TCONS_00011733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011733
Unique NameTCONS_00011733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011733 ID=TCONS_00011733|Name=TCONS_00011733|organism=Clytia hemisphaerica|type=transcript|length=2304bp
taagACATCTATTGTTCGGATGAAAAGTTATAAATTCTTGATTGGACAGG
ATTTCAAAATCAGTTAGAAAAAAATTCGATTCGTGATACACGCATGTGCa
ttgatgaaaatatttgaagttTGAGTTGATATCATAGATTTCgtgtttga
caaaaaaaactaaatcaaaAATGACTCGAAGAAAGATGGGTGTAGCTGGT
TTATTAGATGAATTGGCTCGTGGTAACAACGTGGCCCAACTTGAGCAAAT
TTTAGTAGAAAATGAACATGTCAATAACAATGATAATGAATCCAAAAGCA
CCGCACTCCACACAGCCGCAACAAAAGGCTTTGCTGAAGTAGTAGCAGCT
TTGATCCGCGCTGGAGCGAATGTTCGTTTACAGAATTGGAAAGGCTTGAC
ACCGATCCACCTTGCAGCTCACCATGGTCGATTGAACGTTCTAAAACTTC
TTCTATCTTATGATCCTACTCTCTTAAACATGACGGACTTAACTGGAAAC
ACACTGATCAACATTGCAGCACACAAAGGACATGTTAGTGTCGTTGaata
tcttttgaaagaaactgaGATTGACTTCCGCTTGAAAAATAAGCACGGTA
ACACAAGTTTTCATTCGGCAACTCTTGGTAGACGtctcaaagttttgaaa
gtcttaCTCCACTATCATCCTGAAGCAATCAATGAAACGAACAAAGATGG
TAACACTCCCCTACATCTAGCATCAGAACGAGGCTATGCTACAATAATGC
AATTGTTGTTGTCACGTGGAGCACGCGGCACCAAGCGGAATAACAGAAAT
AAAACACCATTCCACTTGTCACCTTTGGAAGGGCAAAAGGTCTTTAGAAA
GTTCGAAAACTACAAAGACATCCTAACAAAATGTTCGAACGATTTGGCTC
CACTCCTCATCACCAAACGTTACGAGGACGATGACACAGCACTCCACATC
GCCGCTTTTTTCGagacaaaatttgacgtcattcGGCTGCTCGTCCAATC
AGGACACTCCGTTAATTGTTACAACTGTCACAATCAAACACCCCTGTTCG
TCGCCGTAGAAATGGAAAATACAATCAACGCTCGTACATTGGTGACTTTA
GGCGGCCGCGTAGATGACGTAGAATCCACACGCGGGCAAACACCACTTCA
TGTCGCCACGTTTAAAGACAATGTAGAGATGCTCAAAATCTTAACTCGCC
GTAACAGTTTAGACGTCAACGTAGTCGATCAGGATGGAAAAACGCCGTTA
GCTTACGCAATCATACGTAGCTCACGTGTGGCTGTACAACATTTACTGGA
ACGTGGTGCTGATACAGGGATGAAGGACTCCAAAGGCAACAATGCGTTGC
ATTTGTCTGTAATGACCAAAAACACTGAAATCACTGAAGACGTCCTATCC
GTCGGAAATCAGTCACTTATCAACGAAAAAACAATGGAGGGTAAATCTCC
ACTTTTATTAGCAGTAGACCGCCAAAGCAAAAGCTTTGATACCAACACTA
TTAAAATGATTGACATTTTATTGAACAAAGGTGCCGACCCACATCAGAAG
AGTAAGTCCGGATCAACAGCTTACGAGCTAGCCTGTACTCGTGGTATTGA
CTTGGACAACAGGCAAGACACGCCACGCGAGACAACCATATGAATAAAGA
CAgacaaaaatatgactttttaaTGATTAGCAAATATTACAATTAAAATG
AGAGCTGGCATCTCATATTGATTAATTAATTTTGAAAGCacctgtacacg
ttttttttttataagcaactaaATCTTTGGGGTCAGGGGTTGCTTAGCTT
TCTAGCTCGTTTTCTAGAAAATTTGCTTTGAACACCCTTGATATTATaca
taccatatttatgctcatcgggtcaagggctatcgtttagcatggttaga
ttatctaaaaagcagttgcttatttaaaaaaaatgtgcgTAGGGCGTTAA
AGGGTGTAAACTTTGGGAGGAGTGGGGTTGCAAGTagttaaattctttta
aaaaggaTTGACTGCTTCTCAAATCAAATTTCGGAAAAGGGATAAATTTG
ACATTTACTATTTACAAAAAGAGATGAAAAAGATTTATGTAATTATTTCA
GaggtattatttttattatattatagCAGAATATGTGTAATGTATTATAT
ATTGTAAAAAACACATGAAAAATTCTAACTTATGAGtgcaaagcaaaaga
aaaaaactgacAGTCAACAAAACATATTTCATTTATCATGGATAAGGTGA
TCCAACATTTGGAAAAACAGGAACAAAAAAACACCACATTCAGATGGGTG
AAAT
Run BLAST on NCBI

protein sequence of TCONS_00011733-protein

>TCONS_00011733-protein ID=TCONS_00011733-protein|Name=TCONS_00011733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp
MTRRKMGVAGLLDELARGNNVAQLEQILVENEHVNNNDNESKSTALHTAA
TKGFAEVVAALIRAGANVRLQNWKGLTPIHLAAHHGRLNVLKLLLSYDPT
LLNMTDLTGNTLINIAAHKGHVSVVEYLLKETEIDFRLKNKHGNTSFHSA
TLGRRLKVLKVLLHYHPEAINETNKDGNTPLHLASERGYATIMQLLLSRG
ARGTKRNNRNKTPFHLSPLEGQKVFRKFENYKDILTKCSNDLAPLLITKR
YEDDDTALHIAAFFETKFDVIRLLVQSGHSVNCYNCHNQTPLFVAVEMEN
TINARTLVTLGGRVDDVESTRGQTPLHVATFKDNVEMLKILTRRNSLDVN
VVDQDGKTPLAYAIIRSSRVAVQHLLERGADTGMKDSKGNNALHLSVMTK
NTEITEDVLSVGNQSLINEKTMEGKSPLLLAVDRQSKSFDTNTIKMIDIL
LNKGADPHQKSKSGSTAYELACTRGIDLDNRQDTPRETTI
Run BLAST on NCBI

transcript from alignment at sc0000132:376015..378952+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011733 ID=TCONS_00011733|Name=TCONS_00011733|organism=Clytia hemisphaerica|type=transcript|length=2938bp|location=Sequence derived from alignment at sc0000132:376015..378952+ (Clytia hemisphaerica)
taagACATCTATTGTTCGGATGAAAAGTTATAAATTCTTGATTGGACAGG
ATTTCAAAATCAGTTAGAAAAAAATTCGATTCGTGATACACGCATGTGCa
ttgatgaaaatatttgaagttTGAGTTGATATCATAGATTTCgtgtttga
caaaaaaaactaaatcaaaAATGACTCGAAGAAAGATGGGTGTAGCTGGT
AAGTCCTTTTACGGGGGATGTTTTAAAAACTCTTTTAAATATCTTTACAA
CTTGATAAATGATGTTTTAAAAGAGGAatgaaactttttgaatttattcA
ATTAAGAAATAAGTATATAAATCAATTAAGACTAAAATCTGGTTTTATGT
TTTCAGGTTTATTAGATGAATTGGCTCGTGGTAACAACGTGGCCCAACTT
GAGCAAATTTTAGTAGAAAATGAACATGTCAATAACAATGATAATGAATC
CAAAAGCACCGCACTCCACACAGCCGCAACAAAAGGCTTTGCTGAAGTAG
TAGCAGCTTTGATCCGCGCTGGAGCGAATGTTCGTTTACAGAATTGGAAA
GGCTTGACACCGATCCACCTTGCAGCTCACCATGGTCGATTGAACGTTCT
AAAACTTCTTCTATCTTATGATCCTACTCTCTTAAACATGACGGACTTAA
CTGGAAACACACTGATCAACATTGCAGCACACAAAGGACATGTTAGTGTC
GTTGaatatcttttgaaagaaactgaGATTGACTTCCGCTTGAAAAATAA
GCACGGTAACACAAGTTTTCATTCGGCAACTCTTGGTAGACGtctcaaag
ttttgaaagtcttaCTCCACTATCATCCTGAAGCAATCAATGAAACGAAC
AAAGATGGTAACACTCCCCTACATCTAGCATCAGAACGAGGCTATGCTAC
AATAATGCAATTGTTGTTGTCACGTGGAGCACGCGGCACCAAGCGGAATA
ACAGAAATAAAACACCATTCCACTTGTCACCTTTGGAAGGGCAAAAGGTC
TTTAGAAAGTTCGAAAACTACAAAGACATCCTAACAAAGTAAGCATTATT
CAGATATTACGTTGCTCAATAGTGACTTTGAGACTTTTTGAGATGATGAG
AATGCGAGCGAGTGAACAAATTCTTTGGTTTGACCTGCCTGCCAATAGTC
AGTgtgtttctttattttataattaGCAATCAAGAGCTAATTACAATTAC
AATTTGAAAAGTTAATCTGATTAAAAGAGGATTTAAACGAGGCATTGTTT
ATATAGTTCATACAAATGTGATTAGCCTCCCACCTGTTTAAATAATCCTC
TTGGAATTTTGATTATTGAGGCCTTGGAAAATACCTAGCTGTCAATTCGG
AGAGTTTCTAAGCTAAAAGAAAGGTCTGACTAATCTTTTGTTTGGGATAT
TATGCTTTTGAGTAGGGCTTAAAATCTGCCCAAATATTTGCTCAAAAATG
TAAACTTACTTAAAAGTAGACAAAAACATTTTAGTTACTAATTACTTTCC
TTCCTTTTTTTTAGATGTTCGAACGATTTGGCTCCACTCCTCATCACCAA
ACGTTACGAGGACGATGACACAGCACTCCACATCGCCGCTTTTTTCGaga
caaaatttgacgtcattcGGCTGCTCGTCCAATCAGGACACTCCGTTAAT
TGTTACAACTGTCACAATCAAACACCCCTGTTCGTCGCCGTAGAAATGGA
AAATACAATCAACGCTCGTACATTGGTGACTTTAGGCGGCCGCGTAGATG
ACGTAGAATCCACACGCGGGCAAACACCACTTCATGTCGCCACGTTTAAA
GACAATGTAGAGATGCTCAAAATCTTAACTCGCCGTAACAGTTTAGACGT
CAACGTAGTCGATCAGGATGGAAAAACGCCGTTAGCTTACGCAATCATAC
GTAGCTCACGTGTGGCTGTACAACATTTACTGGAACGTGGTGCTGATACA
GGGATGAAGGACTCCAAAGGCAACAATGCGTTGCATTTGTCTGTAATGAC
CAAAAACACTGAAATCACTGAAGACGTCCTATCCGTCGGAAATCAGTCAC
TTATCAACGAAAAAACAATGGAGGGTAAATCTCCACTTTTATTAGCAGTA
GACCGCCAAAGCAAAAGCTTTGATACCAACACTATTAAAATGATTGACAT
TTTATTGAACAAAGGTGCCGACCCACATCAGAAGAGTAAGTCCGGATCAA
CAGCTTACGAGCTAGCCTGTACTCGTGGTATTGACTTGGACAACAGGCAA
GACACGCCACGCGAGACAACCATATGAATAAAGACAgacaaaaatatgac
tttttaaTGATTAGCAAATATTACAATTAAAATGAGAGCTGGCATCTCAT
ATTGATTAATTAATTTTGAAAGCacctgtacacgttttttttttataagc
aactaaATCTTTGGGGTCAGGGGTTGCTTAGCTTTCTAGCTCGTTTTCTA
GAAAATTTGCTTTGAACACCCTTGATATTATacataccatatttatgctc
atcgggtcaagggctatcgtttagcatggttagattatctaaaaagcagt
tgcttatttaaaaaaaatgtgcgTAGGGCGTTAAAGGGTGTAAACTTTGG
GAGGAGTGGGGTTGCAAGTagttaaattcttttaaaaaggaTTGACTGCT
TCTCAAATCAAATTTCGGAAAAGGGATAAATTTGACATTTACTATTTACA
AAAAGAGATGAAAAAGATTTATGTAATTATTTCAGaggtattatttttat
tatattatagCAGAATATGTGTAATGTATTATATATTGTAAAAAACACAT
GAAAAATTCTAACTTATGAGtgcaaagcaaaagaaaaaaactgacAGTCA
ACAAAACATATTTCATTTATCATGGATAAGGTGATCCAACATTTGGAAAA
ACAGGAACAAAAAAACACCACATTCAGATGGGTGAAAT

Coding sequence (CDS) from alignment at sc0000132:376015..378952+

>TCONS_00011733 ID=TCONS_00011733|Name=TCONS_00011733|organism=Clytia hemisphaerica|type=CDS|length=4419bp|location=Sequence derived from alignment at sc0000132:376015..378952+ (Clytia hemisphaerica)
ATGACTCGAAGAAAGATGGGTGTAGCTGGTTTATTAGATGAATTGGCTCG
TGGTAACAACGTGGCCCAACTTGAGCAAATTTTAGTAGAAAATGAACATG
TCAATAACAATGATAATGAATCCAAAAGCACCGCACTCCACACAGCCGCA
ACAAAAGGCTTTGCTGAAGTAGTAGCAGCTTTGATCCGCGCTGGAGCGAA
TGTTCGTTTACAGAATTGGAAAGGCTTGACACCGATCCACCTTGCAGCTC
ACCATGGTCGATTGAACGTTCTAAAACTTCTTCTATCTTATGATCCTACT
CTCTTAAACATGACGGACTTAACTGGAAACACACTGATCAACATTGCAGC
ACACAAAGGACATGTTAGTGTCGTTGaatatcttttgaaagaaactgaGA
TTGACTTCCGCTTGAAAAATAAGCACGGTAACACAAGTTTTCATTCGGCA
ACTCTTGGTAGACGtctcaaagttttgaaagtcttaCTCCACTATCATCC
TGAAGCAATCAATGAAACGAACAAAGATGGTAACACTCCCCTACATCTAG
CATCAGAACGAGGCTATGCTACAATAATGCAATTGTTGTTGTCACGTGGA
GCACGCGGCACCAAGCGGAATAACAGAAATAAAACACCATTCCACTTGTC
ACCTTTGGAAGGGCAAAAGGTCTTTAGAAAGTTCGAAAACTACAAAGACA
TCCTAACAAAATGTTCGAACGATTTGGCTCCACTCCTCATCACCAAACGT
TACGAGGACGATGACACAGCACTCCACATCGCCGCTTTTTTCGagacaaa
atttgacgtcattcGGCTGCTCGTCCAATCAGGACACTCCGTTAATTGTT
ACAACTGTCACAATCAAACACCCCTGTTCGTCGCCGTAGAAATGGAAAAT
ACAATCAACGCTCGTACATTGGTGACTTTAGGCGGCCGCGTAGATGACGT
AGAATCCACACGCGGGCAAACACCACTTCATGTCGCCACGTTTAAAGACA
ATGTAGAGATGCTCAAAATCTTAACTCGCCGTAACAGTTTAGACGTCAAC
GTAGTCGATCAGGATGGAAAAACGCCGTTAGCTTACGCAATCATACGTAG
CTCACGTGTGGCTGTACAACATTTACTGGAACGTGGTGCTGATACAGGGA
TGAAGGACTCCAAAGGCAACAATGCGTTGCATTTGTCTGTAATGACCAAA
AACACTGAAATCACTGAAGACGTCCTATCCGTCGGAAATCAGTCACTTAT
CAACGAAAAAACAATGGAGGGTAAATCTCCACTTTTATTAGCAGTAGACC
GCCAAAGCAAAAGCTTTGATACCAACACTATTAAAATGATTGACATTTTA
TTGAACAAAGGTGCCGACCCACATCAGAAGAGTAAGTCCGGATCAACAGC
TTACGAGCTAGCCTGTACTCGTGGTATTGACTTGGACAACAGGCAAGACA
CGCCACGCGAGACAACCATATGAATGACTCGAAGAAAGATGGGTGTAGCT
GGTTTATTAGATGAATTGGCTCGTGGTAACAACGTGGCCCAACTTGAGCA
AATTTTAGTAGAAAATGAACATGTCAATAACAATGATAATGAATCCAAAA
GCACCGCACTCCACACAGCCGCAACAAAAGGCTTTGCTGAAGTAGTAGCA
GCTTTGATCCGCGCTGGAGCGAATGTTCGTTTACAGAATTGGAAAGGCTT
GACACCGATCCACCTTGCAGCTCACCATGGTCGATTGAACGTTCTAAAAC
TTCTTCTATCTTATGATCCTACTCTCTTAAACATGACGGACTTAACTGGA
AACACACTGATCAACATTGCAGCACACAAAGGACATGTTAGTGTCGTTGa
atatcttttgaaagaaactgaGATTGACTTCCGCTTGAAAAATAAGCACG
GTAACACAAGTTTTCATTCGGCAACTCTTGGTAGACGtctcaaagttttg
aaagtcttaCTCCACTATCATCCTGAAGCAATCAATGAAACGAACAAAGA
TGGTAACACTCCCCTACATCTAGCATCAGAACGAGGCTATGCTACAATAA
TGCAATTGTTGTTGTCACGTGGAGCACGCGGCACCAAGCGGAATAACAGA
AATAAAACACCATTCCACTTGTCACCTTTGGAAGGGCAAAAGGTCTTTAG
AAAGTTCGAAAACTACAAAGACATCCTAACAAAATGTTCGAACGATTTGG
CTCCACTCCTCATCACCAAACGTTACGAGGACGATGACACAGCACTCCAC
ATCGCCGCTTTTTTCGagacaaaatttgacgtcattcGGCTGCTCGTCCA
ATCAGGACACTCCGTTAATTGTTACAACTGTCACAATCAAACACCCCTGT
TCGTCGCCGTAGAAATGGAAAATACAATCAACGCTCGTACATTGGTGACT
TTAGGCGGCCGCGTAGATGACGTAGAATCCACACGCGGGCAAACACCACT
TCATGTCGCCACGTTTAAAGACAATGTAGAGATGCTCAAAATCTTAACTC
GCCGTAACAGTTTAGACGTCAACGTAGTCGATCAGGATGGAAAAACGCCG
TTAGCTTACGCAATCATACGTAGCTCACGTGTGGCTGTACAACATTTACT
GGAACGTGGTGCTGATACAGGGATGAAGGACTCCAAAGGCAACAATGCGT
TGCATTTGTCTGTAATGACCAAAAACACTGAAATCACTGAAGACGTCCTA
TCCGTCGGAAATCAGTCACTTATCAACGAAAAAACAATGGAGGGTAAATC
TCCACTTTTATTAGCAGTAGACCGCCAAAGCAAAAGCTTTGATACCAACA
CTATTAAAATGATTGACATTTTATTGAACAAAGGTGCCGACCCACATCAG
AAGAGTAAGTCCGGATCAACAGCTTACGAGCTAGCCTGTACTCGTGGTAT
TGACTTGGACAACAGGCAAGACACGCCACGCGAGACAACCATATGAATGA
CTCGAAGAAAGATGGGTGTAGCTGGTTTATTAGATGAATTGGCTCGTGGT
AACAACGTGGCCCAACTTGAGCAAATTTTAGTAGAAAATGAACATGTCAA
TAACAATGATAATGAATCCAAAAGCACCGCACTCCACACAGCCGCAACAA
AAGGCTTTGCTGAAGTAGTAGCAGCTTTGATCCGCGCTGGAGCGAATGTT
CGTTTACAGAATTGGAAAGGCTTGACACCGATCCACCTTGCAGCTCACCA
TGGTCGATTGAACGTTCTAAAACTTCTTCTATCTTATGATCCTACTCTCT
TAAACATGACGGACTTAACTGGAAACACACTGATCAACATTGCAGCACAC
AAAGGACATGTTAGTGTCGTTGaatatcttttgaaagaaactgaGATTGA
CTTCCGCTTGAAAAATAAGCACGGTAACACAAGTTTTCATTCGGCAACTC
TTGGTAGACGtctcaaagttttgaaagtcttaCTCCACTATCATCCTGAA
GCAATCAATGAAACGAACAAAGATGGTAACACTCCCCTACATCTAGCATC
AGAACGAGGCTATGCTACAATAATGCAATTGTTGTTGTCACGTGGAGCAC
GCGGCACCAAGCGGAATAACAGAAATAAAACACCATTCCACTTGTCACCT
TTGGAAGGGCAAAAGGTCTTTAGAAAGTTCGAAAACTACAAAGACATCCT
AACAAAATGTTCGAACGATTTGGCTCCACTCCTCATCACCAAACGTTACG
AGGACGATGACACAGCACTCCACATCGCCGCTTTTTTCGagacaaaattt
gacgtcattcGGCTGCTCGTCCAATCAGGACACTCCGTTAATTGTTACAA
CTGTCACAATCAAACACCCCTGTTCGTCGCCGTAGAAATGGAAAATACAA
TCAACGCTCGTACATTGGTGACTTTAGGCGGCCGCGTAGATGACGTAGAA
TCCACACGCGGGCAAACACCACTTCATGTCGCCACGTTTAAAGACAATGT
AGAGATGCTCAAAATCTTAACTCGCCGTAACAGTTTAGACGTCAACGTAG
TCGATCAGGATGGAAAAACGCCGTTAGCTTACGCAATCATACGTAGCTCA
CGTGTGGCTGTACAACATTTACTGGAACGTGGTGCTGATACAGGGATGAA
GGACTCCAAAGGCAACAATGCGTTGCATTTGTCTGTAATGACCAAAAACA
CTGAAATCACTGAAGACGTCCTATCCGTCGGAAATCAGTCACTTATCAAC
GAAAAAACAATGGAGGGTAAATCTCCACTTTTATTAGCAGTAGACCGCCA
AAGCAAAAGCTTTGATACCAACACTATTAAAATGATTGACATTTTATTGA
ACAAAGGTGCCGACCCACATCAGAAGAGTAAGTCCGGATCAACAGCTTAC
GAGCTAGCCTGTACTCGTGGTATTGACTTGGACAACAGGCAAGACACGCC
ACGCGAGACAACCATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006595XLOC_006595Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011733-proteinTCONS_00011733-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011733-exon-sc0000132-1491911889:376015..376212TCONS_00011733-exon-sc0000132-1491911889:376015..376212Clytia hemisphaericaexon
TCONS_00011733-exon-sc0000132-1510915933:376015..376212TCONS_00011733-exon-sc0000132-1510915933:376015..376212Clytia hemisphaericaexon
TCONS_00011733-exon-sc0000132-1575043694:376015..376212TCONS_00011733-exon-sc0000132-1575043694:376015..376212Clytia hemisphaericaexon
TCONS_00011733-exon-sc0000132-1491911889:376371..377052TCONS_00011733-exon-sc0000132-1491911889:376371..377052Clytia hemisphaericaexon
TCONS_00011733-exon-sc0000132-1510915933:376371..377052TCONS_00011733-exon-sc0000132-1510915933:376371..377052Clytia hemisphaericaexon
TCONS_00011733-exon-sc0000132-1575043694:376371..377052TCONS_00011733-exon-sc0000132-1575043694:376371..377052Clytia hemisphaericaexon
TCONS_00011733-exon-sc0000132-1491911889:377529..378952TCONS_00011733-exon-sc0000132-1491911889:377529..378952Clytia hemisphaericaexon
TCONS_00011733-exon-sc0000132-1510915933:377529..378952TCONS_00011733-exon-sc0000132-1510915933:377529..378952Clytia hemisphaericaexon
TCONS_00011733-exon-sc0000132-1575043694:377529..378952TCONS_00011733-exon-sc0000132-1575043694:377529..378952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:376015..378952 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0766964	0.0187589	9.56874	8.89677	7.35892	8.8053	7.33497	37.7563	21.9437	10.173	43.6763	37.3931	40.137	58.9547	15.4967	20.1314	44.1222	37.7315	1.70281	3.18653	2.99018	3.12452	3.89091	9.1357	4.06359	1.23908	124.974	87.2862
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00011733 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.594e-33
Identity = 130/454 (28.63%), Postives = 215/454 (47.36%), Query Frame = 3 
Query:  300 TALHTAATKGFAEVVAALIRAGANVRLQNWKGLTPIHLAAHHGRLNVLKLLLSYDPTLLNMTDLTGNTLINIAAHKGHVSVVEYLLKETEIDFRLKNKHGNTSFHSATLGXXXXXXXXXXHYHPEAINETNKDGNTPLHLASERGYATIMQLLLSRGARGTKRNNRNKTPFHLSPLEGQKVFRK--FENYKDILTKCSNDLAPL--------------------LITKRYEDDDTALHIAAFFETKFDVIRLLVQSGHSVNCYNCHNQTPLFVAVEMENTINARTLVTLGGRVDDVESTRGQTPLHVATFKDNVEMLKILTRRNSLDVNVVDQDGKTPLAYAIIRSSRVAVQHLLERGADTGMKDSKGNNALHLSVMTKNTEITEDVLSVGNQSLINEKTMEGKSPLLLAVDRQSKSFDTNTIKMIDILLNKGADPHQKSKSGSTAYELACTRG 1595
            TALH AA  G  EVV  L+  GANV  Q+ KG TP+++AA    L V+K LL       N+    G T + +A  +GH +VV +L     I++  K K    + H A      +   VLL   P   +  +K G TPLH+A+      + QLLL+RGA          TP H++   G  +  +   +    I TK  ++L PL                     I  + ++  + +H+AA  +   D +RLL+Q    ++     + TPL VA    +   A+ L+  G + +   +  G TPLH+A  K++V ++++L +  +  ++ V + G TPL  A        V++LL+RGA   + + K    LH++    +TE+ + +L   N++ +N K  + ++PL  A    ++   TN   M+ +LL   A+P+  + +G T   +A   G
Sbjct:   80 TALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGAN-QNVATEDGFTPLAVALQQGHENVVAHL-----INYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNP-DVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGD-HLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNS-RALNGFTPLHIACKKNHVRVMELLLKTGA-SIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTPLHCA----ARIGHTN---MVKLLLENNANPNLATTAGHTPLHIAAREG 514

HSP 2 Score: 109.383 bits (272), Expect = 3.066e-24
Identity = 126/483 (26.09%), Postives = 199/483 (41.20%), Query Frame = 3 
Query:  300 TALHTAATKGFAEVVAALIRAGANVRLQNWKGLTPIHLAAHHGRLNVLKLLLSYDPTLLNMTDLTGNTLINIAAHKGHVSVVEYLLKETEIDFRLKNKHGNTSFHSATL-----------------GXXXXXXXXXXHYHPEA---------------INETNKDGNTPLHLASERGYATIMQLLLSRGARGTKRNNRNKTPFHLSPLEG--QKVFRKFENYKDILTKCSNDLAPLLITKRY----------EDDD----------TALHIAAFFETKFDVIRLLVQSGHSVNCYNCHNQTPLFVAVEMENTINARTLVTLGGRVDDVESTRGQTPLHVATFKDNVEMLKILTRRNSLDVNVVDQDGKTPLAYAIIRSSRVAVQH-LLERGADTGMKDSKGNNALHLSVMTKNTEITEDVLSVGNQSLINEKTMEGKSPLLLAVDRQSKSFDTNTIKMIDILLNKGADPHQKSKSGSTAYELA 1583
            + +H AA     + V  L++  A +       LTP+H+AAH G   V K+LL       N   L G T ++IA  K HV V+E LLK T        + G T  H A+                        ++  LH    A               +N   KD  TPLH A+  G+  +++LLL   A          TP H++  EG  + V    E              PL +  +Y          E D           T LH+ A      D+++LL+  G S +    +  TPL +A +      AR+L+  GG   + ES +G TPLH+A  + + EM+ +L  + + + N+ ++ G TPL + + +   V V   L++ G         G   LH++    N ++ + +L   +Q+ +N KT  G SPL  A  +           ++ +LL  GA P++ S  G+T   +A
Sbjct:  307 SPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKG-AKPNSRALNGFTPLHIACKKNHVRVMELLLK-TGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV-AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQA-NGNLGNKSGLTPL-HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQ-------GHTDIVTLLLKNGASPNEVSSDGTTPLAIA 774

HSP 3 Score: 105.916 bits (263), Expect = 3.752e-23
Identity = 123/417 (29.50%), Postives = 183/417 (43.88%), Query Frame = 3 
Query:  300 TALHTAATKGFAEVVAALIRAGANVRLQNWKGLTPIHLAAHHGRLNVLKLLLSYDPTLLNMTDLTGNTLINIAAHKGHVSVVEYLLKETEIDFRLKNKHGNTSFH-SATLGXXXXXXXXXXH-YHPEAINETNKDGNTPLHLASERGYATIMQLLLSRGARGTKRNNRNKTPFHLSPLEGQ-KVFRKFENYKDILTKCSNDLAPLLITKRYEDDDTALHIAAFFETKFDVIRLLVQSGHSVNCYNCHNQTPLFVAVEMENTINARTLVTLGGRVDDVESTR-GQTPLHVATFKDNVEMLKILTRRNSLDVNVVDQDGKTPLAYAIIRSSRVAVQHLLERGADTGMKDSKGNNALHLSVMTKNTEITEDVLSVGNQSLINEKTMEGKSPLLLAVDRQSKSFDTNTIKMIDILLNKGAD 1538
            T LH AA  G  EV   L++  A V  +     TP+H AA  G  N++KLLL  +    N+    G+T ++IAA +GHV  V  LL E E       K G T  H +A  G+      +L    HP   N   K+G TPLH+A       I++LLL RG           TP H++  + Q +V R    Y       S                T LH+AA  E   +++ LL+    + N  N    TPL +  +  +   A  L+  G  VD   +TR G TPLHVA+   N++++K L +  + DVN   + G +PL  A  +     V  LL+ GA      S G   L ++       +T DVL          K +  ++  +L  D+   SF     +++D+  ++G +
Sbjct:  439 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALL-EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV------------TPLHLAAQ-EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--ATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT-DVL----------KVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEE 823
The following BLAST results are available for this feature:
BLAST of TCONS_00011733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANK11.594e-3328.63Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3[more]
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