TCONS_00011725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011725
Unique NameTCONS_00011725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011725 ID=TCONS_00011725|Name=TCONS_00011725|organism=Clytia hemisphaerica|type=transcript|length=3745bp
tatgcatgtcattatgtgcatatatttatttgcagccatgggattcatgc
aggaaaatctgtcaacaggggttcacctgatttctaggtgaaccaagctc
tataattttagaagtttgtctggctgaggtaaaacttattttttctaaaa
ttttgagcttggatatccaggctaacccAAGACCATGTTTTCAAGTGTCA
AAGAAAAGTCTGGATAGTTAATTAAATAAATCAAGAACTCTCGATGGATG
TTTGTTCTGCTGGTCCTTACCTTACATTCTATGATTGCTGTTGGCTACTC
TACTGCtgaattccttcaaaaacaataaacatTGCTGACTGATGACAACC
AATCCAAGAAGCTCCCATCCACACACGTTTGTTACTTACGTACTCGTTCT
CCTCGAAGTTACAGTCCAAGATGCACCTGTCTTCACTCTCTTCCTTGGAT
GGTCTTTCaacaaaatggaaagttaaGTTAACAGTCTTGTAAGTTCAAAT
TTCTATTCTCATCCTACCCCCTCCATCCAACAATCAAATCTTGGTATCTG
TTATGGTCTACCTTGATGGTACGTGTACGTCCCTGAGTTTGTTTTGCTGG
TCATGGCACATGGGCAATCTTAGTCGTGGAAAGGAACCACATTAGGTTTG
CGTACCCTTGCTTTGTTGGTTTCAAGTTGCAATTTTGTCTTTCATttctc
tgggggggggggcttctaACTATCCACCCATGTGCTCATATATCGGAAGT
CGGGCAGTTGTTTTCACCCCTTTTTTTTTCCCTTCCTTTTAATCCCTGGT
AACGTCCAATGACGTTGATACATTAGCCATTTCATTATTCTAGCCTACGA
ACCTTTGGAAGCCTCGGTTGATAGCCCTGGGTTTCACGTGTTATCATCTT
TTacctttttgtttttaactggGGTTTTTAACTATCCACCCATGGGTTCA
TTTGTCAAGTCGGGCAGTTGTTTTTCACCCCATTTGTTCTCCCTTCTTTA
ATCCCTGTTGATACCCTATGGTGTTGGTTGATACACTGGTAATTATTTCA
GCTTTATAAAATGCACCTTTGGGAAATCTACTGGTTGGATAGCCCTGGGT
TTATGTGTTATGTTTCACCTTTTGTTTTTAACTGGGTTTCTCACTATCCA
CCCAAAAGTTAGGCACTACTTACTTCAAGTTAGGCATTTGTTTTTCACCC
CTCTTTTTTCATGCTATCATTCCTGTTGACGTCCAATGACGTCATGATGC
ATAGTTAATTATTTAGCCTATGAACTTTTGGAGACCTACTGGTTGGATAG
CCCTGGGTTTCTGTGTTGTCatgttttacttttgtttttaactgGGTTTC
TAACTATCCACCCAAGAGTTCACCTGTAAGTTAGACAGTTGTTTTTCACC
CTTCTTTTCTTCATCCTATCACTCATGCCGACGTCCAATGACGTCATGAT
ACATTGGTCATTACTTAGCCTATGAATTTTTGGGAACCTGCTGATTAGAT
AGCCCTGGGTCTGTGCTGTCAtgtttacttttgttttagttGGGTTTCTA
ACTATCCACCCATGGGTTCACCTGTAAATTGCggagttttttctttttct
ttttttcacctGGCCTTTTTTGTTTGTTCTCATTCTATTATGCCTGGCGA
CGTCTAATGACGTCATGATACGCTGGTAATAATCTTAGCCTATGATCCCA
TGCAAACCTCGAAACCTACTGGTTGGGTAGCTCTTGGTCTTGTGTCGTCA
AGTTTTATTTTGTCTTAACTGGGTTTCTTACTATCCAACCTTGGGTTCAC
ATGTAAGTGGGAcagatatttttcttttctttcttgttttctCTTGCTAC
AATCCCTGGTGACGTCGAATGACGTCACGATTATGACGTCACGATTCAAT
GGTAATTATATTAGCAATGAACATCTGGGAATTTACTTGTTGAGATATgg
gctttgtttttattttttttttttttttacacctATTCTCTATACAGCTG
TAACATAAATTGGGTCTGGAGACTTCACAATAAGTAGATTGCCTTTTTGG
TTTCAACTACCCTGGGACTTGGTTCCCTTTCTTTCCCTGAAACATACCCC
ACAGAGATACAGTGCTTAGATTAAAAGTCATATGTCACCATCCTCAAATA
ATCTTATATTTAGCAGATCCCTTGCATTAAATGTCCAAACAATTTTACCC
TCAGATCTCAATTCAGACCATCCTGCCTTGCTCATAtggctgtcctcctt
acagtcctTCGACAGGCCGTCAACCCTACGGTCTTAGACACCTCCAATCA
TCCTCATTACAATCTAGACTAAAATCCATCATCCCTATCAGGACATGGGC
TCAGGTTATTCTCACCAGGATATAGGCTCAGGCCATCTTCATCAAATACA
TAGGCTCAGGCTATTCTCATTATGACCTATAGGGAAAACTTTAAAGCATT
AAGACTAAGACTGTCATCCTTTTAGTAAGAGTTAGCTTCCTAATGTGTAA
TGACTTCTTTTTGAGTTTGGCTGCTGATTTGGGGATGTATTGTGCGGGTA
GTTTTGGGGACGTTTTGGGGGTGTGGGTCCCTTCGGAACCCCATACTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNtaataataatgatatatttctggca
tttccaaaatttacatttggctcttcacctgaaaattctgtatataatat
atgtgcaatgtctagaaaaaaaatgtaaaataaccTGGTAGTATACTGAA
GAAAAATTGGGACCGTATGCGGACAAGCAGATAGGGACGAAGCGGTGGGC
TAGTATGACGAATAAAATGATTTGGATTGAGAAGTATAAGGGGTAAAATG
TGAATAGTGATAGAGCTAGACTAAAACCTAAACAAATCCGAGTATCTGAG
TATGCTAGCTGATGCCATCACAATGTGtgctattataaaaaattaaggaa
tatatttaaaaaaaaatactaacataATGTTATAAGCTAGACTAGACTAA
GGTTCAAGTACTATTGGTGGCTAGAGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaaaacttcatagAACTAGA
ATATAATAAAGTCATATATAtgcactgaagaaaatacaGACTAAGTAAAC
CTAAGAACAGATGGGCTAAATCTAAAATCAGAATGGAGACTAGGAAACCA
AGGCTACGAGTAGGGATATTAGAAGAATTTAAATCAGAATTAatttaaaa
ctaaaatggcgcGTGAATCAAATCTTCACCTGTTTACACTGTTAACAACA
TTTCGACCCTCCGACGTAAAAATTAATTAGAGCTAACTTTAGTTAGGTTA
GGTTAATTTTAAGGAAGACAAATCAACGCCCGCAATACACCCTTCCGCCA
TCATGCTACGCACTCTAGAAGCCATTGCTCAAATCCCAGTATCACTATTT
ATACGGGAGTGAAACCACGCTTAGTCTTTCTTATTCTTGTGTTTTCAATT
TCCCACCCTCCCTTCCCTTCCATACATGGAGTTAGGGAGGGACGTGGTAC
ATATATGCGCCAGttttttgcttgcttttttCTCTCTCATTTCAGGATGA
TTGGCGACGACGCCCACGTCCGACGACGAGGACGCACAAGCAGCAGCGCA
GCTAGTCCCAGCCAGGTTTTTTCCCCAAAAGGTGTTTTTAGTCCAGGGAC
TAGTCTTTTTTGTCTTCTTTTGGGATGTATCACGCAATATGCTNN
Run BLAST on NCBI

transcript from alignment at sc0000132:274948..278692+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011725 ID=TCONS_00011725|Name=TCONS_00011725|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at sc0000132:274948..278692+ (Clytia hemisphaerica)
tatgcatgtcattatgtgcatatatttatttgcagccatgggattcatgc
aggaaaatctgtcaacaggggttcacctgatttctaggtgaaccaagctc
tataattttagaagtttgtctggctgaggtaaaacttattttttctaaaa
ttttgagcttggatatccaggctaacccAAGACCATGTTTTCAAGTGTCA
AAGAAAAGTCTGGATAGTTAATTAAATAAATCAAGAACTCTCGATGGATG
TTTGTTCTGCTGGTCCTTACCTTACATTCTATGATTGCTGTTGGCTACTC
TACTGCtgaattccttcaaaaacaataaacatTGCTGACTGATGACAACC
AATCCAAGAAGCTCCCATCCACACACGTTTGTTACTTACGTACTCGTTCT
CCTCGAAGTTACAGTCCAAGATGCACCTGTCTTCACTCTCTTCCTTGGAT
GGTCTTTCaacaaaatggaaagttaaGTTAACAGTCTTGTAAGTTCAAAT
TTCTATTCTCATCCTACCCCCTCCATCCAACAATCAAATCTTGGTATCTG
TTATGGTCTACCTTGATGGTACGTGTACGTCCCTGAGTTTGTTTTGCTGG
TCATGGCACATGGGCAATCTTAGTCGTGGAAAGGAACCACATTAGGTTTG
CGTACCCTTGCTTTGTTGGTTTCAAGTTGCAATTTTGTCTTTCATttctc
tgggggggggggcttctaACTATCCACCCATGTGCTCATATATCGGAAGT
CGGGCAGTTGTTTTCACCCCTTTTTTTTTCCCTTCCTTTTAATCCCTGGT
AACGTCCAATGACGTTGATACATTAGCCATTTCATTATTCTAGCCTACGA
ACCTTTGGAAGCCTCGGTTGATAGCCCTGGGTTTCACGTGTTATCATCTT
TTacctttttgtttttaactggGGTTTTTAACTATCCACCCATGGGTTCA
TTTGTCAAGTCGGGCAGTTGTTTTTCACCCCATTTGTTCTCCCTTCTTTA
ATCCCTGTTGATACCCTATGGTGTTGGTTGATACACTGGTAATTATTTCA
GCTTTATAAAATGCACCTTTGGGAAATCTACTGGTTGGATAGCCCTGGGT
TTATGTGTTATGTTTCACCTTTTGTTTTTAACTGGGTTTCTCACTATCCA
CCCAAAAGTTAGGCACTACTTACTTCAAGTTAGGCATTTGTTTTTCACCC
CTCTTTTTTCATGCTATCATTCCTGTTGACGTCCAATGACGTCATGATGC
ATAGTTAATTATTTAGCCTATGAACTTTTGGAGACCTACTGGTTGGATAG
CCCTGGGTTTCTGTGTTGTCatgttttacttttgtttttaactgGGTTTC
TAACTATCCACCCAAGAGTTCACCTGTAAGTTAGACAGTTGTTTTTCACC
CTTCTTTTCTTCATCCTATCACTCATGCCGACGTCCAATGACGTCATGAT
ACATTGGTCATTACTTAGCCTATGAATTTTTGGGAACCTGCTGATTAGAT
AGCCCTGGGTCTGTGCTGTCAtgtttacttttgttttagttGGGTTTCTA
ACTATCCACCCATGGGTTCACCTGTAAATTGCggagttttttctttttct
ttttttcacctGGCCTTTTTTGTTTGTTCTCATTCTATTATGCCTGGCGA
CGTCTAATGACGTCATGATACGCTGGTAATAATCTTAGCCTATGATCCCA
TGCAAACCTCGAAACCTACTGGTTGGGTAGCTCTTGGTCTTGTGTCGTCA
AGTTTTATTTTGTCTTAACTGGGTTTCTTACTATCCAACCTTGGGTTCAC
ATGTAAGTGGGAcagatatttttcttttctttcttgttttctCTTGCTAC
AATCCCTGGTGACGTCGAATGACGTCACGATTATGACGTCACGATTCAAT
GGTAATTATATTAGCAATGAACATCTGGGAATTTACTTGTTGAGATATgg
gctttgtttttattttttttttttttttacacctATTCTCTATACAGCTG
TAACATAAATTGGGTCTGGAGACTTCACAATAAGTAGATTGCCTTTTTGG
TTTCAACTACCCTGGGACTTGGTTCCCTTTCTTTCCCTGAAACATACCCC
ACAGAGATACAGTGCTTAGATTAAAAGTCATATGTCACCATCCTCAAATA
ATCTTATATTTAGCAGATCCCTTGCATTAAATGTCCAAACAATTTTACCC
TCAGATCTCAATTCAGACCATCCTGCCTTGCTCATAtggctgtcctcctt
acagtcctTCGACAGGCCGTCAACCCTACGGTCTTAGACACCTCCAATCA
TCCTCATTACAATCTAGACTAAAATCCATCATCCCTATCAGGACATGGGC
TCAGGTTATTCTCACCAGGATATAGGCTCAGGCCATCTTCATCAAATACA
TAGGCTCAGGCTATTCTCATTATGACCTATAGGGAAAACTTTAAAGCATT
AAGACTAAGACTGTCATCCTTTTAGTAAGAGTTAGCTTCCTAATGTGTAA
TGACTTCTTTTTGAGTTTGGCTGCTGATTTGGGGATGTATTGTGCGGGTA
GTTTTGGGGACGTTTTGGGGGTGTGGGTCCCTTCGGAACCCCATACTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNtaataataatgatatatttctggca
tttccaaaatttacatttggctcttcacctgaaaattctgtatataatat
atgtgcaatgtctagaaaaaaaatgtaaaataaccTGGTAGTATACTGAA
GAAAAATTGGGACCGTATGCGGACAAGCAGATAGGGACGAAGCGGTGGGC
TAGTATGACGAATAAAATGATTTGGATTGAGAAGTATAAGGGGTAAAATG
TGAATAGTGATAGAGCTAGACTAAAACCTAAACAAATCCGAGTATCTGAG
TATGCTAGCTGATGCCATCACAATGTGtgctattataaaaaattaaggaa
tatatttaaaaaaaaatactaacataATGTTATAAGCTAGACTAGACTAA
GGTTCAAGTACTATTGGTGGCTAGAGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaaaacttcatagAACTAGA
ATATAATAAAGTCATATATAtgcactgaagaaaatacaGACTAAGTAAAC
CTAAGAACAGATGGGCTAAATCTAAAATCAGAATGGAGACTAGGAAACCA
AGGCTACGAGTAGGGATATTAGAAGAATTTAAATCAGAATTAatttaaaa
ctaaaatggcgcGTGAATCAAATCTTCACCTGTTTACACTGTTAACAACA
TTTCGACCCTCCGACGTAAAAATTAATTAGAGCTAACTTTAGTTAGGTTA
GGTTAATTTTAAGGAAGACAAATCAACGCCCGCAATACACCCTTCCGCCA
TCATGCTACGCACTCTAGAAGCCATTGCTCAAATCCCAGTATCACTATTT
ATACGGGAGTGAAACCACGCTTAGTCTTTCTTATTCTTGTGTTTTCAATT
TCCCACCCTCCCTTCCCTTCCATACATGGAGTTAGGGAGGGACGTGGTAC
ATATATGCGCCAGttttttgcttgcttttttCTCTCTCATTTCAGGATGA
TTGGCGACGACGCCCACGTCCGACGACGAGGACGCACAAGCAGCAGCGCA
GCTAGTCCCAGCCAGGTTTTTTCCCCAAAAGGTGTTTTTAGTCCAGGGAC
TAGTCTTTTTTGTCTTCTTTTGGGATGTATCACGCAATATGCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006591XLOC_006591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011725-exon-sc0000132-1491911889:274948..278692TCONS_00011725-exon-sc0000132-1491911889:274948..278692Clytia hemisphaericaexon
TCONS_00011725-exon-sc0000132-1510915933:274948..278692TCONS_00011725-exon-sc0000132-1510915933:274948..278692Clytia hemisphaericaexon
TCONS_00011725-exon-sc0000132-1575043694:274948..278692TCONS_00011725-exon-sc0000132-1575043694:274948..278692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:274948..278692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.290286	0.175427	0.361145	0.194345	2.93137	2.00316	1.95454	2.73942	1.10998	3.13869	1.62188	1.08564	1.18924	0.813072	0.26589	0.187279	0.451946	0.332438	0.572173	0.422555	0.849926	0.996472	0.494692	0.662914	0.888696	1.90257	0.826101	0.602562	0.541124	0.505073
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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