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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011779 ID=TCONS_00011779|Name=TCONS_00011779|organism=Clytia hemisphaerica|type=transcript|length=1264bp
GAGTTTCATCGCTAGGAggaaatgaaatgtttttggaTGCTCTCAAAGAA
TTGCTTGGAGGGAATTAGTTTGTGCGTTGATTAGTGATTTAGAACTCAGG
ATAATTAAGGGGATGATAAAGTGAGCGACTTTCACGCCATGGAAAAACTT
ACGCCAGTACTGATTGCGGTGGGCGTCTGCTTCGGTTTCATTCTCATCAT
ATTTGTTCTGATTGTCCGAAAATACGTTCAGTTGGTTCGGACAGAAGAGT
CGTTTCCCGGGTACAATGCGAGGAACAATAAATCGACTTCTTCTTCGCAC
CCCTTCATATCATCTTTCTTCCCTTTCTTCGACGTGACGAACGTGAATCC
ACAGATGCACACTCAGAGAGCACGAACGTGGAAcctgaagaaaacaaaaa
gtcaaaaaccgTTGCACAGGATCGAGTACGTTCACTGTCCGGGAAAAGCA
TTTCGACAATCACGACACAAAGGAACGCGTCTTTCAGCAAAGAGCAAGAA
AACCCCTCAAAAATACTCCTCTACTGCAGAACAAACGGTATGATTGAGTT
CACTACACATTATTTCTTCCCTGAGAGCTTGTTAGAAGTCCACATATGGC
GCGTCCATGGCTTCACCACCAAAGAACAAACACTGGATTTGAATGTTCAC
GTCCGCGCATTTTTGGAACCCGGAAAACTCCAAAAAACGGACACTGGCTC
GCAGATTGGACACACGCCATTCTTTAATGAGAAAATTCAATTTGAGGGAA
TTCATGAAACGGACTTGAAGAAATATCGGTTGGTTTTGAAAGCGTATAAT
AAAGAGAAACGAAAAGCGAAAGAACTTTTGGGAATTGTAAACATGGATTT
AACTTGgattaattattttgatgacaGCACTGAAGTTCATCATTCACCTT
TgttcgatttttagaaaatattttcgatCTACAgcgtgtccctaattaaa
gtatcgagtttgaacatgcgattgagtagaaaagtttgtgtgtgttatcg
ctaaaatataagaacgttctccatcttattacaaaaggtagttacaacgt
ataaattaatcgtaatgccaaagaaaaaagagggagagcttaaaatacaa
ttttgtgaacacgcacataaaactttctactcatagttgtgtttcgactc
gatactttaattagggacaccctgtacttcCCAATAAAATACTGTCAGTC
TAGTTGATTGCTAAAAACAAACATTTCACCAAGAGCATTATTAATATAGA
CTGTTATTCAGGAC Run BLAST on NCBI transcript from alignment at sc0000132:265973..269756- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011779 ID=TCONS_00011779|Name=TCONS_00011779|organism=Clytia hemisphaerica|type=transcript|length=3784bp|location=Sequence derived from alignment at sc0000132:265973..269756- (Clytia hemisphaerica)
GAGTTTCATCGCTAGGAGGAAATGAAATGTTTTTGGATGCTCTCAAAGAA
TTGCTTGGAGGGAATTAGTTTGTGCGTTGATTAGTGATTTAGAACTCAGG
ATAATTAAGGGGATGATAAAGTGAGCGACTTTCACGCCATGGAAAAACTT
ACGCCAGGTAAGGTTTTGATTTCACATTACGATCTATTTTTAAATGATAT
CGATAAAAGGACAGTGAAAGCATTACAACCTACAACCTTCTTCCCAAGGT
AGGTCAGTTTGGTCTAACTGTTTGAAATACTAAATTCTAAGTAGAGACAT
TATATTCCTCTACATACTTATAAACTGTTAGACTTCCGTGTGAGTATGTC
CAGTTTATAAGTCGGCTACTTCGCCAAATGCTGTAGCGAGTACCTCACCA
AAAACCGGGATTTTTTATCCCGTTTCTTAGTGAGTTCCACTTTGACGATT
TTCGAAAAATAGAAGCCTTTCAAGTGTTTTGACGCAAATTCTATTTTTTT
GATACTGCAGGAGCTTCAAACGTTTAAAGTGACGTCAAAAAATCGAATGT
TTAGAGCCCGAAAACCTGGGCTCAAAACATTCGAAAAAGTCGTAAAGTGG
AATAGACGTTACAGCGTAGAAAAAAAGCCGTGACGTCTAGTATAGGCTAC
AAATGCTGGATAAATAAGTTATTTAATACACCTTTCCCGAGTTTATTTCG
ACTTTTTGAAAAAACACTATTCCAAAACCCTGCTCTACTTGCATTTAATT
TAGAAAGATTCTACTACGAAATACGAAATCAAAAATAAATAATTATGTTA
AAAGGTTCTTGAGATATTTCAATTTTAAAGTTTTTTCTTAAACAAAAGTA
TCCCATGGAAACGACATAGAAACGAGGCCCGNACGAAATACGAAATCAAA
AAAAAAAAATTATGTTAAAAGGTTCTTGAGATATTTCAATTTTAAAGTTT
TTTCTTAAACAAAAGTATCCCATGGAAACGACATAGAAACTAGGCCCGGT
AGGATAAAATATTTTTTAAGAGAGGTTTGACTGTAAAAACAAAGGAATTA
AAACAGCCATAAAAAAGAAATGGAAAAAGCTTTTGATCTCAAATTTTCAG
AATGACTTTGTATCACCAAAAGCTTCAAAAATATCAAGTTCNCTTTTGAT
CTCAAATTTTCAGAATGACTTTGTATCACCAAAAGCTTCAAAAATCGTTT
CAAACTGGAGAGGTTGAAAAAAAATTGATAAACTCGGGAAAAGTGTATAC
TATTTCATTTCCATTTTACAGTACTGATTGCGGTGGGCGTCTGCTTCGGT
TTCATTCTCATCATATTTGTTCTGATTGTCCGAAAATACGTTCAGTTGGT
TCGGACAGAAGAGTCGTTTCCCGGGTACAATGCGAGGAACAATAAATCGA
CTTCTTCTTCGCACCCCTTCATATCATCTTTCTTCCCTTTCTTCGACGTG
ACGAACGTGAATCCACAGATGCACACTCAGAGAGCACGAACGTGGAACCT
GAAGAAAACAAAAAGTCAAAAACCGTTGCACAGGGTAAGAATCGCAAAAA
TTACAAATGCGAAAACCTTTTGATAGAATTTGAATAAGATTGAGTTTTTG
TACTCGTTTAAAAGACAATCTTGAGTTGGGTATTATAGTATGAAAAATCT
TTGATAGAAATTCAAAAATGAAAATAAAACACTTTCCCACAGGAGCAAAG
GGGGCGTTTCAATAGTATGCCGAACCTCAACCGTATCAGGAACGACAAAT
TCCCTTTAAATACGGATGACAACAAAAGTGTCCTCTCGGACCATGAAGAT
GACCAATGTGACGAGACCGAAACGCTAGTGATGACGTCAGAAGAACTTGA
TGAAGGAGAGGGAAGAGTGAAAAGTGGGAGCGTTCTTTTGCATGGTGAGT
GTTCTTGAGTTTCAAAAGCTTTTTCTTCTTAAAAATCTGAACTCATGCCT
ATAATTTTCATTGCTGAAACCACGTGGACGAGCTTTACTGATCCTACATT
TCAAAAAATTCAAATGGTGAAGGTGAAGTGGCACATGCTTTTCAGGTAGG
GCAAACACACCAAAATAGAAAAATCTATCCCTCGTTAGGTACATTATTAG
AAGAATTTGAGAAAAAGGTGAAAAACTTTGAGAAAATTCTGGCGAATTTC
ACTTTCACTGTTTGCAACATTTATCAAAATTTTCACAAAAGTGAGTCCCG
CGTAGGGTCCATCGGAAGGCAAGGGTAGTAACCCCCCCCCGGGTCATAAT
GTTATGGCCTCCATCAAAAACTCAGTTAGGAGCTTTTTGTTTACACATTC
CAAGACCTTAACCTTTTCAGTCCCAGAGAACCGCATTGCGGGTTTCTCTG
TGAACAAACTTCAACGGGCTACAGTATATCTCCAGAACTAAAAGATTTCC
AGAACCCTCGTAGCTACCATTAAAAAGAGGATGAAATTTTAAAGAAAAAA
GTTGGTTTTGGGGCACCCTTACCCCATGACTGATGTCTTGCTGACGCATG
ACTTCGGTATGAAACTTTTTAATTTTTCTTTCAAAAAGTGCAAAGCTCTG
GGACTGAAAGGGTTAAAATGTTCTTAACTTGTTCTTAACATGTTGGGCAT
CTAAGTTTCATGTTCTTATATAGTTTGTTCTTATAAAAAACGTGTAATAT
CCTGAAACTTTATACAATAAATTATAGAATATGGAAACTTACATTATTTA
CTCAAAGACTGTTAGACTTAACATTGATTACATAGTTTTAAAAGTTTGAA
GATTAATTTGTGTAGATTCCTTGAACTATAGACTTTTGAATATCCTCTCC
CTTTTCATTTTGGTGGAAAAAAGTTGTTGCGGTTGCTTTAAACATTTCAA
TAAACACTTTAAAAATACTTATCCTGATGAAGTTTTTAAGTGCATAATAT
TTTATGAATTAAAAACAGCCTTTATCATATTTCGTTCTAGATCGAGTACG
TTCACTGTCCGGGAAAAGCATTTCGACAATCACGACACAAAGGAACGCGT
CTTTCAGCAAAGAGCAAGAAAACCCCTCAAAAATACTCCTCTACTGCAGA
ACAAACGGTATGATTGAGTTCACTACACATTATTTCTTCCCTGAGAGCTT
GTTAGAAGTCCACATATGGCGCGTCCATGGCTTCACCACCAAAGAACAAA
CACTGGATTTGAATGTTCACGTCCGCGCATTTTTGGAACCCGGAAAACTC
CAAAAAACGGACACTGGCTCGCAGATTGGACACACGCCATTCTTTAATGA
GAAAATTCAATTTGAGGGAATTCATGAAACGGACTTGAAGAAATATCGGT
TGGTTTTGAAAGCGTATAATAAAGAGAAACGAAAAGCGAAAGAACTTTTG
GGAATTGTAAACATGGATTTAACTTGGATTAATTATTTTGATGACAGCAC
TGAAGTTCATCATTCACCTTTGTTCGATTTTTAGAAAATATTTTCGATCT
ACAGCGTGTCCCTAATTAAAGTATCGAGTTTGAACATGCGATTGAGTAGA
AAAGTTTGTGTGTGTTATCGCTAAAATATAAGAACGTTCTCCATCTTATT
ACAAAAGGTAGTTACAACGTATAAATTAATCGTAATGCCAAAGAAAAAAG
AGGGAGAGCTTAAAATACAATTTTGTGAACACGCACATAAAACTTTCTAC
TCATAGTTGTGTTTCGACTCGATACTTTAATTAGGGACACCCTGTACTTC
CCAATAAAATACTGTCAGTCTAGTTGATTGCTAAAAACAAACATTTCACC
AAGAGCATTATTAATATAGACTGTTATTCAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011779-exon-sc0000132-1575043694:269600..269756 | TCONS_00011779-exon-sc0000132-1575043694:269600..269756 | Clytia hemisphaerica | exon |
| TCONS_00011779-exon-sc0000132-1575043694:268223..268485 | TCONS_00011779-exon-sc0000132-1575043694:268223..268485 | Clytia hemisphaerica | exon |
| TCONS_00011779-exon-sc0000132-1575043694:265973..266816 | TCONS_00011779-exon-sc0000132-1575043694:265973..266816 | Clytia hemisphaerica | exon |
| TCONS_00011779-exon-sc0000132-1510915933:269600..269756 | TCONS_00011779-exon-sc0000132-1510915933:269600..269756 | Clytia hemisphaerica | exon |
| TCONS_00011779-exon-sc0000132-1510915933:268223..268485 | TCONS_00011779-exon-sc0000132-1510915933:268223..268485 | Clytia hemisphaerica | exon |
| TCONS_00011779-exon-sc0000132-1510915933:265973..266816 | TCONS_00011779-exon-sc0000132-1510915933:265973..266816 | Clytia hemisphaerica | exon |
| TCONS_00011779-exon-sc0000132-1491911889:269600..269756 | TCONS_00011779-exon-sc0000132-1491911889:269600..269756 | Clytia hemisphaerica | exon |
| TCONS_00011779-exon-sc0000132-1491911889:268223..268485 | TCONS_00011779-exon-sc0000132-1491911889:268223..268485 | Clytia hemisphaerica | exon |
| TCONS_00011779-exon-sc0000132-1491911889:265973..266816 | TCONS_00011779-exon-sc0000132-1491911889:265973..266816 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:265973..269756 - |
Blast
The following BLAST results are available for this feature:
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