TCONS_00011796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011796
Unique NameTCONS_00011796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011796 ID=TCONS_00011796|Name=TCONS_00011796|organism=Clytia hemisphaerica|type=transcript|length=1872bp
accagaccaTTTTTATGATTAAAGTTTGATTGTTTGGTAGCTTACCCAGC
ATTTGGAGGACGGTTGGACCAGACAATGGCTAACATCAACACGATGTTTC
AATTGAAAGAAAAGACCAAAAAACCGTGTTATTTGATCACTGATGATGAT
ATCGCTTTTCTCGTCGACAAGGGAAAGACAAGAATAAAGGTGGAGAGAGA
GTTGAAAGGTGGATGGTGTAGTTTAATTCCTATCGCATGCAAAGCAGAGA
AAGTCACCACAACCGGATTCAAATGGAATTTGGACGGTGACTCGATGGAG
TTCGGTTCATTGGTGAGCACATCAAATGCGTTCGGTGAAAATGTTGATCA
CGTGACAGTTGACACGTCACATCCACTGCTTATCACCTTTGGAATCAAAA
GTTGAAACTAACGCTGGAACTTTCTAGTCAACGGGACaagtagactagag
tctacttctggctgaactttgctttttgataattttttatgacgctgagt
ccagtgaagtagactaggagcatttggcgaggtcgccattttgaaaaaaa
aaatttaaaaatccaaataacaataaaactacttggagttgaaggatata
atcaaaaatgagaaacaaacacgattaacagatttgtaatcccttattct
caaattaaaatattgcttcatactgtttttaccttccaaaaacatctaaa
atctggcggactgttttacagtccgcctaggcaaaagcatattaccatat
actaccgggccacttatcagcgccaaaaagtccataaaaaagctctaagt
ggaccccgggctacggGACAagttgaagtttttacaagctcttatttgat
ttggttggtcgttaacctgtaataaaataacttttactttttctaaagtt
ttacttcaaatgaccaattagtgaagtatcttataaaaactccagctcat
cctgGATCAACACACATATCGTCAAAGATGAGAAAGTCTTTATGATTGAT
GCACGCTCTTATTTAAGTCAAAACTTGGAGCCTACTTTGATAGATTTGTG
GTAACTTATTCGTGATTTCCGTTTTCAAGGAATTTAGCACGAACTTCTTT
GATAAACGTACGAACTTATAAATACATGAAGTTGAACACCGGATCGATTC
AATCAAAACCCCAGCCCCAACGACCTCGTCTACCGCGAAAGTTACCTAAA
ATATAAGCAAAATGAAACTATGATTATGGCGAGAGGTTGGGAGGCAGGAT
CAGATCTATAGCTTCGATGTCACTAGTAAAATCGGGATTGCATTGCAGGC
CTTCGGCCCTTGCACAATCCTCAATTTCACGTCGTGAAATCTCTCTAGAT
CTAATCCTGCAGAGCGACATACCTATAATACATAACTTGAAGCCATCGCT
TCTAGCCACCTTGTTCAAAGCTCCTTTTAAAAGTACTTTATCATAACTAG
ACAGGATCCCTCCTTAATGTCCCGACAATACCTAGTCTTAAACATTGAAT
TCGAAGACCACAATCCTCGTTTCACAATATCCAGTAAGGGGATGCCCACT
GCCTTTGCTTTTGAGGTAGAAACATACCGTGTTGAATGACCTGTAAAAGT
GTACATGTCTATCCGCAAGTTTCAACATTGCCATGAGCTATCTGGAAACT
GTCTTTACTGCCACTTGGTCCCGAGGCTTTATATGACTCAACAGAAGCTG
AGTATCTTGTTCAGACCTCCATTCTTTAGACCTCGACAAATACTGGTCAA
TCGTTTTACTTCGTCAATTTAATGAAGTGAAACTGGTATGAACTTTTACC
TTTCACCAAGTATCTAGTATCAAATTAACAGATTTTTGAAGCTCTAACAG
CAGAAGCCATTGCAAGAAGAGA
Run BLAST on NCBI

transcript from alignment at sc0000132:474942..478437-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011796 ID=TCONS_00011796|Name=TCONS_00011796|organism=Clytia hemisphaerica|type=transcript|length=3496bp|location=Sequence derived from alignment at sc0000132:474942..478437- (Clytia hemisphaerica)
ACCAGACCATTTTTATGATTAAAGGTACAGAGTATTTTTGAATCCCCAAC
ATTCTAACAGAGGCTCAAAGTGAAAATCAGAACAATGGGTATTTTCATAG
CATCAAAAGGATGATGATTTACCTTACACCTATATAAGGAAATTACATTT
GATAATTATACGTAATCGGAAGGTCTTTAGTTCAAATAATGAAGAAAACA
AGCTCTGACTATGTGCTAAGGTAAACTTTTCTTTTTTTGTTGATTCGTGC
AGTTTGATTGTTTGGTAGCTTACCCAGCATTTGGAGGACGGTTGGACCAG
ACAATGGCTAACATCAACACGATGTTTCAATTGAAAGAAAAGACCAAAAA
ACCGTGTTATTTGATCACTGATGATGATATCGCTTTTCTCGTCGACAAGG
TTTAAAACGATTTCGAAATCGTGTTACTGTACATACAGGGTGTCCGGAAA
AAAGTATCGAGTCGTACCACTTCTATAGAAAGAAAGTTCTTCCTTGTGTT
TCACTAAATTTGCAAAGTTTCTCTCTGTGTCATTTTAATTCTCATAAGAC
ATCTTTTATGAATAACTTTTACAAAAAACAATTCTTAATAACTTTAGGGT
AACTTTTTTTTAATCATAATGACTATTGTAAAAACAATTATTGTATTGGT
ATATATTGTCTTACATTTTGTTAAACACACGCAACAACCTTCTACTCAGA
ATCATGTTCGAACTCGATTCTTTTTTTCCGGACACCCTGTAGAATAGAGT
CCCTGGCAAATTAGAAATTAGACGCTTGGTTGGCAAAGGTGATGGAGAAA
TTTTTTGAGTTGTAAAATAACTCGTGGAGAAATTCCTGATAATTTTTCTT
GCCATAAAACCAATTGCATGGAGACATGTTCCATGAATGGATATGATTTA
AGGAGTTTGAGGAGAATGCTGCAAAATGTTTCAATAATTTATGTTTGATT
TTTGTTCGCATGAGGGTCATTTTGCATGTAAGATAAAATTATCTATTGTT
TCTTATTTGTGATAAATACAGGGTGTCCCTAATTAAAGTATCGAGTCGAA
ACACAACTATGAGTAGAAAGTTTTATGTGCGTCATTACAATTAATTTATA
CGTTGTAACTACCTTTTGTAATAAGCCTGTGTGATGGAGAACGTTCTTAT
ATTTTAGCGATAACACACACAAACTTTTCTACTCAATCGCATGTTCAAAA
TCGATACTTTAATTAGGGACACCCTGTACAGGGTGGGCAAAAATATATTT
ATCTGACGAATTTTATAAACAATGAACGAAATGTCTCAAACAATGAAAAA
CTAATGACAGATTAATTTTTTTGGAATGTATTATGTATCATATTCTATGA
TGTATCTGACACGAGAAAAGTGTCTAATTGGAACGATTATGAGGATTTTC
TAGCGCAACTTGAAAAAGAGAAATAGAATTTCTATGGCACTAATTGCTCT
GTCATCAGCATTCTTTTTGTTTGACCATATTTTTTTGCCCACTCTATACT
CTATACTATAATCTCGCGATATTTCATTTTATTCTCCAGGGAAAGACAAG
AATAAAGGTGGAGAGAGAGTTGAAAGGTGGATGGTGTAGTTTAATTCCTA
TCGCATGCAAAGCAGAGAAAGTCACCACAACCGGATTCAAATGGAATTTG
GGTAAGATTCCTTTCCATACCTTTTTTCGAAATAGTGTCTGCATTATCTA
ATGTTACATAGACTTAACCAGTATTTTGCTGGTCAACATTAATGGCATCA
AACATTCATTTGATATTCTGAGTGATGGAATATCTATGTTCATCAAACGT
CTAAGCTCAATGAAATAAATCTTAAAATACTAGTGTCTAGCCCCACAACC
GTAGGTTCCTCTAATCACAGTGGCTTCCCAGATTCCTACTATTTCATTGA
TATTTAGACGGTGACTCGATGGAGTTCGGTTCATTGGTGAGCACATCAAA
TGCGTTCGGTGAAAATGTTGATCACGTGACAGTTGACACGTCACATCCAC
TGCTTATCACCTTTGGAATCAAAAGTTGAAACTAACGCTGGAACTTTCTA
GTCAACGGGACAAGTAGACTAGAGTCTACTTCTGGCTGAACTTTGCTTTT
TGATAATTTTTTATGACGCTGAGTCCAGTGAAGTAGACTAGGAGCATTTG
GCGAGGTCGCCATTTTGAAAAAAAAAATTTAAAAATCCAAATAACAATAA
AACTACTTGGAGTTGAAGGATATAATCAAAAATGAGAAACAAACACGATT
AACAGATTTGTAATCCCTTATTCTCAAATTAAAATATTGCTTCATACTGT
TTTTACCTTCCAAAAACATCTAAAATCTGGCGGACTGTTTTACAGTCCGC
CTAGGCAAAAGCATATTACCATATACTACCGGGCCACTTATCAGCGCCAA
AAAGTCCATAAAAAAGCTCTAAGTGGACCCCGGGCTACGGGACAAGTTGA
AGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAACCTGTAATAAA
ATAACTTTTACTTTTTCTAAAGTTTTACTTCAAATGACCAATTAGTGAAG
TATCTTATAAAAACTCCAGCTCATCCTGGATCAACACACATATCGTCAAA
GATGAGAAAGTCTTTATGATTGATGCACGCTCTTATTTAAGTCAAAACTT
GGAGCCTACTTTGATAGATTTGTGGTAACTTATTCGTGATTTCCGTTTTC
AAGGAATTTAGCACGAACTTCTTTGATAAACGTACGAACTTATAAATACA
TGAAGTTGAACACCGGATCGATTCAATCAAAACCCCAGCCCCAACGACCT
CGTCTACCGCGAAAGTTACCTAAAATATAAGCAAAATGAAACTATGATTA
TGGCGAGAGGTTGGGAGGCAGGATCAGATCTATAGCTTCGATGTCACTAG
TAAAATCGGGATTGCATTGCAGGCCTTCGGCCCTTGCACAATCCTCAATT
TCACGTCGTGAAATCTCTCTAGATCTAATCCTGCAGAGCGACATACCTAT
AATACATAACTTGAAGCCATCGCTTCTAGCCACCTTGTTCAAAGCTCCTT
TTAAAAGTACTTTATCATAACTAGACAGGATCCCTCCTTAATGTCCCGAC
AATACCTAGTCTTAAACATTGAATTCGAAGACCACAATCCTCGTTTCACA
ATATCCAGTAAGGGGATGCCCACTGCCTTTGCTTTTGAGGTAGAAACATA
CCGTGTTGAATGACCTGTAAAAGTGTACATGTCTATCCGCAAGTTTCAAC
ATTGCCATGAGCTATCTGGAAACTGTCTTTACTGCCACTTGGTCCCGAGG
CTTTATATGACTCAACAGAAGCTGAGTATCTTGTTCAGACCTCCATTCTT
TAGACCTCGACAAATACTGGTCAATCGTTTTACTTCGTCAATTTAATGAA
GTGAAACTGGTATGAACTTTTACCTTTCACCAAGTATCTAGTATCAAATT
AACAGATTTTTGAAGCTCTAACAGCAGAAGCCATTGCAAGAAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006618XLOC_006618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011796-exon-sc0000132-1575043694:478414..478437TCONS_00011796-exon-sc0000132-1575043694:478414..478437Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1575043694:478039..478185TCONS_00011796-exon-sc0000132-1575043694:478039..478185Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1575043694:476787..476898TCONS_00011796-exon-sc0000132-1575043694:476787..476898Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1575043694:474942..476530TCONS_00011796-exon-sc0000132-1575043694:474942..476530Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1510915933:478414..478437TCONS_00011796-exon-sc0000132-1510915933:478414..478437Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1510915933:478039..478185TCONS_00011796-exon-sc0000132-1510915933:478039..478185Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1510915933:476787..476898TCONS_00011796-exon-sc0000132-1510915933:476787..476898Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1510915933:474942..476530TCONS_00011796-exon-sc0000132-1510915933:474942..476530Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1491911889:478414..478437TCONS_00011796-exon-sc0000132-1491911889:478414..478437Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1491911889:478039..478185TCONS_00011796-exon-sc0000132-1491911889:478039..478185Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1491911889:476787..476898TCONS_00011796-exon-sc0000132-1491911889:476787..476898Clytia hemisphaericaexon
TCONS_00011796-exon-sc0000132-1491911889:474942..476530TCONS_00011796-exon-sc0000132-1491911889:474942..476530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:474942..478437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0386075	0	0	0	0	0	0	0	0	0	0	0	0.20702	0	0	0	0	0	0.0404591	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00011796 vs. Swiss-Prot (Human)
Match: TPK1 (Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.515e-29
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:   19 LKFDCLVAYPAFGGRLDQTMANINTMFQLKEKTKKPCYLITDDDIAFLVDKGKTRIKVERELKGGWCSLIPIACKAEKVTTTGFKWNLDGDSMEFGSLVSTSNAF-GENVDHVTVDTSHPLLITFGIKS 402
            LK D +V      GR DQ MA++NT+FQ    T  P  +I ++ + +L+  GK R+ V+  ++G WC LIP+     +VTTTG KWNL  D + FG+LVSTSN + G  V  VTV+T HPLL T  IKS
Sbjct:  117 LKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGV--VTVETDHPLLWTMAIKS 243
The following BLAST results are available for this feature:
BLAST of TCONS_00011796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPK11.515e-2946.51Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK... [more]
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