|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011726 ID=TCONS_00011726|Name=TCONS_00011726|organism=Clytia hemisphaerica|type=transcript|length=638bp
tatgcatgtcattatgtgcatatatttatttgcagccatgggattcatgc
aggaaaatctgtcaacaggggttcacctgatttctaggtgaaccaagctc
tataattttagaagtttgtctggctgaggtaaaacttattttttctaaaa
ttttgagcttggatatccaggctaacccAAGACCATGTTTTCAAGTGTCA
AAGAAAAGTCTGGATAGTTAATTAAATAAATCAAGAACTCTCGATGGATG
TTTGTTCTGCTGGTCCTTACCTTACATTCTATGATTGCTGTTGGCTACTC
TACTGCtgaattccttcaaaaacaataaacatTGCTGACTGATGACAACC
AATCCAAGAAGCTCCCATCCACACACGTTTGTTACTTACGTACTCGTTCT
CCTCGAAGTTACAGTCCAAGATGCACCTGTCTTCACTCTCTTCCTTGGAT
GGTCTTTCaacaaaatggaaagttaaGTTAACAGTCTTGATGATTGGCGA
CGACGCCCACGTCCGACGACGAGGACGCACAAGCAGCAGCGCAGCTAGTC
CCAGCCAGGTTTTTTCCCCAAAAGGTGTTTTTAGTCCAGGGACTAGTCTT
TTTTGTCTTCTTTTGGGATGTATCACGCAATATGCTNN Run BLAST on NCBI transcript from alignment at sc0000132:274948..278692+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011726 ID=TCONS_00011726|Name=TCONS_00011726|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at sc0000132:274948..278692+ (Clytia hemisphaerica)
tatgcatgtcattatgtgcatatatttatttgcagccatgggattcatgc
aggaaaatctgtcaacaggggttcacctgatttctaggtgaaccaagctc
tataattttagaagtttgtctggctgaggtaaaacttattttttctaaaa
ttttgagcttggatatccaggctaacccAAGACCATGTTTTCAAGTGTCA
AAGAAAAGTCTGGATAGTTAATTAAATAAATCAAGAACTCTCGATGGATG
TTTGTTCTGCTGGTCCTTACCTTACATTCTATGATTGCTGTTGGCTACTC
TACTGCtgaattccttcaaaaacaataaacatTGCTGACTGATGACAACC
AATCCAAGAAGCTCCCATCCACACACGTTTGTTACTTACGTACTCGTTCT
CCTCGAAGTTACAGTCCAAGATGCACCTGTCTTCACTCTCTTCCTTGGAT
GGTCTTTCaacaaaatggaaagttaaGTTAACAGTCTTGTAAGTTCAAAT
TTCTATTCTCATCCTACCCCCTCCATCCAACAATCAAATCTTGGTATCTG
TTATGGTCTACCTTGATGGTACGTGTACGTCCCTGAGTTTGTTTTGCTGG
TCATGGCACATGGGCAATCTTAGTCGTGGAAAGGAACCACATTAGGTTTG
CGTACCCTTGCTTTGTTGGTTTCAAGTTGCAATTTTGTCTTTCATttctc
tgggggggggggcttctaACTATCCACCCATGTGCTCATATATCGGAAGT
CGGGCAGTTGTTTTCACCCCTTTTTTTTTCCCTTCCTTTTAATCCCTGGT
AACGTCCAATGACGTTGATACATTAGCCATTTCATTATTCTAGCCTACGA
ACCTTTGGAAGCCTCGGTTGATAGCCCTGGGTTTCACGTGTTATCATCTT
TTacctttttgtttttaactggGGTTTTTAACTATCCACCCATGGGTTCA
TTTGTCAAGTCGGGCAGTTGTTTTTCACCCCATTTGTTCTCCCTTCTTTA
ATCCCTGTTGATACCCTATGGTGTTGGTTGATACACTGGTAATTATTTCA
GCTTTATAAAATGCACCTTTGGGAAATCTACTGGTTGGATAGCCCTGGGT
TTATGTGTTATGTTTCACCTTTTGTTTTTAACTGGGTTTCTCACTATCCA
CCCAAAAGTTAGGCACTACTTACTTCAAGTTAGGCATTTGTTTTTCACCC
CTCTTTTTTCATGCTATCATTCCTGTTGACGTCCAATGACGTCATGATGC
ATAGTTAATTATTTAGCCTATGAACTTTTGGAGACCTACTGGTTGGATAG
CCCTGGGTTTCTGTGTTGTCatgttttacttttgtttttaactgGGTTTC
TAACTATCCACCCAAGAGTTCACCTGTAAGTTAGACAGTTGTTTTTCACC
CTTCTTTTCTTCATCCTATCACTCATGCCGACGTCCAATGACGTCATGAT
ACATTGGTCATTACTTAGCCTATGAATTTTTGGGAACCTGCTGATTAGAT
AGCCCTGGGTCTGTGCTGTCAtgtttacttttgttttagttGGGTTTCTA
ACTATCCACCCATGGGTTCACCTGTAAATTGCggagttttttctttttct
ttttttcacctGGCCTTTTTTGTTTGTTCTCATTCTATTATGCCTGGCGA
CGTCTAATGACGTCATGATACGCTGGTAATAATCTTAGCCTATGATCCCA
TGCAAACCTCGAAACCTACTGGTTGGGTAGCTCTTGGTCTTGTGTCGTCA
AGTTTTATTTTGTCTTAACTGGGTTTCTTACTATCCAACCTTGGGTTCAC
ATGTAAGTGGGAcagatatttttcttttctttcttgttttctCTTGCTAC
AATCCCTGGTGACGTCGAATGACGTCACGATTATGACGTCACGATTCAAT
GGTAATTATATTAGCAATGAACATCTGGGAATTTACTTGTTGAGATATgg
gctttgtttttattttttttttttttttacacctATTCTCTATACAGCTG
TAACATAAATTGGGTCTGGAGACTTCACAATAAGTAGATTGCCTTTTTGG
TTTCAACTACCCTGGGACTTGGTTCCCTTTCTTTCCCTGAAACATACCCC
ACAGAGATACAGTGCTTAGATTAAAAGTCATATGTCACCATCCTCAAATA
ATCTTATATTTAGCAGATCCCTTGCATTAAATGTCCAAACAATTTTACCC
TCAGATCTCAATTCAGACCATCCTGCCTTGCTCATAtggctgtcctcctt
acagtcctTCGACAGGCCGTCAACCCTACGGTCTTAGACACCTCCAATCA
TCCTCATTACAATCTAGACTAAAATCCATCATCCCTATCAGGACATGGGC
TCAGGTTATTCTCACCAGGATATAGGCTCAGGCCATCTTCATCAAATACA
TAGGCTCAGGCTATTCTCATTATGACCTATAGGGAAAACTTTAAAGCATT
AAGACTAAGACTGTCATCCTTTTAGTAAGAGTTAGCTTCCTAATGTGTAA
TGACTTCTTTTTGAGTTTGGCTGCTGATTTGGGGATGTATTGTGCGGGTA
GTTTTGGGGACGTTTTGGGGGTGTGGGTCCCTTCGGAACCCCATACTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNtaataataatgatatatttctggca
tttccaaaatttacatttggctcttcacctgaaaattctgtatataatat
atgtgcaatgtctagaaaaaaaatgtaaaataaccTGGTAGTATACTGAA
GAAAAATTGGGACCGTATGCGGACAAGCAGATAGGGACGAAGCGGTGGGC
TAGTATGACGAATAAAATGATTTGGATTGAGAAGTATAAGGGGTAAAATG
TGAATAGTGATAGAGCTAGACTAAAACCTAAACAAATCCGAGTATCTGAG
TATGCTAGCTGATGCCATCACAATGTGtgctattataaaaaattaaggaa
tatatttaaaaaaaaatactaacataATGTTATAAGCTAGACTAGACTAA
GGTTCAAGTACTATTGGTGGCTAGAGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaaaacttcatagAACTAGA
ATATAATAAAGTCATATATAtgcactgaagaaaatacaGACTAAGTAAAC
CTAAGAACAGATGGGCTAAATCTAAAATCAGAATGGAGACTAGGAAACCA
AGGCTACGAGTAGGGATATTAGAAGAATTTAAATCAGAATTAatttaaaa
ctaaaatggcgcGTGAATCAAATCTTCACCTGTTTACACTGTTAACAACA
TTTCGACCCTCCGACGTAAAAATTAATTAGAGCTAACTTTAGTTAGGTTA
GGTTAATTTTAAGGAAGACAAATCAACGCCCGCAATACACCCTTCCGCCA
TCATGCTACGCACTCTAGAAGCCATTGCTCAAATCCCAGTATCACTATTT
ATACGGGAGTGAAACCACGCTTAGTCTTTCTTATTCTTGTGTTTTCAATT
TCCCACCCTCCCTTCCCTTCCATACATGGAGTTAGGGAGGGACGTGGTAC
ATATATGCGCCAGttttttgcttgcttttttCTCTCTCATTTCAGGATGA
TTGGCGACGACGCCCACGTCCGACGACGAGGACGCACAAGCAGCAGCGCA
GCTAGTCCCAGCCAGGTTTTTTCCCCAAAAGGTGTTTTTAGTCCAGGGAC
TAGTCTTTTTTGTCTTCTTTTGGGATGTATCACGCAATATGCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011726-exon-sc0000132-1491911889:274948..275435 | TCONS_00011726-exon-sc0000132-1491911889:274948..275435 | Clytia hemisphaerica | exon |
| TCONS_00011726-exon-sc0000132-1510915933:274948..275435 | TCONS_00011726-exon-sc0000132-1510915933:274948..275435 | Clytia hemisphaerica | exon |
| TCONS_00011726-exon-sc0000132-1575043694:274948..275435 | TCONS_00011726-exon-sc0000132-1575043694:274948..275435 | Clytia hemisphaerica | exon |
| TCONS_00011726-exon-sc0000132-1491911889:278543..278692 | TCONS_00011726-exon-sc0000132-1491911889:278543..278692 | Clytia hemisphaerica | exon |
| TCONS_00011726-exon-sc0000132-1510915933:278543..278692 | TCONS_00011726-exon-sc0000132-1510915933:278543..278692 | Clytia hemisphaerica | exon |
| TCONS_00011726-exon-sc0000132-1575043694:278543..278692 | TCONS_00011726-exon-sc0000132-1575043694:278543..278692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:274948..278692 + |
Blast
The following BLAST results are available for this feature:
|
