|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011743 ID=TCONS_00011743|Name=TCONS_00011743|organism=Clytia hemisphaerica|type=transcript|length=2009bpRun BLAST on NCBI transcript from alignment at sc0000132:506659..520189+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011743 ID=TCONS_00011743|Name=TCONS_00011743|organism=Clytia hemisphaerica|type=transcript|length=13531bp|location=Sequence derived from alignment at sc0000132:506659..520189+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011743 vs. Swiss-Prot (Human)
Match: GRN (Granulins OS=Homo sapiens GN=GRN PE=1 SV=2) HSP 1 Score: 276.944 bits (707), Expect = 3.956e-83 Identity = 198/584 (33.90%), Postives = 272/584 (46.58%), Query Frame = 1
Query: 169 CPYKNGQCCEDLSTCCPSGYKCDPK-RSGYCISADEYIRFPXXXXXXXXXDKALFTCPDGCTQCASGSTCCVQSSGRYGCCPLPDATCCSDYVHCCPYGYTCNAQNYCTRSANQITQKLVGTTP-AKQAPVIEVDIVSFNLGDIYCGDERT-CPEGSTCCATPDGEYNCCSFPGASCCNDGIHCCPQGFTCDSEKQEC-RRNSERVAMQHKFPAKKSLPPANIKEECKKQPIDEKPKVVECGTDKQYFCLDGETCCLISPGVYGCCPMVEAVCCSDKKHCCPHGATCDVAHGTCLSSSGEKVQMRAHKPANVHKEYPEPKTNQKCPDGLCNNATVKATESKPMTLYKPMYKECKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRC-DDGHCHHGDIRIPATKKF----QSIQSNQDVSCNDGNVCSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVCSEGGCVKAN---KQIEAYQLTTKL-----VSLESVRCPDHVSECPDGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYTCGSGGY--CTKGSEVIKASIKNAAINNL 1863
CP+ C D CCP G+ C RS + S + + CPD +C STCCV G +GCCP+P A+CC D VHCCP+G C+ + TR GT P AK+ P + + C D R+ CP+GSTCC P G+Y CC P A+CC+D +HCCPQ CD + +C + + + K PA V + D + C DG TCC + G +GCCP +AVCC D HCCP G TCD GTC + M + A H P+P+ ++ D C+N S CPS TCC+L +G++GCCPIP+A CC D HCCP C +G C G + +K S+ +D+ C+ C TCC S GS ACC P+AVCC + +HCCP+G+ C+ VKA K++ + Q T L V ++ V C + C D TCC+ + W CCP + CC+D HCCP G+ C + G + + A +++ A+ L
Sbjct: 84 CPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNSV--------------GAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVH--TRCITP-----TGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAH---------------------TVGDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWM---EKAPAHLSLPDPQALKR--DVPCDNV-----------------------SSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCN----VKARSCEKEVVSAQPATFLARSPHVGVKDVECGEG-HFCHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALRQL 592 HSP 2 Score: 272.707 bits (696), Expect = 1.636e-81 Identity = 178/494 (36.03%), Postives = 251/494 (50.81%), Query Frame = 1
Query: 571 VSFNLGDIYCGDERTCPEGSTCCATPDGEYNCCSFPGASCCNDGIHCCPQGFTCDSEKQECRRNSERVAMQHKFPAKKSLPPANIKEECKKQPIDEKPKVVECGTDKQYFCLDGETCCLISPGVYGCCPMVEAVCCSDKKHCCPHGATCDVAHGTCLSSSGEKVQMRAHKPANVHKEYPEPKTNQKCPDGLCNNATVKATESKPMTLYKPMYKECKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRCDDGHCHHGDIRIPATKKFQSIQSNQ--DVSCNDGNVCSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVC--SEGGCVKANKQIEAYQLTTKLVSL-------ESVRCPDHVSECPDGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYTCGSGGYCTKGSEVI----KASIKNAAINNLKSVACPDGTSQCPDGSTCCKLSSGQYGCCPLPKATCCSDGVHCCPNGY 2007
+S +LG C + C G +C T G +CC FP A C DG HCCP+GF C ++ + C + S ++ ++C D Q+ C D TCC++ G +GCCPM +A CC D+ HCCPHGA CD+ H C++ +G + K+ P +TN+ + +++V +++ S CP STCC+L +GKYGCCP+P+ATCC D +HCCP CD T + ++ DV C+ C + TCC + G+ CCP AVCC + HCCP+G C +G C + Q+ + +SL V C D+VS CP +TCC+L+SG+WGCCP+P+A CCSD HCCP GYTC + G C +GSE++ K + A++++ + + C TS CP G TCC G + CC LP A CC D HCCP GY
Sbjct: 53 LSRHLGGP-CQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNSV----------------------------GAIQC-PDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTH---------PLAKKLPAQRTNR----AVALSSSVMCPDAR---------------SRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTS-CPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGY 486 HSP 3 Score: 271.166 bits (692), Expect = 6.008e-81 Identity = 194/575 (33.74%), Postives = 254/575 (44.17%), Query Frame = 1
Query: 349 TQCASGSTCCVQSSGRYGCCPLPDATCCSDYVHCCPYGYTCNAQNYC--TRSANQITQKLVGTTPAKQAPVIEVDIVSFNLGDIYCGDER-TCPEGSTCCATPDGEYNCCSFPGASCCNDGIHCCPQGFTCDSEKQECRRNSERVAMQHKFPAKKSLPPANIKEECKKQPIDEKPKVVECGTDKQYFCLDGETCCLISPGVYGCCPMVEAVCCSDKKHCCPHGATCDVAHGTCLSSSGEKVQMRAHKPANVHKEYPEPKTNQKCPDGLCNNATVKATESKPMTLYKPMYKECKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRCD--DGHCHHGDIRIPATKKFQSIQS-------NQDVSCNDGNVCSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVC-SEGGCVKANKQIEAYQ-LTTKLVSLESVR---CPDHVSECPDGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYTCGSGGY-CTKGSEVIKAS----IKNAAINNLKSVACPDGTSQCPDGSTCCKLSSGQYGCCPLPKATCCSDGVHCCPNGY 2007
C++G +C SG CCP P+A C D HCCP G+ C+A RS N ++G I C D + CP+ STCC DG + CC P ASCC D +HCCP G CD C + + K PA+++ + V C D + C DG TCC + G YGCCPM A CCSD HCCP CD+ CLS + PA+ + +C CP TCC+L +G +GCCP A CC D +HCCP CD G C G ++P +K + S +DV C++ + C + TCC G CCP P AVCCS+ +HCCP G+ C +EG C + ++ + + + + SL R C H S CP G TCC G W CC LP A CC D HCCP GYTC C K EV+ A + + +K V C +G C D TCC+ + + CCP + CC+D HCCP G+
Sbjct: 65 AHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNN------------------------SVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSS------------VMC-PDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDV-----------------------------------KCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTS-CPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEK--EVVSAQPATFLARSPHVGVKDVECGEGHF-CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGF 563 HSP 4 Score: 205.297 bits (521), Expect = 5.857e-57 Identity = 158/502 (31.47%), Postives = 210/502 (41.83%), Query Frame = 1
Query: 157 TNLECPYKNGQCCEDLSTCCPSGYKCDPKRSGYCISADEYIRFPXXXXXXXXXDKALFTCPDGCTQCASGSTCCVQSSGRYGCCPLPDATCCSDYVHCCPYGYTCNAQNYCTRSANQITQKLVGTTPAKQAPVIEVDIVSFNLGDIYCGDERTCPEGSTCCATPDGEYNCCSFPGASCCNDGIHCCPQGFTCDSEKQECRRNSERVAMQHKFPAKKSLP-PANIKEECKKQPIDEKPKVVECGTDKQYFCLDGETCCLISPGVYGCCPMVEAVCCSDKKHCCPHGATCDVAHGTCLSSSGEKVQMRAHKPANVHKEYPEPKTNQKCPDGLCNNATVKATESKPMTLYKPMYKECKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRCD--DGHCHHGDIRI-PATKKFQSIQSN-QDVSCNDGNVCSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVCSEGGCVKANKQIEAYQLTTKLVSLESV 1647
TN + C D + CP G STCC SG+YGCCP+P+ATCCSD++HCCP C+ S T L+ PA +GD+ C E +CP+G TCC G + CC F A CC D IHCCP GFTCD++K C + +V K PA SLP P +K + V C D C +TCC ++ G +GCCP+ EAVCCSD +HCCP G TC VA G C S E V A ++ ++ +L P C + CP TCC G + CC +P A CC D HCCP C+ C + PAT +S +DV C +G+ C +N TCC ACCP VCC++ +HCCP+G C+ G ++ + + +L +
Sbjct: 196 TNRAVALSSSVMCPDARSRCPDG-----------------------------------------------STCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAH------------TVGDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRD------------VPC--DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTC-VAEGQCQRGS-EIV------------------------------AGLEKMPARRASLSHPRDIGCDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHVGVKDVECGEGHFCHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALRQL 592 HSP 5 Score: 171.014 bits (432), Expect = 2.094e-45 Identity = 110/292 (37.67%), Postives = 142/292 (48.63%), Query Frame = 1
Query: 1171 ESKPMTLYKPMYKECKDGSECPSYSTCCKLNNGKYGCCPIPDATCCRDGVHCCPNHMRCD-DGHCHHGDIRIPATKKFQSIQSNQ--DVSCNDGNV-CSENSTCCHSEDGSSACCPAPNAVCCSNGKHCCPSGHVC--------SEGGCVKANKQIEAYQLTTKLVSLESVRCPDHVSECPDGNTCCKLSSGQWGCCPLPKATCCSDGVHCCPNGYTCGS-GGYCTKGSEVIKASIKNAAINNLKSVACPDGTSQCPDGSTCCKLSSGQYGCCPLPKATCCSDGVHCCPNGY 2007
+ P TL + + C+ + C + +C +G CCP P+A C DG HCCP C DG FQ +N + C D C + STCC DGS CCP P A CC + HCCP G C + G K++ A + + SV CPD S CPDG+TCC+L SG++GCCP+P ATCCSD +HCCP C C + + + V C D CPDG TCC+L SG +GCCP +A CC D +HCCP G+
Sbjct: 47 DKWPTTLSRHLGGPCQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGR-----------SCFQRSGNNSVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGF 326 The following BLAST results are available for this feature:
BLAST of TCONS_00011743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.