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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011714 ID=TCONS_00011714|Name=TCONS_00011714|organism=Clytia hemisphaerica|type=transcript|length=1125bp
ttgttgtttttgaaaatgcAGTTATTATTTGGTCTTCTAAGGCGCGTCAT
GTCGAACTCAAATTCGTAAATACAGCAAGCAacctttttttatatatttt
ccatTCTTATACACTGATGCAGCCCTGTGAAtccaggtcggcattcggca
atGCCGACTTGAAAGCCGACGTAACTTGAGCTGAAGTCGGCTTTTATTTG
CCGACGTAATTTACACTNGCCTAGCTGTGACATCTCTCGAGTACATTTGA
TCCACAAAAACTGTTGCTTCTTCTCTGTTACGTAAGTTCTTGTTATAGTC
AATCACCGATTTCATATAGTACTGTGCTGATTTCCATGTATTAAATTGAA
CAAAGATAGGTGGAGGACTGTTACGATTTGCATTTGGTGTAACTTCGTTG
GTGTTTGGGCGATGTGCACGGTCAATATCATGTAGGACTTCATTGACACT
CAAATGATTACAGTCGATGTCACTCAGAAATTTTGCTAATTTGTCAGAAG
TCTTTGACCAAGACTCGTCGCAGGTGCCAGAGATACCACGAAAGATAAGG
GTTTTCCTCAGGTTGCGGTTAACCTGATCATCGAGAGTTCTGGATAGGTC
CTTATTTTTATTGACTTGACTGTTCAAGGCTGTCTCCAGTTGTTCAGTCC
TGAATTTTAAGGCTGTGATTTCATTTTGCATAGTCACCAGATCTATGCCA
TCAGGAATGATTTGCTCTAGCTTGTCCAGCCTGTCTTTGGTTTTGGTAAA
TTCTTTTCCAACATACTGTCTGAAGCCTGCAAGACTTTCTTCGATAGCTA
AGATTTTCGTCGTGAATTTTGAGGTTAGTTCATCGTATTTGGTCTCAATT
TTTGATACGAGATCTTTTGCTAGCTGTTCAAAGAGTTGCTTCATTTCACC
AGCCATCGTTTGGATTTCAGATTAATCAGATATTGCAAGATTTGTGTTAA
TAGTTGTAGTTCTAGTTCaggagcagaattttcgcgtcTACGCTACTCGG
CTACCATTTTGCGAAAAATAATCGAGcctcattccattctctttgtaaaa
cataaaacttaatAACACAATTATAGAGCAGCTGAATTTGTTAGTTCGTT
AATTTTCTTCCTATTTtgtctttgc Run BLAST on NCBI protein sequence of TCONS_00011714-protein >TCONS_00011714-protein ID=TCONS_00011714-protein|Name=TCONS_00011714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MAGEMKQLFEQLAKDLVSKIETKYDELTSKFTTKILAIEESLAGFRQYVG
KEFTKTKDRLDKLEQIIPDGIDLVTMQNEITALKFRTEQLETALNSQVNK
NKDLSRTLDDQVNRNLRKTLIFRGISGTCDESWSKTSDKLAKFLSDIDCN
HLSVNEVLHDIDRAHRPNTNEVTPNANRNSPPPIFVQFNTWKSAQYYMKS
VIDYNKNLRNREEATVFVDQMYSRDVTARXV Run BLAST on NCBI transcript from alignment at sc0000131:439461..440585 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011714 ID=TCONS_00011714|Name=TCONS_00011714|organism=Clytia hemisphaerica|type=transcript|length=1125bp|location=Sequence derived from alignment at sc0000131:439461..440585 (Clytia hemisphaerica)
gcaaagacaAAATAGGAAGAAAATTAACGAACTAACAAATTCAGCTGCTC
TATAATTGTGTTattaagttttatgttttacaaagagaatggaatgaggC
TCGATTATTTTTCGCAAAATGGTAGCCGAGTAGCGTAgacgcgaaaattc
tgctcctGAACTAGAACTACAACTATTAACACAAATCTTGCAATATCTGA
TTAATCTGAAATCCAAACGATGGCTGGTGAAATGAAGCAACTCTTTGAAC
AGCTAGCAAAAGATCTCGTATCAAAAATTGAGACCAAATACGATGAACTA
ACCTCAAAATTCACGACGAAAATCTTAGCTATCGAAGAAAGTCTTGCAGG
CTTCAGACAGTATGTTGGAAAAGAATTTACCAAAACCAAAGACAGGCTGG
ACAAGCTAGAGCAAATCATTCCTGATGGCATAGATCTGGTGACTATGCAA
AATGAAATCACAGCCTTAAAATTCAGGACTGAACAACTGGAGACAGCCTT
GAACAGTCAAGTCAATAAAAATAAGGACCTATCCAGAACTCTCGATGATC
AGGTTAACCGCAACCTGAGGAAAACCCTTATCTTTCGTGGTATCTCTGGC
ACCTGCGACGAGTCTTGGTCAAAGACTTCTGACAAATTAGCAAAATTTCT
GAGTGACATCGACTGTAATCATTTGAGTGTCAATGAAGTCCTACATGATA
TTGACCGTGCACATCGCCCAAACACCAACGAAGTTACACCAAATGCAAAT
CGTAACAGTCCTCCACCTATCTTTGTTCAATTTAATACATGGAAATCAGC
ACAGTACTATATGAAATCGGTGATTGACTATAACAAGAACTTACGTAACA
GAGAAGAAGCAACAGTTTTTGTGGATCAAATGTACTCGAGAGATGTCACA
GCTAGGCNAGTGTAAATTACGTCGGCAAATAAAAGCCGACTTCAGCTCAA
GTTACGTCGGCTTTCAAGTCGGCattgccgaatgccgacctggaTTCACA
GGGCTGCATCAGTGTATAAGAatggaaaatatataaaaaaaggtTGCTTG
CTGTATTTACGAATTTGAGTTCGACATGACGCGCCTTAGAAGACCAAATA
ATAACTgcattttcaaaaacaacaa Coding sequence (CDS) from alignment at sc0000131:439461..440585 >TCONS_00011714 ID=TCONS_00011714|Name=TCONS_00011714|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000131:439461..440585 (Clytia hemisphaerica)
ATGGCTGGTGAAATGAAGCAACTCTTTGAACAGCTAGCAAAAGATCTCGT
ATCAAAAATTGAGACCAAATACGATGAACTAACCTCAAAATTCACGACGA
AAATCTTAGCTATCGAAGAAAGTCTTGCAGGCTTCAGACAGTATGTTGGA
AAAGAATTTACCAAAACCAAAGACAGGCTGGACAAGCTAGAGCAAATCAT
TCCTGATGGCATAGATCTGGTGACTATGCAAAATGAAATCACAGCCTTAA
AATTCAGGACTGAACAACTGGAGACAGCCTTGAACAGTCAAGTCAATAAA
AATAAGGACCTATCCAGAACTCTCGATGATCAGGTTAACCGCAACCTGAG
GAAAACCCTTATCTTTCGTGGTATCTCTGGCACCTGCGACGAGTCTTGGT
CAAAGACTTCTGACAAATTAGCAAAATTTCTGAGTGACATCGACTGTAAT
CATTTGAGTGTCAATGAAGTCCTACATGATATTGACCGTGCACATCGCCC
AAACACCAACGAAGTTACACCAAATGCAAATCGTAACAGTCCTCCACCTA
TCTTTGTTCAATTTAATACATGGAAATCAGCACAGTACTATATGAAATCG
GTGATTGACTATAACAAGAACTTACGTAACAGAGAAGAAGCAACAGTTTT
TGTGGATCAAATGTACTCGAGAGATGTCACAGCTAGGCNAGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011714-exon-sc0000131-1491911889:439461..440585 | TCONS_00011714-exon-sc0000131-1491911889:439461..440585 | Clytia hemisphaerica | exon |
| TCONS_00011714-exon-sc0000131-1510915933:439461..440585 | TCONS_00011714-exon-sc0000131-1510915933:439461..440585 | Clytia hemisphaerica | exon |
| TCONS_00011714-exon-sc0000131-1575043694:439461..440585 | TCONS_00011714-exon-sc0000131-1575043694:439461..440585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:439461..440585 . |
Blast
The following BLAST results are available for this feature:
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