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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011710 ID=TCONS_00011710|Name=TCONS_00011710|organism=Clytia hemisphaerica|type=transcript|length=994bp
CAGTGATATTTCGTATGTCAGAGGGAATACTGTTGAAGAGTTTTGGACCC
TGTACAGCTAAGCGCTCACAAATAAATTTGCGAAAGCTACTTCGTTCGAT
TGTTCGTAGTTGGCATTTTCGACCATGACGGCTTGTAGTTGAAGACGAAA
AACCACCTTTTACAGTGCCATCTCCTTCAGTGTGGCTAAATTTTGGTACT
ATACCCTCTAGTATCGACCAAATATAAATAATTCTGTATCTCTCCATCCT
CCTTTGTAGAGAatacattttcaacattttcaattgtTCCCAATAATCGA
AAACACTAAggcctttgattttattgaagaagTTCTTTTGTACGGGTTCA
ATCTGTTCAATTTGGTGGATGCTGTTTGGTGACCaaagctgagaacagta
gtcgAGGTGAGGGAGAACTAAGGATTTCCATAACGTTATCATAACATCAC
TGCTTCTGTTGTTGAATGTTCTCAAAATCCAGCTAGAAATATCCTTAGCT
TTTGCTATCATTTTATTGATGTGATCAGTGAATGAGCAGTCACTACTCAT
CCACAGCCCctttatatcaaaacatattaagaggggatgcgtgccaggtt
acaaaaacgtcaaaattccAGTCTTTccaagggtcgattttcgaactaAG
ACAAATTGTGCGGGTCACGTGTTTTCagtgttttggatgggaaataatta
GCTTCATTTCTCATCCAGGAGTTTTTATCTAGCCCCTTCGGATGGAGCTC
TGAAATCAATGCTTGCAAACctaagcttgtaacagacgggTGTTCACCAA
TTTTGGCAAGCTCTTTGTAATCTTTCAAAGAATGATTCAAaactaaaata
gaaatacaaaagaaaaataactaacttgaacaaaaacaaaagtgtgAAAT
TGACACGCCTACTTGTGGAAAATCTAAGTTCTAGCGATAATGTATAATAT
ATACAAAAGAAAACTCATgttgaaagaaaattgaatgcCTGAGT Run BLAST on NCBI protein sequence of TCONS_00011710-protein >TCONS_00011710-protein ID=TCONS_00011710-protein|Name=TCONS_00011710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MSSDCSFTDHINKMIAKAKDISSWILRTFNNRSSDVMITLWKSLVLPHLD
YCSQLWSPNSIHQIEQIEPVQKNFFNKIKGLSVFDYWEQLKMLKMYSLQR
RMERYRIIYIWSILEGIVPKFSHTEGDGTVKGGFSSSTTSRHGRKCQLRT
IERSSFRKFICERLAVQGPKLFNSIPSDIRNIT Run BLAST on NCBI transcript from alignment at sc0000131:344011..345004 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011710 ID=TCONS_00011710|Name=TCONS_00011710|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at sc0000131:344011..345004 (Clytia hemisphaerica)
ACTCAGgcattcaattttctttcaacATGAGTTTTCTTTTGTATATATTA
TACATTATCGCTAGAACTTAGATTTTCCACAAGTAGGCGTGTCAATTTca
cacttttgtttttgttcaagttagttatttttcttttgtatttctatttt
agttTTGAATCATTCTTTGAAAGATTACAAAGAGCTTGCCAAAATTGGTG
AACAcccgtctgttacaagcttagGTTTGCAAGCATTGATTTCAGAGCTC
CATCCGAAGGGGCTAGATAAAAACTCCTGGATGAGAAATGAAGCtaatta
tttcccatccaaaacactGAAAACACGTGACCCGCACAATTTGTCTtagt
tcgaaaatcgacccttggAAAGACTggaattttgacgtttttgtaacctg
gcacgcatcccctcttaatatgttttgatataaagGGGCTGTGGATGAGT
AGTGACTGCTCATTCACTGATCACATCAATAAAATGATAGCAAAAGCTAA
GGATATTTCTAGCTGGATTTTGAGAACATTCAACAACAGAAGCAGTGATG
TTATGATAACGTTATGGAAATCCTTAGTTCTCCCTCACCTcgactactgt
tctcagctttGGTCACCAAACAGCATCCACCAAATTGAACAGATTGAACC
CGTACAAAAGAActtcttcaataaaatcaaaggccTTAGTGTTTTCGATT
ATTGGGAacaattgaaaatgttgaaaatgtatTCTCTACAAAGGAGGATG
GAGAGATACAGAATTATTTATATTTGGTCGATACTAGAGGGTATAGTACC
AAAATTTAGCCACACTGAAGGAGATGGCACTGTAAAAGGTGGTTTTTCGT
CTTCAACTACAAGCCGTCATGGTCGAAAATGCCAACTACGAACAATCGAA
CGAAGTAGCTTTCGCAAATTTATTTGTGAGCGCTTAGCTGTACAGGGTCC
AAAACTCTTCAACAGTATTCCCTCTGACATACGAAATATCACTG Coding sequence (CDS) from alignment at sc0000131:344011..345004 >TCONS_00011710 ID=TCONS_00011710|Name=TCONS_00011710|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0000131:344011..345004 (Clytia hemisphaerica)
ATGAGTAGTGACTGCTCATTCACTGATCACATCAATAAAATGATAGCAAA
AGCTAAGGATATTTCTAGCTGGATTTTGAGAACATTCAACAACAGAAGCA
GTGATGTTATGATAACGTTATGGAAATCCTTAGTTCTCCCTCACCTcgac
tactgttctcagctttGGTCACCAAACAGCATCCACCAAATTGAACAGAT
TGAACCCGTACAAAAGAActtcttcaataaaatcaaaggccTTAGTGTTT
TCGATTATTGGGAacaattgaaaatgttgaaaatgtatTCTCTACAAAGG
AGGATGGAGAGATACAGAATTATTTATATTTGGTCGATACTAGAGGGTAT
AGTACCAAAATTTAGCCACACTGAAGGAGATGGCACTGTAAAAGGTGGTT
TTTCGTCTTCAACTACAAGCCGTCATGGTCGAAAATGCCAACTACGAACA
ATCGAACGAAGTAGCTTTCGCAAATTTATTTGTGAGCGCTTAGCTGTACA
GGGTCCAAAACTCTTCAACAGTATTCCCTCTGACATACGAAATATCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011710-exon-sc0000131-1491911889:344011..345004 | TCONS_00011710-exon-sc0000131-1491911889:344011..345004 | Clytia hemisphaerica | exon |
| TCONS_00011710-exon-sc0000131-1510915933:344011..345004 | TCONS_00011710-exon-sc0000131-1510915933:344011..345004 | Clytia hemisphaerica | exon |
| TCONS_00011710-exon-sc0000131-1575043694:344011..345004 | TCONS_00011710-exon-sc0000131-1575043694:344011..345004 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:344011..345004 . |
Blast
The following BLAST results are available for this feature:
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