TCONS_00011706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011706
Unique NameTCONS_00011706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011706 ID=TCONS_00011706|Name=TCONS_00011706|organism=Clytia hemisphaerica|type=transcript|length=742bp
cgctaagaacagaccaccatatccagctggaacgtgccttcagaacagat
attttgaagtcccccttcggtggatgctttcgaataatagtaataataat
aagACCGAAGTCAAAGACCCACCATCGAAAGAAAGTATCGAACAGTTCTG
GAAACCGATGTACGAAACACGGAAGTGCTACAACAAAGAATCCGTCTGGG
CTACAACAGTATGAAGAGTCTATCGATGCCGCGCAGTCCGAGTACAGTGA
TATCACGCCAGATGAAGTCATGTCTGCAACAAACAAATTCGCCAATTGGA
AAAGCCCAGGAATTgataaaatccaaaatttctggTGGTGCAACCTTCCA
AATATTCATGCCAAGTTTGCTGAGCTTTCCAACAACACAATTGTCGACCC
AACAACGTGCCCTAAATGGTTGACCACCGGGAGAACCACCTAAATATCAA
AGAAACCACCAACCCAGAACCCATCTAAATATCGACCAATTACCTGTCTA
CCCATCATGTATAAAATCATCTCAAGTATCATAACAACCCGTATGAATCA
CCACATCACGGCTAACAACTTGATACCTGAAGAGCAGAAAGGCAACGCCA
GCAATACCTTCGGCACAATCGACCAACTGATAATCAACAAGATGATTATG
GAGAGCGCCAAAGTCAAGAAGCGTAATATATCTACGGCGTGGATCGATTA
TCGAAAAGCGTACGACTCCGTCCCGCATGATTGGATCATCAA
Run BLAST on NCBI

protein sequence of TCONS_00011706-protein

>TCONS_00011706-protein ID=TCONS_00011706-protein|Name=TCONS_00011706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
LRTDHHIQLERAFRTDILKSPFGGCFRIIVIIIRPKSKTHHRKKVSNSSG
NRCTKHGSATTKNPSGLQQYEESIDAAQSEYSDITPDEVMSATNKFANWK
SPGIDKIQNFWWCNLPNIHAKFAELSNNTIVDPTTCPKWLTTGRTT
Run BLAST on NCBI

transcript from alignment at sc0000131:240040..240781

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011706 ID=TCONS_00011706|Name=TCONS_00011706|organism=Clytia hemisphaerica|type=transcript|length=742bp|location=Sequence derived from alignment at sc0000131:240040..240781 (Clytia hemisphaerica)
TTGATGATCCAATCATGCGGGACGGAGTCGTACGCTTTTCGATAATCGAT
CCACGCCGTAGATATATTACGCTTCTTGACTTTGGCGCTCTCCATAATCA
TCTTGTTGATTATCAGTTGGTCGATTGTGCCGAAGGTATTGCTGGCGTTG
CCTTTCTGCTCTTCAGGTATCAAGTTGTTAGCCGTGATGTGGTGATTCAT
ACGGGTTGTTATGATACTTGAGATGATTTTATACATGATGGGTAGACAGG
TAATTGGTCGATATTTAGATGGGTTCTGGGTTGGTGGTTTCTTTGATATT
TAGGTGGTTCTCCCGGTGGTCAACCATTTAGGGCACGTTGTTGGGTCGAC
AATTGTGTTGTTGGAAAGCTCAGCAAACTTGGCATGAATATTTGGAAGGT
TGCACCAccagaaattttggattttatcAATTCCTGGGCTTTTCCAATTG
GCGAATTTGTTTGTTGCAGACATGACTTCATCTGGCGTGATATCACTGTA
CTCGGACTGCGCGGCATCGATAGACTCTTCATACTGTTGTAGCCCAGACG
GATTCTTTGTTGTAGCACTTCCGTGTTTCGTACATCGGTTTCCAGAACTG
TTCGATACTTTCTTTCGATGGTGGGTCTTTGACTTCGGTcttattattat
tactattattcgaaagcatccaccgaagggggacttcaaaatatctgttc
tgaaggcacgttccagctggatatggtggtctgttcttagcg

Coding sequence (CDS) from alignment at sc0000131:240040..240781

>TCONS_00011706 ID=TCONS_00011706|Name=TCONS_00011706|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0000131:240040..240781 (Clytia hemisphaerica)
TTAGGTGGTTCTCCCGGTGGTCAACCATTTAGGGCACGTTGTTGGGTCGA
CAATTGTGTTGTTGGAAAGCTCAGCAAACTTGGCATGAATATTTGGAAGG
TTGCACCAccagaaattttggattttatcAATTCCTGGGCTTTTCCAATT
GGCGAATTTGTTTGTTGCAGACATGACTTCATCTGGCGTGATATCACTGT
ACTCGGACTGCGCGGCATCGATAGACTCTTCATACTGTTGTAGCCCAGAC
GGATTCTTTGTTGTAGCACTTCCGTGTTTCGTACATCGGTTTCCAGAACT
GTTCGATACTTTCTTTCGATGGTGGGTCTTTGACTTCGGTcttattatta
ttactattattcgaaagcatccaccgaagggggacttcaaaatatctgtt
ctgaaggcacgttccagctggatatggtggtctgttcttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006576XLOC_006576Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011706-proteinTCONS_00011706-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011706-exon-sc0000131-1491911889:240040..240781TCONS_00011706-exon-sc0000131-1491911889:240040..240781Clytia hemisphaericaexon
TCONS_00011706-exon-sc0000131-1510915933:240040..240781TCONS_00011706-exon-sc0000131-1510915933:240040..240781Clytia hemisphaericaexon
TCONS_00011706-exon-sc0000131-1575043694:240040..240781TCONS_00011706-exon-sc0000131-1575043694:240040..240781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:240040..240781 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0752559	0.392423	0.575396	0.0737813	0.451379	0.213508	0.428801	0.240471	0.269638	0.139349	0.877588	0.310854	0.43109	0.460821	0.0760328	0.366461	0.200041	0.154024	0.21268	0.521235	0	0.0943171	0.0766448	0.139354	5.36697	3.13634	0.0914416	0.196868	0.222047	0.302201
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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