TCONS_00011816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011816
Unique NameTCONS_00011816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011816 ID=TCONS_00011816|Name=TCONS_00011816|organism=Clytia hemisphaerica|type=transcript|length=508bp
TAAATTTTACATGCCGTTTATTTctgaataaataaatgaaaaaaaataag
ggTCATACAAATATTTATAATAAGTTCttatgaaaattgaagaatGAATA
AGAATGGTTTTGAATAAATATATCAATAAATAAGTTACCTTTCGAATTAT
ACCGTCAAATAAATAATACACATTACTCCTTCTTCATAATCGTTTATGGG
GTAAGGGGGATAAAGGGGGGATAAGGGTCGTAAAGGATGCTTTATCATCC
ATCCTTTGGTATCGATTGGTCCTAATTGAGTGACTGTGTCCAGTATTTCC
CATCGTACAAACAAGCGTTGAATGTTTCGTTGAAGAGAAGATTTCCTGGA
CATTTGACGCAACCAACCGTCATTCCATTCCAACACGCGACATATTGACG
TGGTTGTTGAGGGTCACGGATGTTCATTCGTCCTTCAGGTCCCATTCGAC
CGCAGATGTCGGGGCAATCATAGGTTGAAGCTGGTTTCCAAGCCTCTGTT
GTGAGGCA
Run BLAST on NCBI

transcript from alignment at sc0000132:428494..429001

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011816 ID=TCONS_00011816|Name=TCONS_00011816|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0000132:428494..429001 (Clytia hemisphaerica)
TGCCTCACAACAGAGGCTTGGAAACCAGCTTCAACCTATGATTGCCCCGA
CATCTGCGGTCGAATGGGACCTGAAGGACGAATGAACATCCGTGACCCTC
AACAACCACGTCAATATGTCGCGTGTTGGAATGGAATGACGGTTGGTTGC
GTCAAATGTCCAGGAAATCTTCTCTTCAACGAAACATTCAACGCTTGTTT
GTACGATGGGAAATACTGGACACAGTCACTCAATTAGGACCAATCGATAC
CAAAGGATGGATGATAAAGCATCCTTTACGACCCTTATCCCCCCTTTATC
CCCCTTACCCCATAAACGATTATGAAGAAGGAGTAATGTGTATTATTTAT
TTGACGGTATAATTCGAAAGGTAACTTATTTATTGATATATTTATTCAAA
ACCATTCTTATTCattcttcaattttcataaGAACTTATTATAAATATTT
GTATGAcccttattttttttcatttatttattcagAAATAAACGGCATGT
AAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006634XLOC_006634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011816-exon-sc0000132-1491911889:428494..429001TCONS_00011816-exon-sc0000132-1491911889:428494..429001Clytia hemisphaericaexon
TCONS_00011816-exon-sc0000132-1510915933:428494..429001TCONS_00011816-exon-sc0000132-1510915933:428494..429001Clytia hemisphaericaexon
TCONS_00011816-exon-sc0000132-1575043694:428494..429001TCONS_00011816-exon-sc0000132-1575043694:428494..429001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:428494..429001 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118655	0.115707	0.403041	0.394312	7.04055	8.09241	2.44079	1.85659	0.699916	0.247703	0.480852	0.395117	18.9063	7.77791	0	0.14461	0	0	0.378398	0	0	0	0	0	0	0	0	0.347274	0	0.134179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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