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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011697 ID=TCONS_00011697|Name=TCONS_00011697|organism=Clytia hemisphaerica|type=transcript|length=1222bp
CTGAAAACCTATCAACTTATAACTATATTATGCttacataagcaaaaaat
gtttttcttttcctgtttCTGTCCAATCTtactccacatccgtgtcaatt
caatgtgaaaaagcttgaatGTGAATTAGCCACATTCCGTAAAAGGGCCT
GGTAACTAGCTGTAGGGACTTTTTCGATGATATGCGCCATCTTGCGAAAA
TTCCAAACCAAAACAAGCCAAGATTGAGAGGAAAAGTTATAGAGAAGACT
GAAACTTTTAGCAGATTGGAGTTGTTTTCACAATATCCACAATGAAAAGT
AACTGCAGTTCCAGCTTGTGTTTTTGTGAAAGACTTTAATGGTAACCCTA
TTAAATTCCATCGTTTGCCAAATGCCAAAGGATCCTGAATTGTCAAAACA
GAAGGATTTGGAAATTTGGTGTCATATGTTATGACCATTGGAGTATGTTT
CAGATCATCTTCTAATGATTTACCAGATGTTATAGTTCCTGAATCCCAAT
ACAAACTGATCAAGAAAATTAAGTATGAACGAGTAAAGAAGCGTTGGGTT
TTTTATCTGGAATTCTATCAGTTTCAAGAACAGTGCTATGGAGAAAATGA
GCAAGCAGCAGTACATAATCGAAAccccaacagcaacaacaaccaGGAAG
TTAACCATCGggagatttcttttgatagttgctcacttagctttgttttg
gttttggtctTGGCTTTGTTGAACACTTTATTACAGCTCGATGTTTAATA
GCAAATAGGATACACGAAGGGtacaaacacatcaaaggtCGTGCTTCAAG
GATGAGGTTGCAGAAGACATTATTTATGTGCTGGCTTGAAAATTAATGCC
AATAatggatgtttttatagaacTGAATTCTGAAGTTCATAAAANNNNNN
NNNNNNNNNNNAAACAATATGAGAGTCCTCAAGATTATTgcagtcaatca
gtcaatcacGGTATGAATTCTCCACCCCTAGTTTTGAATTCAGGATGTGT
ATTATATTATTTTCATTTGCGTAGTCATAtaattttgcatacaattcaat
ccCACTGTGGACTGAGACAGCGAGATTGAGCCTATGGACTCTGATCAAAT
TACAACATGGGATTATACagttaaatgacatttttttgtaTGGAACTCTT
GGAATTCaagattgcaaaataaatttcaaaacagacaaaatatttttttg
tatcaacAAGAATTTCTATTTN Run BLAST on NCBI protein sequence of TCONS_00011697-protein >TCONS_00011697-protein ID=TCONS_00011697-protein|Name=TCONS_00011697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MTIGVCFRSSSNDLPDVIVPESQYKLIKKIKYERVKKRWVFYLEFYQFQE
QCYGENEQAAVHNRNPNSNNNQEVNHREISFDSCSLSFVLVLVLALLNTL
LQLDV Run BLAST on NCBI transcript from alignment at sc0000131:103663..104884 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011697 ID=TCONS_00011697|Name=TCONS_00011697|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at sc0000131:103663..104884 (Clytia hemisphaerica)
NAAATAGAAATTCTTgttgatacaaaaaaatattttgtctgttttgaaat
ttattttgcaatcttGAATTCCAAGAGTTCCAtacaaaaaaatgtcattt
aactGTATAATCCCATGTTGTAATTTGATCAGAGTCCATAGGCTCAATCT
CGCTGTCTCAGTCCACAGTGggattgaattgtatgcaaaattaTATGACT
ACGCAAATGAAAATAATATAATACACATCCTGAATTCAAAACTAGGGGTG
GAGAATTCATACCgtgattgactgattgactgcAATAATCTTGAGGACTC
TCATATTGTTTNNNNNNNNNNNNNNNNNTTTTATGAACTTCAGAATTCAg
ttctataaaaacatccatTATTGGCATTAATTTTCAAGCCAGCACATAAA
TAATGTCTTCTGCAACCTCATCCTTGAAGCACGacctttgatgtgtttgt
aCCCTTCGTGTATCCTATTTGCTATTAAACATCGAGCTGTAATAAAGTGT
TCAACAAAGCCAagaccaaaaccaaaacaaagctaagtgagcaactatca
aaagaaatctccCGATGGTTAACTTCCtggttgttgttgctgttggggTT
TCGATTATGTACTGCTGCTTGCTCATTTTCTCCATAGCACTGTTCTTGAA
ACTGATAGAATTCCAGATAAAAAACCCAACGCTTCTTTACTCGTTCATAC
TTAATTTTCTTGATCAGTTTGTATTGGGATTCAGGAACTATAACATCTGG
TAAATCATTAGAAGATGATCTGAAACATACTCCAATGGTCATAACATATG
ACACCAAATTTCCAAATCCTTCTGTTTTGACAATTCAGGATCCTTTGGCA
TTTGGCAAACGATGGAATTTAATAGGGTTACCATTAAAGTCTTTCACAAA
AACACAAGCTGGAACTGCAGTTACTTTTCATTGTGGATATTGTGAAAACA
ACTCCAATCTGCTAAAAGTTTCAGTCTTCTCTATAACTTTTCCTCTCAAT
CTTGGCTTGTTTTGGTTTGGAATTTTCGCAAGATGGCGCATATCATCGAA
AAAGTCCCTACAGCTAGTTACCAGGCCCTTTTACGGAATGTGGCTAATTC
ACattcaagctttttcacattgaattgacacggatgtggagtaAGATTGG
ACAGaaacaggaaaagaaaaacattttttgcttatgtaaGCATAATATAG
TTATAAGTTGATAGGTTTTCAG Coding sequence (CDS) from alignment at sc0000131:103663..104884 >TCONS_00011697 ID=TCONS_00011697|Name=TCONS_00011697|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000131:103663..104884 (Clytia hemisphaerica)
TTAAACATCGAGCTGTAATAAAGTGTTCAACAAAGCCAagaccaaaacca
aaacaaagctaagtgagcaactatcaaaagaaatctccCGATGGTTAACT
TCCtggttgttgttgctgttggggTTTCGATTATGTACTGCTGCTTGCTC
ATTTTCTCCATAGCACTGTTCTTGAAACTGATAGAATTCCAGATAAAAAA
CCCAACGCTTCTTTACTCGTTCATACTTAATTTTCTTGATCAGTTTGTAT
TGGGATTCAGGAACTATAACATCTGGTAAATCATTAGAAGATGATCTGAA
ACATACTCCAATGGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011697-exon-sc0000131-1491911889:103663..104884 | TCONS_00011697-exon-sc0000131-1491911889:103663..104884 | Clytia hemisphaerica | exon |
| TCONS_00011697-exon-sc0000131-1510915933:103663..104884 | TCONS_00011697-exon-sc0000131-1510915933:103663..104884 | Clytia hemisphaerica | exon |
| TCONS_00011697-exon-sc0000131-1575043694:103663..104884 | TCONS_00011697-exon-sc0000131-1575043694:103663..104884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:103663..104884 . |
Blast
The following BLAST results are available for this feature:
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