|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011753 ID=TCONS_00011753|Name=TCONS_00011753|organism=Clytia hemisphaerica|type=transcript|length=1720bpRun BLAST on NCBI transcript from alignment at sc0000132:67725..84159- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011753 ID=TCONS_00011753|Name=TCONS_00011753|organism=Clytia hemisphaerica|type=transcript|length=16435bp|location=Sequence derived from alignment at sc0000132:67725..84159- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011753 vs. Swiss-Prot (Human)
Match: KAT2A (Histone acetyltransferase KAT2A OS=Homo sapiens GN=KAT2A PE=1 SV=3) HSP 1 Score: 468.003 bits (1203), Expect = 1.520e-154 Identity = 245/492 (49.80%), Postives = 318/492 (64.63%), Query Frame = 1
Query: 157 QRIQQKKTQVKSMPRLKKLEKLAVYSSCKYKGNNTQCACNGWKNPNPQRSSEQNTPAPTTLQIDLITKCRACQHPVNDHVSHLDNENEEEINYLLSMVVDVENLFMCVHKETDNDNKQVYFYLFKLLRKSILQMSKPTVEGPLGKPPFEMPSIEKGVKNFVQQKFG-LDSQHAQIMHELARIFVRCLNHWKLETPSARKQRLPNDDISTYKVNYTRWLCYCHVPLFCDSMQKCEVTNIFGQSFLKSVFSLMKQQLLDKFSAEKDKLPPDTRKKVLSHFPGFLQQFEEEIMLNDSLIWSDLPFTPXXXXXXXXXXXXXXXXXXXXXXXP---PSQEQTDDLTVETQAAIQHIEEGEVVEEADIKPDINELKRSLTISFT-EQAESEEVQPVSKKICLSPTGDVETTILAKIIDTITDPTKMLGPQGGIYPSQTARDETARSEERRGVIEFHVIGNTLSRKPSRQTTIWLIGLQNVFSYQLPRMPKEYITRLVF 1617
QR Q+K QV+ +PR KKLEKL V+S+CK N C CNGWKNP P + + P +L CR+C+HP+ DHVSHL+N +E+EIN LL MVVDVENLFM VHKE D D KQVYFYLFKLLRK ILQM++P VEG LG PPFE P+IE+GV NFVQ KF L + Q M EL+++F+ CLN+WKLETP+ +QR +D++TYKVNYTRWLCYCHVP CDS+ + E T++FG+S L+S+F++ ++QLL+KF EKDKL P+ R +L+HFP FL EEEI +S IW FT + + +S +P PS + ++ +A GE KR+L + T E A+ V GD+ ++ +++ TITDP MLGP+ + + ARDETAR EERRG+IEFHVIGN+L+ K +R+ +WL+GLQNVFS+QLPRMPKEYI RLVF
Sbjct: 85 QRASQRKAQVRGLPRAKKLEKLGVFSACK---ANETCKCNGWKNPKPPTAPRMDLQQPAA---NLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPRERQTMFELSKMFLLCLNYWKLETPAQFRQRSQAEDVATYKVNYTRWLCYCHVPQSCDSLPRYETTHVFGRSLLRSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGANSPIWES-GFTMPPSEGTQLVPRPASVSAAVVPSTPIFSPSMGGGSNSSLSLDSAGAEPMPGE--------------KRTLPENLTLEDAKRLRVM-----------GDIPMELVNEVMLTITDPAAMLGPETSLLSANAARDETARLEERRGIIEFHVIGNSLTPKANRRVLLWLVGLQNVFSHQLPRMPKEYIARLVF 544 The following BLAST results are available for this feature:
BLAST of TCONS_00011753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.