
AAAGGTACGAAATTTACTATTTtacttatttcatttttcaacagATCATG
CCCcccaaaatttgaaagaaaaactcgC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011844-exon-sc0000133-1491911889:559634..559935 | TCONS_00011844-exon-sc0000133-1491911889:559634..559935 | Clytia hemisphaerica | exon |
| TCONS_00011844-exon-sc0000133-1510915933:559634..559935 | TCONS_00011844-exon-sc0000133-1510915933:559634..559935 | Clytia hemisphaerica | exon |
| TCONS_00011844-exon-sc0000133-1575043694:559634..559935 | TCONS_00011844-exon-sc0000133-1575043694:559634..559935 | Clytia hemisphaerica | exon |
| TCONS_00011844-exon-sc0000133-1491911889:560978..561011 | TCONS_00011844-exon-sc0000133-1491911889:560978..561011 | Clytia hemisphaerica | exon |
| TCONS_00011844-exon-sc0000133-1510915933:560978..561011 | TCONS_00011844-exon-sc0000133-1510915933:560978..561011 | Clytia hemisphaerica | exon |
| TCONS_00011844-exon-sc0000133-1575043694:560978..561011 | TCONS_00011844-exon-sc0000133-1575043694:560978..561011 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:559634..561011 + |
Blast
The following BLAST results are available for this feature:
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