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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011711 ID=TCONS_00011711|Name=TCONS_00011711|organism=Clytia hemisphaerica|type=transcript|length=1926bp
AAGATATTGCTAAATCGATTATATTGAAATGGAAGgatatatataatatt
tcatttcttggtaaattactcaaaaaacaTAGATTTACAATGTTTGTAAA
TGTTATAATGATATTCTTAAGCATATCTCAATTCATGGTACATGCATCAG
AAAAAGCgcttatttttcaaaagcttatcACATCATTGGAAGAAGATTTC
ACACAAACTTGGGTATATAAAGACATGTATAGTCATCCAAATCAATTAGG
AGTAACAGAAGAGTTGTTTATGAANGGGTATATAAAGACATGTATAGCCA
TCCAAATCAATTAGGAGTAACAGAAGAGTTGTTTATGAAATCTATTGCAA
ACAATGGAAACAAGCGTAGATTACAGAAAGTGTTGATCAAAGCTTTAGAA
GGTGATGCCTTAGATCTGGTCATCCTTGGCGGTTCAATATCCAGAGGTGC
ACCTTTCTCTGAGCGAGGACTTGATTTCCGGATTTATTTTCATGCCATTG
TCAACTGGTGGAATCGTGTATTCAGTCAAATTTCTGGATCTAAATTAGAA
GCGAAAAGTATTTCGATAGGCGGTATAGGGACTGATTATTACTCTTACTG
TTTGACACCTCATTTACCTGAAGACACACGCCCAACCATCTTCTTATGGG
AACTCGCAGCGAACGATCGAGGGCGTTACGATGATAAACAGTTCCCAAGA
GCTTACCCACTAGAACAGTTGACACGGAACATTTTGCTGCGACCAAGTAA
CCCACTTTTAATGTTTGCTAATTTTTTCAGAGGTAACGATTATCTCCAGA
AGAaatgtttaaattttgaagACGAAGGTGGTCAAAAGATTGCAGAGATA
TATCATCTTACCTCCATAAGTTGGCGTGATTTTGTGTGTGATAATCTGAA
TGCTGGCCAAGAAGGGTTCCGTATGAAAGACTTATTTGCAGATGACAACC
TACACCCAAGCCTGAAAGGACACGCCCAAATGGCTTACCTTCTTATAAAT
TACCTGCGTTTAGAATtcctcaatgttcttaaaaacacTGCTCGAATGTC
ATCGTTATCAGAATTCAAAGATGAGATGTGGAGTCGAGGTGATATGTCCA
TACCAGGAATTATATACCACGAAACATCAGCGAAATCTCCACAatgcaaa
acttatttttataaCGATGGGAAGGAGCCAAATAACACACTACCTGTAGA
AATCattgataaaagtgattttcATTACAATATTTATAAGAAATTCAAAT
TAAGAGGTGATCAATTAGGTGGTCTACAAACCAAGTTTAGTGAACAATTA
CTTCAGTTTGCAGTGACAATCGATAGACCAATATGTAGACTTGTAATAGT
GAGTCATAGTGGTACTGGAACAGCCAAGTGTTGGATAGATGCGCATGCGT
CCGTTGATGTTGATACAATGAAATACAGCATGGGAACTAAGATGGACATT
ATTGCAACCAATTTAAGACCAGGCAAATATCACTTGAATATTCTGTCAAT
GAAGGGTGGGTTTGCCATCAGTGGAATTGCTATTATTTAACCTGCTGAGA
AAGCGAGACAAATAATAAGTAAAGGTGTTGACTGTTATTCAACCACACAC
ATGGACACATCTACATACCTCTTAATTAAAGTTTActtcatatttttcaa
tattgtggatgaaaatgaatgaaaaaaaattgagttaaaaaatTCAGCTA
CAGGGTGTCGTTAAAAAATGAGATCGAATTTGATGtaaagaatttttcat
aatttaggATACCTTTCTTCGACCAATATGGtctcaattttcttaaaaat
aacaTTGAATAGATGATCAAAATGATCCTAATGTAGAtgctaatacacgt
ttttttttataaggaacacgtttgtAAGGAACtcaaggctgaaaatggtc
caaaaattaaggaattgttaaggaac Run BLAST on NCBI protein sequence of TCONS_00011711-protein >TCONS_00011711-protein ID=TCONS_00011711-protein|Name=TCONS_00011711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
MYSHPNQLGVTEELFMKSIANNGNKRRLQKVLIKALEGDALDLVILGGSI
SRGAPFSERGLDFRIYFHAIVNWWNRVFSQISGSKLEAKSISIGGIGTDY
YSYCLTPHLPEDTRPTIFLWELAANDRGRYDDKQFPRAYPLEQLTRNILL
RPSNPLLMFANFFRGNDYLQKKCLNFEDEGGQKIAEIYHLTSISWRDFVC
DNLNAGQEGFRMKDLFADDNLHPSLKGHAQMAYLLINYLRLEFLNVLKNT
ARMSSLSEFKDEMWSRGDMSIPGIIYHETSAKSPQCKTYFYNDGKEPNNT
LPVEIIDKSDFHYNIYKKFKLRGDQLGGLQTKFSEQLLQFAVTIDRPICR
LVIVSHSGTGTAKCWIDAHASVDVDTMKYSMGTKMDIIATNLRPGKYHLN
ILSMKGGFAISGIAII Run BLAST on NCBI transcript from alignment at sc0000131:353448..355373 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011711 ID=TCONS_00011711|Name=TCONS_00011711|organism=Clytia hemisphaerica|type=transcript|length=1926bp|location=Sequence derived from alignment at sc0000131:353448..355373 (Clytia hemisphaerica)
gttccttaacaattccttaatttttggaccattttcagccttgaGTTCCT
TacaaacgtgttccttataaaaaaaaacgtgtattagcaTCTACATTAGG
ATCATTTTGATCATCTATTCAAtgttatttttaagaaaattgagaCCATA
TTGGTCGAAGAAAGGTATcctaaattatgaaaaattctttaCATCAAATT
CGATCTCATTTTTTAACGACACCCTGTAGCTGAattttttaactcaattt
tttttcattcattttcatccacaatattgaaaaatatgaagTAAACTTTA
ATTAAGAGGTATGTAGATGTGTCCATGTGTGTGGTTGAATAACAGTCAAC
ACCTTTACTTATTATTTGTCTCGCTTTCTCAGCAGGTTAAATAATAGCAA
TTCCACTGATGGCAAACCCACCCTTCATTGACAGAATATTCAAGTGATAT
TTGCCTGGTCTTAAATTGGTTGCAATAATGTCCATCTTAGTTCCCATGCT
GTATTTCATTGTATCAACATCAACGGACGCATGCGCATCTATCCAACACT
TGGCTGTTCCAGTACCACTATGACTCACTATTACAAGTCTACATATTGGT
CTATCGATTGTCACTGCAAACTGAAGTAATTGTTCACTAAACTTGGTTTG
TAGACCACCTAATTGATCACCTCTTAATTTGAATTTCTTATAAATATTGT
AATgaaaatcacttttatcaatGATTTCTACAGGTAGTGTGTTATTTGGC
TCCTTCCCATCGttataaaaataagttttgcatTGTGGAGATTTCGCTGA
TGTTTCGTGGTATATAATTCCTGGTATGGACATATCACCTCGACTCCACA
TCTCATCTTTGAATTCTGATAACGATGACATTCGAGCAgtgtttttaaga
acattgaggaATTCTAAACGCAGGTAATTTATAAGAAGGTAAGCCATTTG
GGCGTGTCCTTTCAGGCTTGGGTGTAGGTTGTCATCTGCAAATAAGTCTT
TCATACGGAACCCTTCTTGGCCAGCATTCAGATTATCACACACAAAATCA
CGCCAACTTATGGAGGTAAGATGATATATCTCTGCAATCTTTTGACCACC
TTCGTcttcaaaatttaaacattTCTTCTGGAGATAATCGTTACCTCTGA
AAAAATTAGCAAACATTAAAAGTGGGTTACTTGGTCGCAGCAAAATGTTC
CGTGTCAACTGTTCTAGTGGGTAAGCTCTTGGGAACTGTTTATCATCGTA
ACGCCCTCGATCGTTCGCTGCGAGTTCCCATAAGAAGATGGTTGGGCGTG
TGTCTTCAGGTAAATGAGGTGTCAAACAGTAAGAGTAATAATCAGTCCCT
ATACCGCCTATCGAAATACTTTTCGCTTCTAATTTAGATCCAGAAATTTG
ACTGAATACACGATTCCACCAGTTGACAATGGCATGAAAATAAATCCGGA
AATCAAGTCCTCGCTCAGAGAAAGGTGCACCTCTGGATATTGAACCGCCA
AGGATGACCAGATCTAAGGCATCACCTTCTAAAGCTTTGATCAACACTTT
CTGTAATCTACGCTTGTTTCCATTGTTTGCAATAGATTTCATAAACAACT
CTTCTGTTACTCCTAATTGATTTGGATGGCTATACATGTCTTTATATACC
CNTTCATAAACAACTCTTCTGTTACTCCTAATTGATTTGGATGACTATAC
ATGTCTTTATATACCCAAGTTTGTGTGAAATCTTCTTCCAATGATGTgat
aagcttttgaaaaataagcGCTTTTTCTGATGCATGTACCATGAATTGAG
ATATGCTTAAGAATATCATTATAACATTTACAAACATTGTAAATCTAtgt
tttttgagtaatttaccaagaaatgaaatattatatatatcCTTCCATTT
CAATATAATCGATTTAGCAATATCTT Coding sequence (CDS) from alignment at sc0000131:353448..355373 >TCONS_00011711 ID=TCONS_00011711|Name=TCONS_00011711|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at sc0000131:353448..355373 (Clytia hemisphaerica)
TTAAATAATAGCAATTCCACTGATGGCAAACCCACCCTTCATTGACAGAA
TATTCAAGTGATATTTGCCTGGTCTTAAATTGGTTGCAATAATGTCCATC
TTAGTTCCCATGCTGTATTTCATTGTATCAACATCAACGGACGCATGCGC
ATCTATCCAACACTTGGCTGTTCCAGTACCACTATGACTCACTATTACAA
GTCTACATATTGGTCTATCGATTGTCACTGCAAACTGAAGTAATTGTTCA
CTAAACTTGGTTTGTAGACCACCTAATTGATCACCTCTTAATTTGAATTT
CTTATAAATATTGTAATgaaaatcacttttatcaatGATTTCTACAGGTA
GTGTGTTATTTGGCTCCTTCCCATCGttataaaaataagttttgcatTGT
GGAGATTTCGCTGATGTTTCGTGGTATATAATTCCTGGTATGGACATATC
ACCTCGACTCCACATCTCATCTTTGAATTCTGATAACGATGACATTCGAG
CAgtgtttttaagaacattgaggaATTCTAAACGCAGGTAATTTATAAGA
AGGTAAGCCATTTGGGCGTGTCCTTTCAGGCTTGGGTGTAGGTTGTCATC
TGCAAATAAGTCTTTCATACGGAACCCTTCTTGGCCAGCATTCAGATTAT
CACACACAAAATCACGCCAACTTATGGAGGTAAGATGATATATCTCTGCA
ATCTTTTGACCACCTTCGTcttcaaaatttaaacattTCTTCTGGAGATA
ATCGTTACCTCTGAAAAAATTAGCAAACATTAAAAGTGGGTTACTTGGTC
GCAGCAAAATGTTCCGTGTCAACTGTTCTAGTGGGTAAGCTCTTGGGAAC
TGTTTATCATCGTAACGCCCTCGATCGTTCGCTGCGAGTTCCCATAAGAA
GATGGTTGGGCGTGTGTCTTCAGGTAAATGAGGTGTCAAACAGTAAGAGT
AATAATCAGTCCCTATACCGCCTATCGAAATACTTTTCGCTTCTAATTTA
GATCCAGAAATTTGACTGAATACACGATTCCACCAGTTGACAATGGCATG
AAAATAAATCCGGAAATCAAGTCCTCGCTCAGAGAAAGGTGCACCTCTGG
ATATTGAACCGCCAAGGATGACCAGATCTAAGGCATCACCTTCTAAAGCT
TTGATCAACACTTTCTGTAATCTACGCTTGTTTCCATTGTTTGCAATAGA
TTTCATAAACAACTCTTCTGTTACTCCTAATTGATTTGGATGGCTATACA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011711-exon-sc0000131-1491911889:353448..355373 | TCONS_00011711-exon-sc0000131-1491911889:353448..355373 | Clytia hemisphaerica | exon |
| TCONS_00011711-exon-sc0000131-1510915933:353448..355373 | TCONS_00011711-exon-sc0000131-1510915933:353448..355373 | Clytia hemisphaerica | exon |
| TCONS_00011711-exon-sc0000131-1575043694:353448..355373 | TCONS_00011711-exon-sc0000131-1575043694:353448..355373 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:353448..355373 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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