TCONS_00011763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011763
Unique NameTCONS_00011763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011763 ID=TCONS_00011763|Name=TCONS_00011763|organism=Clytia hemisphaerica|type=transcript|length=2829bp
aaagaattaaaaaacaaaacggGTATGATTCGTTTACGAATGCAGAAATA
CATGGAGAGAATAAGCGGTGATGAAAGTGCTGGTAGTGCTGGTGGTGGTG
GTGCTGGTGGTGGTGGCAAATATTACGCCAGTGAAACAATCACCGAAGAA
AGTGAAAACGATATCGACGATCACGATTGCACGATGGAATCACGTCCAGG
ACCTGAGGGTGAATCTTCAAGAACAATGCCCACTTCTTCAGAGGAACCAG
CATCGCCAAGTATTTCAGGAGATGGCGCttctttgaaattctgtaaattt
atcaagcTGGGTTGTAAGTTCAAGGGAAATCGATTCGAGGTCGATTTACA
TATGGATATCGCTTCCGAGACACATTTAGATCTGGTCTGTAAATCTATCA
ATGAAATCAAAACAGAATATATTAAGAAAGAAAACAAGGTGATAGCGAAA
CATGACAATAAAATTAAACTGGTGCAAGATTATATCTGTAAGCAGAATGT
TGTTATCAAAGATCTTCACGAAACAAACCGTACGTTGGAAACGAACTCAA
GAAATATGCAAAACCAAATCAAAGACTTGGCGTCCAAAACGGAGATGTTT
ATGGAGGAAATTACTCGCTTGAAAGTACAGGCCAATCAACTTCAAGAAGA
AATGAATGAATCACGTGACACTAATTTCACTGGATCTCTTTTATGGAAGA
TTAAGAACTTTTCGAAACACATGCAAAACGCAGTTAATAAAACGGAACTT
TCAGTATACAGCCCACCTTTCTTTACCAGTCGATACGGGTACAAAGTAAG
GGCGCAACTTTTCGTAAACGGACTTGGCTCGCAAACAGGAGAGTACATGG
CTATATATTTCCATATTCTCCCTTCAGAACATGATGATATATTAAGATGG
CCTTTCAATCACAAAATCACTTTTTCTCTTCTCGAACAAACGCCAGACCA
GACGAACGTGACGTATACTTTAGTGCCGACGCCGAACGAGGACAGTTATA
AACGGCCTTCGGATAAAATGAGCGACGGAAAAGGTTTCAATCGATTCATT
TCGTTGGACGCCCTGAAAAAAGGGAAGTACATTAAAAATGATTCGATATT
TGTCAAAATTCGAGTTCATTGTAAAAATACGAGCAGGAATCACGAATCTT
AGTTTTTTATCTAAATTATCTTAACTTATCTTTTGTAAAATAGATTTTCA
ATCAATCGCTTTTTGAAGCCCGTCTCTAGTCGAATAAGCCATAGTTCAGG
CGAAATATATGAAGTCACTGAATAATTTCATGTTTTGAGAATTTCTTGGT
TTCCTTCGGGAAAAATGATGACGACAacttgaaagattgttttagCCAGA
TCGATTtgtctttttttgactttctgtAGAATATCATCTTAAAATAGATC
TATattaatattatattataaGACTGTAAATTTACAATATAATATTTCTA
CGTTAAAGAATTATTCGATGCATTTGAACATCATCTTGAAAATTAAGAAG
CACAATTGATCAATAGAAATCAAACTTCCGAAATCGCCTTGGAGAAAATA
CATGGAGTTATCTTCGATATTCCAAGGAATGATCGAACTTCAGGGTTTAA
GAAAACTATCACCATCCCCATATATTCACAATGCATAATCCATGATAATG
CGCcaagaacaaagaaaatgtcttACTCAAGATTGCAAATAAAATTCAAT
AGTGAACTTCATTCCCGAGGATATTTGGACTTGTATGACAAATCCGTTTG
CTCACACTAGCCAAATTTATCATccaaaatatgttttcatgaTCGATCTT
TTGCTTTGCGTCTATTAGTCGTTGGGTAAAATCGATGAGTCGTCGTAACG
ACATCAGCTTTGTCGTACTTTCTGGCAGGTGGCAAAAATTCTTTCATGTT
ATCTTGAGGATATTTCTCCTTGATCTTTTGCCGTGTTCCGTACAGCTTCA
TATCATGACGTAATTTAAAGTAATCCATGACGTCATAAGCAATAAGGACA
GTCAGTGCAAGAATGACCAGAAGATCTTGAACGTCCatcctcaaaatgtt
ctttcaGTGGAACTGCTCCAAACCATCAATCATTTTCTCCCTTTTTCCTT
CAAATCGGTTTTGATATCTTAATATTAAAAGTGATTTGATAAATAAAACC
TTAATGTTAATCCTGGCCCACTAACCCCTGTTATTCCATTTAACCTAAAC
TGTGAAAACGTTCAGCAAACTGTATAATCAAGATAGGaactgtaaaaata
aaactgaacGAATTGATCACTTTCTTTCTTCGACCAAAAGTAAAACTTCA
GCCATCGCCAATGTTTCCCAAAATTGTTTACCATTTTGATTTAAAGTTCC
AGACTCATTtcttcaagaaattgaaaacttgaaCTTCAAGAAATCTGATC
AGAAAAGATCATCCCAAAAGTTTCTATATCATCTcataaaagaaattttg
aattctCGTCTTATTTTGATGAAGTGAAGTGAGacaagaaaaaagagaaa
aggaaGCATGAAAAAACTGAGGTTTTGAAGAAAGGAAGACAAAAACACCT
GCACCACTAACTAGACTAGAAGTAGTTATCACTTTCatctcttttatttt
aaagtttatcatatttcaacattttttaccAGTCTGAACTTCCACTTCCA
AAACTGTTTACTTGTCCTAGCAGTATGAACTTAAAAACTGTAATAAATCG
ATTGATAATTGATGAAAAGAATTCCTACTTATCAATAAATTCCATTTGAT
TCGATGATGAATTTACTTTAAATGGGCCCCACAGTTTGGGTGACAAAATG
AAAGTTACGTCCCAGTACACCAATTGAAA
Run BLAST on NCBI

transcript from alignment at sc0000132:221453..225871-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011763 ID=TCONS_00011763|Name=TCONS_00011763|organism=Clytia hemisphaerica|type=transcript|length=4419bp|location=Sequence derived from alignment at sc0000132:221453..225871- (Clytia hemisphaerica)
AAAGAATTAAAAAACAAAACGGGTATGATTCGTTTACGAATGCAGAAATA CATGGAGAGAATAAGCGGTGATGAAAGTGCTGGTAGTGCTGGTGGTGGTG GTGCTGGTGGTGGTGGCAAATATTACGCCAGTGAAACAATCACCGAAGAA AGTGAAAACGATATCGACGTAAGTTCATGGTGTAAAGAAAGAAAGGAACT TGAACTCTTTTTTTACTTACTGGGGTCATTGAGGCTCAACCGGATTGTAA TTTTACTAATTCTCATTTAATTTCTACTTGCAGGATCACGATTGCACGAT GGAATCACGTCCAGGACCTGAGGGTGAATCTTCAAGAACAATGCCCACTT CTTCAGAGGTAAGGGATGAAACTTGTGACGGATACCAAGGGATGATGTTT CCAAATAGGGTTGCAAATGGCCCCACACTTCGAATGGTCTTTATAAGGAT TACACTTCATCTTAACTCAATGAACAAATGAAACTTTTGAGGATGATGAG GTTCATTGACCACAAGGGGCGTTCTTTAACGTGCTTTATGAGATTTTTAT GACCAACAAATGATTATAAATTTGAATTTTTTTCTCATGATTTCCCATGG TATGGCTAAACTATGAATGGGTTTAGAAGTATTGAGCCCTTCAACGTTAT GATTACATGACATGGGCCTGTTCTGTACGATTTCTCTGTTGATAAATTTT TGTAAAAGAAGGTGGTTCAATTCCTTTTTTGAAGTAAAATGTTTCTTAGG ATTTGTCCGTACAATATCTTGTTTCAGTTTTGAAGTTTGAAACTGAGATT AGGCCAAAGGGGAAAGATTCTTTCCTCTAGGGAAACATAATCTTTGGGAA ATATTTGAATTCTAAAGAAAGTTTATTTCTCTTTTTTTCGTGAGCAGTGA AAAATATCATTTTTCGTTATGAAGGATGTCAAAGTTTAAATCCCTTTTCT TCATCCATCCATCATCAATTCTCTTTTCCATTCTCATAATCGGTTGAGAT ACAACACAGATGTTTTGTGTCTTTCTTTTTCCTGTTCCTCAACTGATAGT ATACTGAGTATATCTTGTTCGAGCAAAATATAATGTTCAAGAAACTTTTT TTCGGGATTTGCTTCAGGGTTGAAACATTTTTTAACGTTTTTTTTTAAAT TGCTCGATTAACTAAAGGAAACAAGATGCAAAATAACGAACAAAAAGTAA AATCAACTTTGATATTTTCTGGTGTGAAATCATTATTTGACTGACTCTTG CTTTATTAAGTTATTGTACATATTAAAATCCCACTTCAATACAACAAAAT TTGTACTTTTAAAGTAAAAAAGCCTTGTAAGATTAAGAAAACAAACATTT TCGAAGATCGTATTCTTGATCCCATGTTGAGATAACTTCGTTTGTTTGGA TTTTCGTTTACAAAAAATCATTAAAATATCAGAAAAAAAGTTAGAATCTG AAGAAATTGCTTTTAACCTACTAAAATAAAAAAGACTTACCTACGCACTT AAACGCCCCTTCATTCAAAATCAGTTTTTTATCTGTTAATTTTGTTGACA ATTGTTGAGATTCTGTCGCAATTTTAAGCTATAGAATTATTATTCACGTA CCATCTTCCTCCTGTGCAAGAAATTCATTACAATTCTTTTCCTTACCGTC AATAGGAACCAGCATCGCCAAGTATTTCAGGAGATGGCGCTTCTTTGAAA TTCTGTAAATTTATCAAGCTGGGTTGTAAGTTCAAGGTAAGAAAACAACA GAAATTTCACTTTACAAATACTCGAGTCATGGTGAAAAAAATATTGACTA ACCCAACTAGTCTAAGAATGTGTGACCAATGATGATTCTGTCACTTTTTT CGATCGAATCGAGATACGCTTACAATCATTATCTTCATTCTCTTCTTCCT TTTTATTATTCCAGGGAAATCGATTCGAGGTCGATTTACATATGGATATC GCTTCCGAGACACATTTAGATCTGGTCTGTAAATCTATCAATGAAATCAA AACAGAATATATTAAGAAAGAAAACAAGGTGATAGCGAAACATGACAATA AAATTAAACTGGTGCAAGATTATATCTGTAAGCAGAATGTTGTTATCAAA GATCTTCACGAAACAAACCGTACGTTGGAAACGAACTCAAGAAATATGCA AAACCAAATCAAAGACTTGGCGTCCAAAACGGAGATGTTTATGGAGGAAA TTACTCGCTTGAAAGTACAGGCCAATCAACTTCAAGAAGAAATGAATGAA TCACGTGACACTAATTTCACTGGATCTCTTTTATGGAAGATTAAGAACTT TTCGAAACACATGCAAAACGCAGTTAATAAAACGGAACTTTCAGTATACA GCCCACCTTTCTTTACCAGTCGATACGGGTACAAAGTAAGGGCGCAACTT TTCGTAAACGGACTTGGCTCGCAAACAGGAGAGTACATGGCTATATATTT CCATATTCTCCCTTCAGAACATGATGATATATTAAGATGGCCTTTCAATC ACAAAATCACTTTTTCTCTTCTCGAACAAACGCCAGACCAGACGAACGTG ACGTATACTTTAGTGCCGACGCCGAACGAGGACAGTTATAAACGGCCTTC GGATAAAATGAGCGACGGAAAAGGTTTCAATCGATTCATTTCGTTGGACG CCCTGAAAAAAGGGAAGTACATTAAAAATGATTCGATATTTGTCAAAATT CGAGTTCATTGTAAAAATACGAGCAGGAATCACGAATCTTAGTTTTTTAT CTAAATTATCTTAACTTATCTTTTGTAAAATAGATTTTCAATCAATCGCT TTTTGAAGCCCGTCTCTAGTCGAATAAGCCATAGTTCAGGCGAAATATAT GAAGTCACTGAATAATTTCATGTTTTGAGAATTTCTTGGTTTCCTTCGGG AAAAATGATGACGACAACTTGAAAGATTGTTTTAGCCAGATCGATTTGTC TTTTTTTGACTTTCTGTAGAATATCATCTTAAAATAGATCTATATTAATA TTATATTATAAGACTGTAAATTTACAATATAATATTTCTACGTTAAAGAA TTATTCGATGCATTTGAACATCATCTTGAAAATTAAGAAGCACAATTGAT CAATAGAAATCAAACTTCCGAAATCGCCTTGGAGAAAATACATGGAGTTA TCTTCGATATTCCAAGGAATGATCGAACTTCAGGGTTTAAGAAAACTATC ACCATCCCCATATATTCACAATGCATAATCCATGATAATGCGCCAAGAAC AAAGAAAATGTCTTACTCAAGATTGCAAATAAAATTCAATAGTGAACTTC ATTCCCGAGGATATTTGGACTTGTATGACAAATCCGTTTGCTCACACTAG CCAAATTTATCATCCAAAATATGTTTTCATGATCGATCTTTTGCTTTGCG TCTATTAGTCGTTGGGTAAAATCGATGAGTCGTCGTAACGACATCAGCTT TGTCGTACTTTCTGGCAGGTGGCAAAAATTCTTTCATGTTATCTTGAGGA TATTTCTCCTTGATCTTTTGCCGTGTTCCGTACAGCTTCATATCATGACG TAATTTAAAGTAATCCATGACGTCATAAGCAATAAGGACAGTCAGTGCAA GAATGACCAGAAGATCTTGAACGTCCATCCTCAAAATGTTCTTTCAGTGG AACTGCTCCAAACCATCAATCATTTTCTCCCTTTTTCCTTCAAATCGGTT TTGATATCTTAATATTAAAAGTGATTTGATAAATAAAACCTTAATGTTAA TCCTGGCCCACTAACCCCTGTTATTCCATTTAACCTAAACTGTGAAAACG TTCAGCAAACTGTATAATCAAGATAGGAACTGTAAAAATAAAACTGAACG AATTGATCACTTTCTTTCTTCGACCAAAAGTAAAACTTCAGCCATCGCCA ATGTTTCCCAAAATTGTTTACCATTTTGATTTAAAGTTCCAGACTCATTT CTTCAAGAAATTGAAAACTTGAACTTCAAGAAATCTGATCAGAAAAGATC ATCCCAAAAGTTTCTATATCATCTCATAAAAGAAATTTTGAATTCTCGTC TTATTTTGATGAAGTGAAGTGAGACAAGAAAAAAGAGAAAAGGAAGCATG AAAAAACTGAGGTTTTGAAGAAAGGAAGACAAAAACACCTGCACCACTAA CTAGACTAGAAGTAGTTATCACTTTCATCTCTTTTATTTTAAAGTTTATC ATATTTCAACATTTTTTACCAGTCTGAACTTCCACTTCCAAAACTGTTTA CTTGTCCTAGCAGTATGAACTTAAAAACTGTAATAAATCGATTGATAATT GATGAAAAGAATTCCTACTTATCAATAAATTCCATTTGATTCGATGATGA ATTTACTTTAAATGGGCCCCACAGTTTGGGTGACAAAATGAAAGTTACGT CCCAGTACACCAATTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006608XLOC_006608Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011763-exon-sc0000132-1575043694:225704..225871TCONS_00011763-exon-sc0000132-1575043694:225704..225871Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1575043694:225514..225588TCONS_00011763-exon-sc0000132-1575043694:225514..225588Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1575043694:224136..224216TCONS_00011763-exon-sc0000132-1575043694:224136..224216Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1575043694:221453..223957TCONS_00011763-exon-sc0000132-1575043694:221453..223957Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1510915933:225704..225871TCONS_00011763-exon-sc0000132-1510915933:225704..225871Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1510915933:225514..225588TCONS_00011763-exon-sc0000132-1510915933:225514..225588Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1510915933:224136..224216TCONS_00011763-exon-sc0000132-1510915933:224136..224216Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1510915933:221453..223957TCONS_00011763-exon-sc0000132-1510915933:221453..223957Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1491911889:225704..225871TCONS_00011763-exon-sc0000132-1491911889:225704..225871Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1491911889:225514..225588TCONS_00011763-exon-sc0000132-1491911889:225514..225588Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1491911889:224136..224216TCONS_00011763-exon-sc0000132-1491911889:224136..224216Clytia hemisphaericaexon
TCONS_00011763-exon-sc0000132-1491911889:221453..223957TCONS_00011763-exon-sc0000132-1491911889:221453..223957Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:221453..225871 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (16.9214 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.0493781 0 0 1.55386 0.504482 1.36999 1.5877 0.545621 0.214047 2.81573 1.32469 1.2136 1.76559 0.457673 0.921712 8.05165 7.23665 0.693439 2.40051 1.02117 1.09295 0.208444 0 8.73599 11.4941 16.9214 14.236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200240026002800Expect = 2.70e-33 / Id = 25.81SequenceTRAF3
Match NameE-valueIdentityDescription
TRAF32.702e-3325.81TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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