TCONS_00011772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011772
Unique NameTCONS_00011772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011772 ID=TCONS_00011772|Name=TCONS_00011772|organism=Clytia hemisphaerica|type=transcript|length=2348bp
AAATTTCCTCCAGTAGTCCATTAGGTAGAGTAAACGATACCTTTGGTTGA
GACATACAAATtaaatttgtgttttccaaaaGAATGGTCTAGGAAAGCAC
ACAATTAAGCTACCCCCGATCCGTCTAGCAAATGGAATTCCCAAGAAAGA
TGAAGTTGTATTTAAATCAACGCCTCAACAACCGCAACGTCATCGAAATA
GCGGATTTTTAGggattttcttaaattttacgAGATGAAGGCATTTTGTA
TCATTTTACAGGGCTGATCCAAGACAACATGATGAATACGCGTCGTTTGA
GCACAAATATGATAtgtttatatggaaaaagtttatactgttttgaaaaa
actgaaataGAGTGTCTTACGGTCCTTGAGGCTATATAAAATATATCTCC
TCTTCTTTCAGGCATACTCATAGGAGTGGGTGTAGTTTTAGGTTTTCTCC
TAATTGTCTTTGTCTATGCTGTCCGAAAATATCTTTTGGTTCGGACAACC
CGTTTCACACTACTAACCGAGGAAAAGGAGACTGAAGATTTCAAGAAGTT
CAAAGGAGGCTCAGAAAGTGGTTTTGAGGTTCCCTATTATACGCGTCCTG
TGAGAAGACAAGTTCCAAATTTCGGTTTGAGAGAAGGTCCTTTAAATGAG
AAGCGAAAAAAGTCCTCAGTCACCGTCTTAGACACACAAAGTTTCCATTC
CGGACATACCATAGGAGGTCGGCGTAAGAAGAACTCCAGGGTGTCACACA
GTTCCATAGGGGACAAAGAGAACCAGCTGGTGGAATCAACCCTTCCTGCT
GACATCCACGGAGATCATGACGTGTTTGCGGAGGCAGCACCCAAATTTGA
TAAAACACAACGGAGGATCAGTACGGCCGTGATCAATGTTTTAGCGCTAC
AGGGTAAACAAGCACCACCGTCATCAAGAGTTTCAATCACAGAAGATATG
TTTATAAGAGATTTGGAAATTAACAACGATACCTTTCTCAACGTTGACAG
AAACAGCAATGATGGATCTAGTGTCCATTCCCTTCCCGATGTCGTTGATT
GCCCTAGCGTTGGCACTGGCGTCAAAAGACGCGTTGTAGATCGCCGACAA
TGTGGATCCGATAACACGCCTTTAAAACGAACGTATAAGAAGTCAGGGAA
AATTAAATTCACGACCAGATATTTTCACGAAGATAATATGCTAGAATTAC
ACATTCATAAAGCGTACGATTTGAAGTTGAGAAAAGAGCAAATCAACCCT
ACTTGCTTTGTCCGAGTATACTTAGTACCTGGTAAAcgacaaagaaaaga
aacacaATCTGCCAGAGGGCTTGAACCGTTTTTTAACGAGAAAATACAAT
TCGTAGATTTAGAGGAACGCAATTTGATAAAATACCGAATCAAGATGAAA
GTATATAATAAGGAACGattgaaaaagaaagagctTTTAGGAGAAGTTGG
AATTGCTTTGAATTCCATCGACATCAATCTGAAAGAAACATTCACACCTG
ATCTCTTCTTACAACGATCTGAGAGTTCGTTAGCATCAGTGAGCATATTG
TTGTGTCACCAAGCCACATATAACAAATTGGAAGTTACCGTTCAAAAGGC
GTGTAACTTGCCACGAATCGGGATGGGCGGACAACCAAGTACATACGCCA
CCGTTCAACTTTTTAAAGAAGATTCAGTAGACAAAAAAGACATCGTGGTC
AAGCGAAACAGCCGTGATCCCGTCTTTAAAGAAATGGTGGAATTTGACGT
AAACATAGACGCTAATTGTCCTTTATCACGTTACTCGCTCGTTATCTCCT
TAATACACAAGGCAGGGATCGTAGGGAGAGATGAGATTCTAGGTCACGTG
ATATTCAGTATTTCGTCACCACAAAAGAGTGCAGCGGAACATTGGAAGTT
CATTTGCGACACTCCGCATCAGCATTTGGAACAAAGTCATTCGTTGGTTG
ACCCTGATGAATTGTTAAACTCAAATGAGTCTTCATCAACGTGAGAGAGT
GTTAATTATTCAGGGGAGGATGTTGATTGGCCGGTTTCACAACACGAGTG
CATGGTCAGAGTCTTAGAAAGGAACACAAATGGTCATGACATGAGATATA
CGTCTGAGTATGAAACAGTTTTCGGTAGTTAGTACATACTCAAAATTCTG
GTTCATTGATAAACATTTAAGAAGCTAATGGTTTACAACCCGATATAAAG
TTGCATGGAATAATGGGAACATACAGTTAGTGAACATTGTCAATATTTTG
AAACTTCTTTGAttatcaaatttcttttaaatgatagattttataaattt
caaaacagaaacatattaccattttgcatttCATACCCTTCTATCAGG
Run BLAST on NCBI

transcript from alignment at sc0000132:250925..255714-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011772 ID=TCONS_00011772|Name=TCONS_00011772|organism=Clytia hemisphaerica|type=transcript|length=4790bp|location=Sequence derived from alignment at sc0000132:250925..255714- (Clytia hemisphaerica)
AAATTTCCTCCAGTAGTCCATTAGGTAGAGTAAACGATACCTTTGGTTGA
GACATACAAATTAAATTTGTGTTTTCCAAAAGAATGGTCTAGGAAAGCAC
ACAATTAAGCTACCCCCGATCCGTCTAGCAAATGGAATTCCCAAGAAAGA
TGAAGTTGTATTTAAATCAACGCCTCAACAACCGCAACGTCATCGAAATA
GCGGATTTTTAGGGATTTTCTTAAATTTTACGAGATGAAGGCATTTTGTA
TCATTTTACAGGGCTGATCCAAGACAACATGATGAATACGCGTCGTTTGA
GCACAAATATGATATGTTTATATGGAAAAAGTTTATACTGTTTTGAAAAA
ACTGAAATAGAGTGTCTTACGGTCCTTGAGGCTATATAAAATATATCTCC
TCTTCTTTCAGGCATACTCATAGGAGTGGGTGTAGTTTTAGGTTTTCTCC
TAATTGTCTTTGTCTATGCTGTCCGAAAATATCTTTTGGTTCGGACAACC
CGTTTCACACTACTAACCGAGGAAAAGGAGACTGAAGATTTCAAGAAGTT
CAAAGGAGGCTCAGAAAGTGGTTTTGAGGTTCCCTATTATACGCGTCCTG
TGAGAAGACAAGTTCCAAATTTCGGTTTGAGAGAAGGTCCTTTAAATGAG
GTAGGTCTTCGAACGTGAATTTTTTATCAAGAATGTGAAACCAAGATAAA
GAGCACAAATTACCTTTTAAATTTTTTAAATTTTGTTCTTTGTGCCGCTG
TGAATATGGCTAAGCACGCCATCGCAATCCTAAGAAACCTCTTATTGACC
GAGAATTGGAGATCAGAAAGAACATTATATCACTAGCTTTACTTCTGAGA
TACGATGATAGAGTAATCCAGCTCTCCATTCTCCTATAACCTCAAGCAAA
CTTACTCTGGCATGTGTTTCATATTCAAAATGCAAGAAAACTCCTAACCA
AGAAAACATGGTCATTATTCATGTCTTTGAGTCAATTTTCTTCTCAGAAG
CGAAAAAAGTCCTCAGTCACCGTCTTAGACACACAAAGTTTCCATTCCGG
ACATACCATAGGAGGTCGGCGTAAGAAGAACTCCAGGGTGTCACACAGTT
CCATAGGGGACAAAGAGAACCAGCTGGTGGAATCAACCCTTCCTGCTGAC
ATCCACGGAGATCATGACGTGTTTGCGGAGGCAGCACCCAAATTTGATAA
AACACAACGGAGGATCAGTACGGCCGTGATCAATGTTTTAGCGCTACAGG
GTAAACAAGGTAGGGCATTAATTCTTCTTCTTCTATTTTACAATGTCGTA
CTAATTAATCAACATAAATTTGAGTTAAGTACTTAGCTCAAGCCTAAACT
GAACATCTAAAAACTAATCAAGAAAAGCTTGAGGTCTCTTTAAAAAAGTT
TGATTCTCTGAAAGGAAAGGAAACATAGACATCTTTAAATATCTTCAACC
GGAAAGATCAAGAATTATCATTTAAAACAAAACAAATTTTCCACATCTTT
ANTCTCTGAAAGGAAAGGAAACATAGACATCTTTAAATATCTTCAACCGG
AAAGATCAAGAATTATCATTTAAAACAAAACAAATTTTCCACATTTTTAC
AGCACCACCGTCATCAAGAGTTTCAATCACAGAAGATATGTTTATAAGAG
ATTTGGAAATTAACAACGATACCTTTCTCAACGTTGACAGAAACAGCAAT
GATGGATCTAGTGTCCATTCCCTTCCCGATGTCGTTGATTGCCCTAGCGT
TGGCACTGGCGTCAAAAGACGCGTTGTAGATCGCCGACAATGTGGATCCG
ATAACACGCCTTTAAAACGAACGTATAAGAAGTCAGGGAAAATTAAATTC
ACGACCAGATATTTTCACGAAGATAATATGCTAGAATTACACATTCATAA
AGCGTACGATTTGAAGTTGAGAAAAGAGCAAATCAACCCTACTTGCTTTG
TCCGAGTATACTTAGTACCTGGTAAACGACAAAGAAAAGAAACACAATCT
GCCAGAGGGCTTGAACCGTTTTTTAACGAGAAAATACAATTCGTAGATTT
AGAGGAACGCAATTTGATAAAATACCGAATCAAGATGAAAGTATATAATA
AGGAACGATTGAAAAAGAAAGAGCTTTTAGGAGAAGTTGGAATTGCTTTG
AATTCCATCGACATCAATCTGAAAGAAACATTCACACCTGATCTCTTCTT
ACAACGATCTGAGGTAAATAAAATCACAATCATCATCTGTAATGCTCAAG
GCTGTATGTTAGTGATGTAAGAATGAATAATATAGAGTTTTAGCTAAAAA
TCTTCAATATCTACTTACTGAAGATTGTGGCAAACACCTCTTTCCTCAAT
TAATGTTATTGGTTTGAAGGCTTCTTTCAGAACTGGATGACATTGATAAA
GAGGTGAAAGAATTGACCACAGTTTTAGTCAGAGAGATTGCAAAGTCATG
ATGAAATAAACTCTGTTAAAATGATTTCAATCTATTTTGCGTTTCAGAGT
TCGTTAGCATCAGTGAGCATATTGTTGTGTCACCAAGCCACATATAACAA
ATTGGAAGTTACCGTTCAAAAGGCTTGTAACTTGCCACGAATTGGGATGG
GCGGACAACCAAGTAAGTACTTAATCACCCCAAAACCTGCGGATGACGTA
GGTCACCTTAAGTTGACTTGTTCTTTTATCGCATTCGCCATCAACCGTTT
ATTATACATAAACAAAGTTAAAACAAATCAAAATTTAAAATCTACTAGGT
CCAAAGCTTCGTTTTCTCTCGATCATTTATCCCGATCTGTGTTTTGGAAG
GGATGACATTACTATAACAAGTAAGATTAGAACATTAAGGTTACCAACTT
ACGAGTAACTTAACTTCTCAACCTTCATTCAAAGGTACATACGCCACCGT
TCAACTTTTTAAAGAAGATTCAGTAGACAAAAAAGACATCGTGGTCAAGC
GAAACAGCCGTGATCCCGTCTTTAAAGAAATGGTGGAATTTGACGTAAAC
ATAGACGCTAATTGTCCTTTATCACGTTACTCGCTCGTTATCTCCTTAAT
ACACAAGGCAGGGATCGTAGGGAGAGATGAGATTCTAGGTCACGTGATAT
TCAGTATTTCGTCACCACAAAAGAGTGCAGCGGAACATTGGAAGTTCATT
TGCGACACTCCGCATCAGCATTTGGAACAAAGTCATTCGTTGGTTGACCC
TGATGAATTGTTAAACTCAAATGAGTCTTCATCAACGTGAGAGAGTGTTA
ATTATTCAGGGGAGGATGTTGATTGGCCGGTTTCACAACACGAGTGCATG
GTCAGAGTCTTAGAAAGGAACACAAATGGTCATGACATGAGATATACGTC
TGAGTATGAAACNATCTGAAAGAAACATTCACACCTGATCTCTTCTTACA
ACGATCTGAGGTAAATAAAATCACAATCATCATCTGTAATGCTCAAGGCT
GTATGTTAGTGATGTAAGAATGAATAATATAGAGTTTTAGCTAAAAATCT
TCAATATCTACTTACTGAAGATTGTGGCAAACACCCCTTTCCTCAATTAA
TGTTATTGGTTTGAAGGCTTCTTTCAGAACTGGATGACATTGATAAAGAG
GTGAAAGAATTGACCACAGTTTTAGTCAGAGAGATTGCAAAGTCATGATG
AAATAAACTCTGTTAAAATGATTTCAATCTATTTTGCGTTTCAGAGTTCG
TTAGCATCAGTGAGCATATTGTTGTGTCACCAAGCCACATATAACAAATT
GGAAGTTACCGTTCAAAAGGCGTGTAACTTGCCACGAATCGGGATGGGCG
GACAACCAAGTAAGTATTTAATCACCCAAAACCTTCGGATGACGTAGGTC
ACCTTAAGTTGACTTGTCCTTTTATCGCATTCGCCATCAACCGTTTATCA
TACATAAACAAAGTTAAAACAAATCAAAATTTAAAATCTACTAGGTCCAA
AGCTTCGTTTTCTCTTGATCATTTATCCAGATTTGTGTTTTGGAAGGGAT
GACATTACTATAACAAGTAAGATTAGAACATTAAGGTTACCAACTTACGA
GTAACTTAACTTCTCAACCTTCATTCAAAGGTACATACGCCACCGTTCAA
CTTTTTAAAGAAGATTCAGTAGACAAAAAAGACATCGTGGTCAAGCGAAA
CAGCCGTGATCCCGTCTTTAAAGAAATGGTGGAATTTGACGTAAACATAG
ACGCTAATTGTCCTTTATCACGTTACTCGCTCGTTATCTCCTTAATACAC
AAGGCAGGGATCGTAGGGAGAGATGAGATTCTAGGTCACGTGATATTCAG
TATTTCGTCACCACAAAAGAGTGCAGCGGAACATTGGAAGTTCATTTGCG
ACACTCCGCATCAGCATTTGGAACAAAGTCATTCGTTGGTTGACCCTGAT
GAATTGTTAAACTCAAATGAGTCTTCATCAACGTGAGAGAGTGTTAATTA
TTCAGGGGAGGATGTTGATTGGCCGGTTTCACAACACGAGTGCATGGTCA
GAGTCTTAGAAAGGAACACAAATGGTCATGACATGAGATATACGTCTGAG
TATGAAACAGTTTTCGGTAGTTAGTACATACTCAAAATTCTGGTTCATTG
ATAAACATTTAAGAAGCTAATGGTTTACAACCCGATATAAAGTTGCATGG
AATAATGGGAACATACAGTTAGTGAACATTGTCAATATTTTGAAACTTCT
TTGATTATCAAATTTCTTTTAAATGATAGATTTTATAAATTTCAAAACAG
AAACATATTACCATTTTGCATTTCATACCCTTCTATCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006609XLOC_006609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011772-exon-sc0000132-1575043694:255065..255714TCONS_00011772-exon-sc0000132-1575043694:255065..255714Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1575043694:254456..254717TCONS_00011772-exon-sc0000132-1575043694:254456..254717Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1575043694:253502..254112TCONS_00011772-exon-sc0000132-1575043694:253502..254112Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1575043694:253143..253217TCONS_00011772-exon-sc0000132-1575043694:253143..253217Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1575043694:251906..251945TCONS_00011772-exon-sc0000132-1575043694:251906..251945Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1575043694:250925..251634TCONS_00011772-exon-sc0000132-1575043694:250925..251634Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1510915933:255065..255714TCONS_00011772-exon-sc0000132-1510915933:255065..255714Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1510915933:254456..254717TCONS_00011772-exon-sc0000132-1510915933:254456..254717Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1510915933:253502..254112TCONS_00011772-exon-sc0000132-1510915933:253502..254112Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1510915933:253143..253217TCONS_00011772-exon-sc0000132-1510915933:253143..253217Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1510915933:251906..251945TCONS_00011772-exon-sc0000132-1510915933:251906..251945Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1510915933:250925..251634TCONS_00011772-exon-sc0000132-1510915933:250925..251634Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1491911889:255065..255714TCONS_00011772-exon-sc0000132-1491911889:255065..255714Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1491911889:254456..254717TCONS_00011772-exon-sc0000132-1491911889:254456..254717Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1491911889:253502..254112TCONS_00011772-exon-sc0000132-1491911889:253502..254112Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1491911889:253143..253217TCONS_00011772-exon-sc0000132-1491911889:253143..253217Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1491911889:251906..251945TCONS_00011772-exon-sc0000132-1491911889:251906..251945Clytia hemisphaericaexon
TCONS_00011772-exon-sc0000132-1491911889:250925..251634TCONS_00011772-exon-sc0000132-1491911889:250925..251634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:250925..255714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.116783	0.124001	0.0285545	0.0306216	0.454556	1.31874	7.08548	5.59048	3.73368	4.43816	2.29936	2.26322	2.72596	2.00574	4.6882	2.77677	1.26823	1.42709	1.88176	1.61533	0.525056	1.02794	0.58064	0.422528	1.29475	1.15267	0.581318	0.937948	0	0.00976267
Blast
[Close]
BLAST of TCONS_00011772 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 3.312e-24
Identity = 75/270 (27.78%), Postives = 137/270 (50.74%), Query Frame = 3 
Query: 1146 GKIKFTTRYFHEDNMLELHIHKAYDLKLRKEQINPTCFVRVYLVPGKRQRKETQSAR-GLEPFFNEKIQFVDLEERNLIKYRIKMKVYNXXXXXXXXXXXXVGIALNSIDINLKETFTPDLF-LQRSESSLASVSILLCHQATYNKLEVTVQKACNLPRIGMGGQPSTYATVQL-FKEDSVDKKDIVVKRNSRDPVFKEMVEFDVNIDANCPLSRYSLVISLIHKAGIVGRDEILGHVIFSISSPQKSAAEHWKFICDTPHQHLEQSHSL 1946
            G+I+F+  Y  +++ L + I KA +L  +        FV++YL+P K+ + ET+  R  L P +NE   F       +++  + ++V + +R  + + +GEV I LN +D+   +TF  DL        S   + + LC+  + N + V + KA NL  + +GG    Y  V L +K+  V+KK  V  + + +P+F E   FD+  +    L   +++I+++ K  +  R++++G +  S  S      +HWK +   P Q + Q H L
Sbjct:  137 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEK---LRETTIIITVMDKDKL-SRNDVIGKIYLSWKS-GPGEVKHWKDMIARPRQPVAQWHQL 401
The following BLAST results are available for this feature:
BLAST of TCONS_00011772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT73.312e-2427.78Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3[more]
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