TCONS_00011817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011817
Unique NameTCONS_00011817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011817 ID=TCONS_00011817|Name=TCONS_00011817|organism=Clytia hemisphaerica|type=transcript|length=288bp
AGAGGTCATTAGAGGGattaaaaatatcgaaaaagggCGTGGTCAACATG
TGACAGAGGGAAATTCCCCAAAATACTTTCAACAGTgagactctgaaaat
ttcagaaatgacCATCAAGAACGAATGGGGAATAGGACCAAAAATGCGAA
GGGTTACAGTGCGccctttcttccaaaatgaactagAATTGACAAAGCGc
tgctttttcaaaaacttacaTACAGCCCTACGGACACTGACCTACTAATG
AAAAGCCCGATGCTCGCCAACAATGCTGAGAAAGTAAC
Run BLAST on NCBI

transcript from alignment at sc0000132:469489..469776

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011817 ID=TCONS_00011817|Name=TCONS_00011817|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at sc0000132:469489..469776 (Clytia hemisphaerica)
GTTACTTTCTCAGCATTGTTGGCGAGCATCGGGCTTTTCATTAGTAGGTC AGTGTCCGTAGGGCTGTAtgtaagtttttgaaaaagcagCGCTTTGTCAA TTctagttcattttggaagaaagggCGCACTGTAACCCTTCGCATTTTTG GTCCTATTCCCCATTCGTTCTTGATGgtcatttctgaaattttcagagtc tcACTGTTGAAAGTATTTTGGGGAATTTCCCTCTGTCACATGTTGACCAC GccctttttcgatatttttaatCCCTCTAATGACCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006635XLOC_006635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011817-exon-sc0000132-1491911889:469489..469776TCONS_00011817-exon-sc0000132-1491911889:469489..469776Clytia hemisphaericaexon
TCONS_00011817-exon-sc0000132-1510915933:469489..469776TCONS_00011817-exon-sc0000132-1510915933:469489..469776Clytia hemisphaericaexon
TCONS_00011817-exon-sc0000132-1575043694:469489..469776TCONS_00011817-exon-sc0000132-1575043694:469489..469776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:469489..469776 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.893738 0 0 0 4.2184 4.76205 2.29808 2.6893 1.50627 1.86576 0.905477 0.297612 0.594397 0.308644 0.507494 0 0.670926 0.687678 2.85019 0 1.29618 1.89669 1.53711 0.93164 0 1.28459 1.22549 0 0.99198 0.505335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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