TCONS_00011807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011807
Unique NameTCONS_00011807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011807 ID=TCONS_00011807|Name=TCONS_00011807|organism=Clytia hemisphaerica|type=transcript|length=367bp
TGGACGATAAGGAAGTCCTTAAGTAGGAATTCGgtatttgttttgatctt
tcgCCATTAACCTCATACAAATAGCGAATGAATATAATTAACAACCactt
aaagatattttaaagaCTTCCAGAATCATAAGCGTTTTCCTGATTGATGA
ATTTAATCTCTgctttttgcaaaagttttacATTAAATTGCATCATTAGG
AGCTGGTAAATCTTTTTGTGTTCCCTTGAACGCGGAAAGTACTTAGAAAT
CGTTAAAAATCGCTTTTCTGTCAATTTTGCGGTAAATGACATCTAATCAA
TACGATAATTATTAGCACCTATACATATTCACAATAATCAATCtgttatt
gaaaaattaaaatgtac
Run BLAST on NCBI

transcript from alignment at sc0000132:255779..256145

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011807 ID=TCONS_00011807|Name=TCONS_00011807|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0000132:255779..256145 (Clytia hemisphaerica)
gtacattttaatttttcaataacaGATTGATTATTGTGAATATGTATAGG
TGCTAATAATTATCGTATTGATTAGATGTCATTTACCGCAAAATTGACAG
AAAAGCGATTTTTAACGATTTCTAAGTACTTTCCGCGTTCAAGGGAACAC
AAAAAGATTTACCAGCTCCTAATGATGCAATTTAATgtaaaacttttgca
aaaagcAGAGATTAAATTCATCAATCAGGAAAACGCTTATGATTCTGGAA
GtctttaaaatatctttaagtGGTTGTTAATTATATTCATTCGCTATTTG
TATGAGGTTAATGGcgaaagatcaaaacaaatacCGAATTCCTACTTAAG
GACTTCCTTATCGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006625XLOC_006625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011807-exon-sc0000132-1491911889:255779..256145TCONS_00011807-exon-sc0000132-1491911889:255779..256145Clytia hemisphaericaexon
TCONS_00011807-exon-sc0000132-1510915933:255779..256145TCONS_00011807-exon-sc0000132-1510915933:255779..256145Clytia hemisphaericaexon
TCONS_00011807-exon-sc0000132-1575043694:255779..256145TCONS_00011807-exon-sc0000132-1575043694:255779..256145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:255779..256145 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.218964	0	0	0	0	0.866055	1.08105	0.189218	1.40626	0.682475	0.149544	0.597345	0.930523	0.765016	0.54732	0.50569	0.172772	0.477388	0.249776	0.434201	0	0	0.234065	0	0	0.307893	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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