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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011763 ID=TCONS_00011763|Name=TCONS_00011763|organism=Clytia hemisphaerica|type=transcript|length=2829bp
aaagaattaaaaaacaaaacggGTATGATTCGTTTACGAATGCAGAAATA
CATGGAGAGAATAAGCGGTGATGAAAGTGCTGGTAGTGCTGGTGGTGGTG
GTGCTGGTGGTGGTGGCAAATATTACGCCAGTGAAACAATCACCGAAGAA
AGTGAAAACGATATCGACGATCACGATTGCACGATGGAATCACGTCCAGG
ACCTGAGGGTGAATCTTCAAGAACAATGCCCACTTCTTCAGAGGAACCAG
CATCGCCAAGTATTTCAGGAGATGGCGCttctttgaaattctgtaaattt
atcaagcTGGGTTGTAAGTTCAAGGGAAATCGATTCGAGGTCGATTTACA
TATGGATATCGCTTCCGAGACACATTTAGATCTGGTCTGTAAATCTATCA
ATGAAATCAAAACAGAATATATTAAGAAAGAAAACAAGGTGATAGCGAAA
CATGACAATAAAATTAAACTGGTGCAAGATTATATCTGTAAGCAGAATGT
TGTTATCAAAGATCTTCACGAAACAAACCGTACGTTGGAAACGAACTCAA
GAAATATGCAAAACCAAATCAAAGACTTGGCGTCCAAAACGGAGATGTTT
ATGGAGGAAATTACTCGCTTGAAAGTACAGGCCAATCAACTTCAAGAAGA
AATGAATGAATCACGTGACACTAATTTCACTGGATCTCTTTTATGGAAGA
TTAAGAACTTTTCGAAACACATGCAAAACGCAGTTAATAAAACGGAACTT
TCAGTATACAGCCCACCTTTCTTTACCAGTCGATACGGGTACAAAGTAAG
GGCGCAACTTTTCGTAAACGGACTTGGCTCGCAAACAGGAGAGTACATGG
CTATATATTTCCATATTCTCCCTTCAGAACATGATGATATATTAAGATGG
CCTTTCAATCACAAAATCACTTTTTCTCTTCTCGAACAAACGCCAGACCA
GACGAACGTGACGTATACTTTAGTGCCGACGCCGAACGAGGACAGTTATA
AACGGCCTTCGGATAAAATGAGCGACGGAAAAGGTTTCAATCGATTCATT
TCGTTGGACGCCCTGAAAAAAGGGAAGTACATTAAAAATGATTCGATATT
TGTCAAAATTCGAGTTCATTGTAAAAATACGAGCAGGAATCACGAATCTT
AGTTTTTTATCTAAATTATCTTAACTTATCTTTTGTAAAATAGATTTTCA
ATCAATCGCTTTTTGAAGCCCGTCTCTAGTCGAATAAGCCATAGTTCAGG
CGAAATATATGAAGTCACTGAATAATTTCATGTTTTGAGAATTTCTTGGT
TTCCTTCGGGAAAAATGATGACGACAacttgaaagattgttttagCCAGA
TCGATTtgtctttttttgactttctgtAGAATATCATCTTAAAATAGATC
TATattaatattatattataaGACTGTAAATTTACAATATAATATTTCTA
CGTTAAAGAATTATTCGATGCATTTGAACATCATCTTGAAAATTAAGAAG
CACAATTGATCAATAGAAATCAAACTTCCGAAATCGCCTTGGAGAAAATA
CATGGAGTTATCTTCGATATTCCAAGGAATGATCGAACTTCAGGGTTTAA
GAAAACTATCACCATCCCCATATATTCACAATGCATAATCCATGATAATG
CGCcaagaacaaagaaaatgtcttACTCAAGATTGCAAATAAAATTCAAT
AGTGAACTTCATTCCCGAGGATATTTGGACTTGTATGACAAATCCGTTTG
CTCACACTAGCCAAATTTATCATccaaaatatgttttcatgaTCGATCTT
TTGCTTTGCGTCTATTAGTCGTTGGGTAAAATCGATGAGTCGTCGTAACG
ACATCAGCTTTGTCGTACTTTCTGGCAGGTGGCAAAAATTCTTTCATGTT
ATCTTGAGGATATTTCTCCTTGATCTTTTGCCGTGTTCCGTACAGCTTCA
TATCATGACGTAATTTAAAGTAATCCATGACGTCATAAGCAATAAGGACA
GTCAGTGCAAGAATGACCAGAAGATCTTGAACGTCCatcctcaaaatgtt
ctttcaGTGGAACTGCTCCAAACCATCAATCATTTTCTCCCTTTTTCCTT
CAAATCGGTTTTGATATCTTAATATTAAAAGTGATTTGATAAATAAAACC
TTAATGTTAATCCTGGCCCACTAACCCCTGTTATTCCATTTAACCTAAAC
TGTGAAAACGTTCAGCAAACTGTATAATCAAGATAGGaactgtaaaaata
aaactgaacGAATTGATCACTTTCTTTCTTCGACCAAAAGTAAAACTTCA
GCCATCGCCAATGTTTCCCAAAATTGTTTACCATTTTGATTTAAAGTTCC
AGACTCATTtcttcaagaaattgaaaacttgaaCTTCAAGAAATCTGATC
AGAAAAGATCATCCCAAAAGTTTCTATATCATCTcataaaagaaattttg
aattctCGTCTTATTTTGATGAAGTGAAGTGAGacaagaaaaaagagaaa
aggaaGCATGAAAAAACTGAGGTTTTGAAGAAAGGAAGACAAAAACACCT
GCACCACTAACTAGACTAGAAGTAGTTATCACTTTCatctcttttatttt
aaagtttatcatatttcaacattttttaccAGTCTGAACTTCCACTTCCA
AAACTGTTTACTTGTCCTAGCAGTATGAACTTAAAAACTGTAATAAATCG
ATTGATAATTGATGAAAAGAATTCCTACTTATCAATAAATTCCATTTGAT
TCGATGATGAATTTACTTTAAATGGGCCCCACAGTTTGGGTGACAAAATG
AAAGTTACGTCCCAGTACACCAATTGAAA Run BLAST on NCBI transcript from alignment at sc0000132:221453..225871- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011763 ID=TCONS_00011763|Name=TCONS_00011763|organism=Clytia hemisphaerica|type=transcript|length=4419bp|location=Sequence derived from alignment at sc0000132:221453..225871- (Clytia hemisphaerica)
AAAGAATTAAAAAACAAAACGGGTATGATTCGTTTACGAATGCAGAAATA
CATGGAGAGAATAAGCGGTGATGAAAGTGCTGGTAGTGCTGGTGGTGGTG
GTGCTGGTGGTGGTGGCAAATATTACGCCAGTGAAACAATCACCGAAGAA
AGTGAAAACGATATCGACGTAAGTTCATGGTGTAAAGAAAGAAAGGAACT
TGAACTCTTTTTTTACTTACTGGGGTCATTGAGGCTCAACCGGATTGTAA
TTTTACTAATTCTCATTTAATTTCTACTTGCAGGATCACGATTGCACGAT
GGAATCACGTCCAGGACCTGAGGGTGAATCTTCAAGAACAATGCCCACTT
CTTCAGAGGTAAGGGATGAAACTTGTGACGGATACCAAGGGATGATGTTT
CCAAATAGGGTTGCAAATGGCCCCACACTTCGAATGGTCTTTATAAGGAT
TACACTTCATCTTAACTCAATGAACAAATGAAACTTTTGAGGATGATGAG
GTTCATTGACCACAAGGGGCGTTCTTTAACGTGCTTTATGAGATTTTTAT
GACCAACAAATGATTATAAATTTGAATTTTTTTCTCATGATTTCCCATGG
TATGGCTAAACTATGAATGGGTTTAGAAGTATTGAGCCCTTCAACGTTAT
GATTACATGACATGGGCCTGTTCTGTACGATTTCTCTGTTGATAAATTTT
TGTAAAAGAAGGTGGTTCAATTCCTTTTTTGAAGTAAAATGTTTCTTAGG
ATTTGTCCGTACAATATCTTGTTTCAGTTTTGAAGTTTGAAACTGAGATT
AGGCCAAAGGGGAAAGATTCTTTCCTCTAGGGAAACATAATCTTTGGGAA
ATATTTGAATTCTAAAGAAAGTTTATTTCTCTTTTTTTCGTGAGCAGTGA
AAAATATCATTTTTCGTTATGAAGGATGTCAAAGTTTAAATCCCTTTTCT
TCATCCATCCATCATCAATTCTCTTTTCCATTCTCATAATCGGTTGAGAT
ACAACACAGATGTTTTGTGTCTTTCTTTTTCCTGTTCCTCAACTGATAGT
ATACTGAGTATATCTTGTTCGAGCAAAATATAATGTTCAAGAAACTTTTT
TTCGGGATTTGCTTCAGGGTTGAAACATTTTTTAACGTTTTTTTTTAAAT
TGCTCGATTAACTAAAGGAAACAAGATGCAAAATAACGAACAAAAAGTAA
AATCAACTTTGATATTTTCTGGTGTGAAATCATTATTTGACTGACTCTTG
CTTTATTAAGTTATTGTACATATTAAAATCCCACTTCAATACAACAAAAT
TTGTACTTTTAAAGTAAAAAAGCCTTGTAAGATTAAGAAAACAAACATTT
TCGAAGATCGTATTCTTGATCCCATGTTGAGATAACTTCGTTTGTTTGGA
TTTTCGTTTACAAAAAATCATTAAAATATCAGAAAAAAAGTTAGAATCTG
AAGAAATTGCTTTTAACCTACTAAAATAAAAAAGACTTACCTACGCACTT
AAACGCCCCTTCATTCAAAATCAGTTTTTTATCTGTTAATTTTGTTGACA
ATTGTTGAGATTCTGTCGCAATTTTAAGCTATAGAATTATTATTCACGTA
CCATCTTCCTCCTGTGCAAGAAATTCATTACAATTCTTTTCCTTACCGTC
AATAGGAACCAGCATCGCCAAGTATTTCAGGAGATGGCGCTTCTTTGAAA
TTCTGTAAATTTATCAAGCTGGGTTGTAAGTTCAAGGTAAGAAAACAACA
GAAATTTCACTTTACAAATACTCGAGTCATGGTGAAAAAAATATTGACTA
ACCCAACTAGTCTAAGAATGTGTGACCAATGATGATTCTGTCACTTTTTT
CGATCGAATCGAGATACGCTTACAATCATTATCTTCATTCTCTTCTTCCT
TTTTATTATTCCAGGGAAATCGATTCGAGGTCGATTTACATATGGATATC
GCTTCCGAGACACATTTAGATCTGGTCTGTAAATCTATCAATGAAATCAA
AACAGAATATATTAAGAAAGAAAACAAGGTGATAGCGAAACATGACAATA
AAATTAAACTGGTGCAAGATTATATCTGTAAGCAGAATGTTGTTATCAAA
GATCTTCACGAAACAAACCGTACGTTGGAAACGAACTCAAGAAATATGCA
AAACCAAATCAAAGACTTGGCGTCCAAAACGGAGATGTTTATGGAGGAAA
TTACTCGCTTGAAAGTACAGGCCAATCAACTTCAAGAAGAAATGAATGAA
TCACGTGACACTAATTTCACTGGATCTCTTTTATGGAAGATTAAGAACTT
TTCGAAACACATGCAAAACGCAGTTAATAAAACGGAACTTTCAGTATACA
GCCCACCTTTCTTTACCAGTCGATACGGGTACAAAGTAAGGGCGCAACTT
TTCGTAAACGGACTTGGCTCGCAAACAGGAGAGTACATGGCTATATATTT
CCATATTCTCCCTTCAGAACATGATGATATATTAAGATGGCCTTTCAATC
ACAAAATCACTTTTTCTCTTCTCGAACAAACGCCAGACCAGACGAACGTG
ACGTATACTTTAGTGCCGACGCCGAACGAGGACAGTTATAAACGGCCTTC
GGATAAAATGAGCGACGGAAAAGGTTTCAATCGATTCATTTCGTTGGACG
CCCTGAAAAAAGGGAAGTACATTAAAAATGATTCGATATTTGTCAAAATT
CGAGTTCATTGTAAAAATACGAGCAGGAATCACGAATCTTAGTTTTTTAT
CTAAATTATCTTAACTTATCTTTTGTAAAATAGATTTTCAATCAATCGCT
TTTTGAAGCCCGTCTCTAGTCGAATAAGCCATAGTTCAGGCGAAATATAT
GAAGTCACTGAATAATTTCATGTTTTGAGAATTTCTTGGTTTCCTTCGGG
AAAAATGATGACGACAACTTGAAAGATTGTTTTAGCCAGATCGATTTGTC
TTTTTTTGACTTTCTGTAGAATATCATCTTAAAATAGATCTATATTAATA
TTATATTATAAGACTGTAAATTTACAATATAATATTTCTACGTTAAAGAA
TTATTCGATGCATTTGAACATCATCTTGAAAATTAAGAAGCACAATTGAT
CAATAGAAATCAAACTTCCGAAATCGCCTTGGAGAAAATACATGGAGTTA
TCTTCGATATTCCAAGGAATGATCGAACTTCAGGGTTTAAGAAAACTATC
ACCATCCCCATATATTCACAATGCATAATCCATGATAATGCGCCAAGAAC
AAAGAAAATGTCTTACTCAAGATTGCAAATAAAATTCAATAGTGAACTTC
ATTCCCGAGGATATTTGGACTTGTATGACAAATCCGTTTGCTCACACTAG
CCAAATTTATCATCCAAAATATGTTTTCATGATCGATCTTTTGCTTTGCG
TCTATTAGTCGTTGGGTAAAATCGATGAGTCGTCGTAACGACATCAGCTT
TGTCGTACTTTCTGGCAGGTGGCAAAAATTCTTTCATGTTATCTTGAGGA
TATTTCTCCTTGATCTTTTGCCGTGTTCCGTACAGCTTCATATCATGACG
TAATTTAAAGTAATCCATGACGTCATAAGCAATAAGGACAGTCAGTGCAA
GAATGACCAGAAGATCTTGAACGTCCATCCTCAAAATGTTCTTTCAGTGG
AACTGCTCCAAACCATCAATCATTTTCTCCCTTTTTCCTTCAAATCGGTT
TTGATATCTTAATATTAAAAGTGATTTGATAAATAAAACCTTAATGTTAA
TCCTGGCCCACTAACCCCTGTTATTCCATTTAACCTAAACTGTGAAAACG
TTCAGCAAACTGTATAATCAAGATAGGAACTGTAAAAATAAAACTGAACG
AATTGATCACTTTCTTTCTTCGACCAAAAGTAAAACTTCAGCCATCGCCA
ATGTTTCCCAAAATTGTTTACCATTTTGATTTAAAGTTCCAGACTCATTT
CTTCAAGAAATTGAAAACTTGAACTTCAAGAAATCTGATCAGAAAAGATC
ATCCCAAAAGTTTCTATATCATCTCATAAAAGAAATTTTGAATTCTCGTC
TTATTTTGATGAAGTGAAGTGAGACAAGAAAAAAGAGAAAAGGAAGCATG
AAAAAACTGAGGTTTTGAAGAAAGGAAGACAAAAACACCTGCACCACTAA
CTAGACTAGAAGTAGTTATCACTTTCATCTCTTTTATTTTAAAGTTTATC
ATATTTCAACATTTTTTACCAGTCTGAACTTCCACTTCCAAAACTGTTTA
CTTGTCCTAGCAGTATGAACTTAAAAACTGTAATAAATCGATTGATAATT
GATGAAAAGAATTCCTACTTATCAATAAATTCCATTTGATTCGATGATGA
ATTTACTTTAAATGGGCCCCACAGTTTGGGTGACAAAATGAAAGTTACGT
CCCAGTACACCAATTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011763-exon-sc0000132-1575043694:225704..225871 | TCONS_00011763-exon-sc0000132-1575043694:225704..225871 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1575043694:225514..225588 | TCONS_00011763-exon-sc0000132-1575043694:225514..225588 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1575043694:224136..224216 | TCONS_00011763-exon-sc0000132-1575043694:224136..224216 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1575043694:221453..223957 | TCONS_00011763-exon-sc0000132-1575043694:221453..223957 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1510915933:225704..225871 | TCONS_00011763-exon-sc0000132-1510915933:225704..225871 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1510915933:225514..225588 | TCONS_00011763-exon-sc0000132-1510915933:225514..225588 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1510915933:224136..224216 | TCONS_00011763-exon-sc0000132-1510915933:224136..224216 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1510915933:221453..223957 | TCONS_00011763-exon-sc0000132-1510915933:221453..223957 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1491911889:225704..225871 | TCONS_00011763-exon-sc0000132-1491911889:225704..225871 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1491911889:225514..225588 | TCONS_00011763-exon-sc0000132-1491911889:225514..225588 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1491911889:224136..224216 | TCONS_00011763-exon-sc0000132-1491911889:224136..224216 | Clytia hemisphaerica | exon |
| TCONS_00011763-exon-sc0000132-1491911889:221453..223957 | TCONS_00011763-exon-sc0000132-1491911889:221453..223957 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:221453..225871 - |
Blast
BLAST of TCONS_00011763 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 2.702e-33 Identity = 96/372 (25.81%), Postives = 171/372 (45.97%), Query Frame = 1
Query: 166 DDHDCTMESRPGPEGESSRTMPTSSEEPASPSISGDGASLKFCKFIKLGCKFKGNRFEVDLHMDIASETHLDLVCKSINEIKTEYIKKENKVIAKHDNKIKLVQDYICKQNVVIKDLHETNRTLETNSRNMQNQIKDLASKTEMF----------MEEITRLKVQANQLQEEMNE-----------SRDT----------------------------------NFTGSLLWKIKNFSKHMQNAVNKTELSVYSPPFFTSRYGYKVRAQLFVNGLGSQTGEYMAIYFHILPSEHDDILRWPFNHKITFSLLEQTPDQTNVTYTLVPTPNEDSYKRPSDKMSDGKGFNRFISLDALKKGKYIKNDSIFVKIRV 1116
+D DC P S +T+ SE A S + S C F + GC F+G ++ H ++ H++L+ + N ++ + +N+ + K + I+ + + IC + I+ E R E+ ++Q I A K + EE +K LQ + E +R+T ++ G L+WKI+++ + Q AV LS+YS PF+T +GYK+ A++++NG G G +++++F I+ E+D +L WPF K+T L++Q + ++ P PN S+K+P+ +M+ G F++ L+ G YIK+D+IF+K+ V
Sbjct: 193 EDTDCPCVVVSCPHKCSVQTL-LRSELSAHLSECVNAPST--CSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEK-NKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560
The following BLAST results are available for this feature:
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