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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011690 ID=TCONS_00011690|Name=TCONS_00011690|organism=Clytia hemisphaerica|type=transcript|length=1606bp
GTGTAGCAGAAATGATAAAGtcacaaaaatacaaagaatggcAAACAAAC
CGGGAAATCTTTCGTTGGATAACAACTGCAGCTATTTTTCTGTACGGTCT
CGAAAGTCAAGGATTTTTGGTGACAGTTTTGTTTTACCTCATGGAGAGAT
ATGATCTATCGAAAGATGACGTCAGCTTTTATCTCAGTTTAACACAATTT
TTGAGTTGTTCTGTAGAAATGGTCAGTGGTTTAGGCCTTGGCAGATATGC
AGATCAAacaagaaatttgagaaaagttGTTTTGCTAAATTTGGCAGCAA
CTTTTGTGTTGAACCTGATTTACACTCTTCCCGTTCCACTCTGGGTAATT
ATCATTGCACGAACACTAACAGGTGTTTCGGAGTCATTACAAACTGCTGT
TGTCGgtGAATTTCGGCGCATTTACATCGATGATAAAAGCAAATTGGTTT
CTGTGCTAAGCTGGTATGAAATCGCCTTGCAAactggaagaaattttggt
gctATTCTATTACTCATTTTATCAAGTGTTTCCTTCAAAGTTGGCAATTG
GAAAATAGATAAGTtaaatattctaaattttttgttgTCGATTTCTGGAC
TGTTACTGCTCATTATatctttattcaaaataaaagatGTATCCAAGGAC
TTTGACCGTTTAAAATTAACAAATGATGATGTGAATCACACTGTAGTATC
AGGTGAACAAACCCAGGGTAAATCAgatttaaatgaaattaacaaaactt
CAACACCAGCAGTAAATGACGATCAACCATCTTTAATGAAATGGCACGAG
GTTTTTACTTTCGATATTATAACTATCATATTATCAATCAGTTTGATTCG
CTACGAGAAcgttgttttcattagtaataCCGTCATCTTAACAGCGACAA
AGTATGGATGGAAAAGTAACTATCTATTCGCGTTATTTTTCGTATGCAAC
TCATTCGTCATCATAATAACATCCGCCCTAACTAAAACTGGTTTCTTCAA
AGGGCGTTTCCGCCCATTTTTCATGCAAACTATAGCCATAACCACTGCCG
TCCTTATATTGATTTCAATTAATCTAACCAAGGTAGACATTTTACGGACG
TTCGGACAACAAGTTGTATTTTTCTCTATCTTAAAACTTACCAAAGCGTT
CACCCTTTTCGTTGGTAACACATGTGGTCTTCTGCTACTCTTTCGCCTGG
TCAAACCGCAAGATAGCAGCTTCGTTGCAGGCTACAAGTCATTTATTATG
GTGATGTTTAAAGCGTATGGATTCTTGACAGCCTATAAAGCAGCATTTTA
tcctgaatattttcaaactcCGTTCGTGGTAGTGATGCTCGTTTTGGTGC
ACATTATGCTTCGGAGAAGAGAGATTCATCTTTATCGTACCaaaacaaca
aactaacttAATTAACTGATAAAAATTAgaacttaattttttaatttgta
ttATTCATTAATAGAGACATTCGTTAAGAATTGATGGAGGCCTTAACTgt
ctgaaagaagatagttggacagaagttctatgaatttcttcacatgtATA
GTGAAGATATGCAATACCTGTCAttgtagaaaaagaaaagtattgatata
gaAATA Run BLAST on NCBI protein sequence of TCONS_00011690-protein >TCONS_00011690-protein ID=TCONS_00011690-protein|Name=TCONS_00011690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
VAEMIKSQKYKEWQTNREIFRWITTAAIFLYGLESQGFLVTVLFYLMERY
DLSKDDVSFYLSLTQFLSCSVEMVSGLGLGRYADQTRNLRKVVLLNLAAT
FVLNLIYTLPVPLWVIIIARTLTGVSESLQTAVVGEFRRIYIDDKSKLVS
VLSWYEIALQTGRNFGAILLLILSSVSFKVGNWKIDKLNILNFLLSISGL
LLLIISLFKIKDVSKDFDRLKLTNDDVNHTVVSGEQTQGKSDLNEINKTS
TPAVNDDQPSLMKWHEVFTFDIITIILSISLIRYENVVFISNTVILTATK
YGWKSNYLFALFFVCNSFVIIITSALTKTGFFKGRFRPFFMQTIAITTAV
LILISINLTKVDILRTFGQQVVFFSILKLTKAFTLFVGNTCGLLLLFRLV
KPQDSSFVAGYKSFIMVMFKAYGFLTAYKAAFYPEYFQTPFVVVMLVLVH
IMLRRREIHLYRTKTTN Run BLAST on NCBI transcript from alignment at sc0000131:524250..526975- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011690 ID=TCONS_00011690|Name=TCONS_00011690|organism=Clytia hemisphaerica|type=transcript|length=2726bp|location=Sequence derived from alignment at sc0000131:524250..526975- (Clytia hemisphaerica)
GTGTAGCAGAAATGATAAAGTCACAAAAATACAAAGAATGGCAAACAAAC
CGGGAAATCTTTCGTTGGATAACAACTGCAGCTATTTTTCTGTACGGTCT
CGAAAGTCAAGGATTTTTGGTGACAGTTTTGTTTTACCTCATGGAGAGAT
ATGATCTATCGAAAGATGACGTCAGCTTTTATCTCAGTTTAACACAATTT
TTGAGTTGTTCTGTAGAAATGGTCAGTGGTTTAGGCCTTGGCAGATATGC
AGATCAAACAAGAAATTTGAGAAAAGTTGTTTTGCTAAATTTGGCAGCAA
CTTTTGTGTTGAACCTGATTTACACTCTTCCCGTTCCACTCTGGGTAATT
ATCATTGCACGAACACTAACAGGTGTTTCGGAGTCATTACAAACTGCTGT
TGTCGGTAAGATGTCTGTAGCTAACTCTTTGGAGGGATAGACTTAGACAA
AATTGGATATGAGGACGTGTCGCACATCAGGGTCCCCTTTTTAGGCTCTG
AAGATATCTGTGATATCTAGTGTTCTAAATATACTAATTTTCAAGATGTG
TACTTCGACTTTTTGACTATTTTCTTTCTCACAGGGTCTAAAATTGTCTA
AACTCCATCGGCACACCCCCCCCCCCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCCCCCTGTTGGTCGGCAAAGTCAGTGCCCCCTG
GGCTCGCAATAGGGAACTTTAGCATCTAGGAGGGTAGATTTGAAAAAGTA
CGGCAGAATTGAACAAAAAGAAAGCCCTTAGGGATTTATATCTGGATCGT
GGCTAGATTCTTTTCTTTTCCTATAAATTTTCTCATGATAAATAGTTTTG
ATAGGGTCCTTCAAAATTCTTTTTTGATGTCTCCTTTGGAACAAAGACGG
TAAAGGAAAAGAACAATAGTTTTAAATGATATTAATCCCTCGAGAATTAT
AAGGGCATTTTTTACAAAAACTTGACTGCATTTCAAATTTATCCATGCGA
TAATAAATCTAGATAATCTCGGAGAAAATTTGCCATGTGATCATAAGCTT
TACTTCACGTCCTCATTCAAGTCGCCGTCTTTAGATGCTAAAGGTCCCTA
ATTACTCACATACCGTTACGTAGTCTAATATACTTTTTCTACTCTCATCC
TTCCCCTCCCCTTCCCTCAGGCTTAAGAAGTTTTTCATCGGACAGATCTT
TTGAAAACTGCAGATATAAGAAGAAACTATTTTTTATCGAAGACCATCAT
TAAATTTCATTTTTTTTATCAATAGGTGAATTTCGGCGCATTTACATCGA
TGATAAAAGCAAATTGGTTTCTGTGCTAAGCTGGTATGAAATCGCCTTGC
AAACTGGAAGAAATTTTGGTGCTATTCTATTACTCATTTTATCAAGTGTT
TCCTTCAAAGTTGGCAATTGGAAAATAGATAAGTTAAATATTCTAAATTT
TTTGTTGTCGATTTCTGGACTGTTACTGCTCATTATATCTTTATTCAAAA
TAAAAGATGTATCCAAGGACTTTGACCGTTTAAAATTAACAAATGATGAT
GTGAATCACACTGTAGTATCAGGTGAACAAACCCAGGGTAAATCAGATTT
AAATGAAATTAACAAAACTTCAACACCAGCAGTAAATGACGATCAACCAT
CTTTAATGAAATGGCACGAGGTTTTTACTTTCGATATTATAACTATCATA
TTATCAATCAGTTTGATTCGCTACGAGAACGTTGTTTTCATTAGTAATAC
CGTCATCTTAACAGCGACAAAGTATGGATGGAAAAGTAACTATCTATTCG
CGTTATTTTTCGTATGCAACTCATTCGTCATCATAATAACATCCGCCCTA
ACTAAAACTGGTTTCTTCAAAGGGCGTTTCCGCCCATTTTTCATGCAAAC
TATAGCCATAACCACTGCCGTCCTTATATTGATTTCAATTAATCTAACCA
AGGTAGACATTTTACGGACGTTCGGACAACAAGTTGTATTTTTCTCTATC
TTAAAACTTACCAAAGCGTTCACCCTTTTCGTTGGTAACACATGTGGTCT
TCTGCTACTCTTTCGCCTGGTCAAACCGCAAGATAGCAGCTTCGTTGCAG
GCTACAAGTCATTTATTATGGTGATGTTTAAAGCGTATGGATTCTTGACA
GCCTATAAAGCAGCATTTTATCCTGAATATTTTCAAACTCCGTTCGTGGT
AGTGATGCTCGTTTTGGTGCACATTATGCTTCGGAGAAGAGAGATTCATC
TTTATCGTACCAAAACAACAAACTAACTTAATTAACTGATAAAAATTAGA
ACTTAATTTTTTAATTTGTATTATTCATTAATAGAGACATTCGTTAAGAA
TTGATGGAGGCCTTAACTGTCTGAAAGAAGATAGTTGGACAGAAGTTCTA
TGAATTTCTTCACATGTATAGTGAAGATATGCAATACCTGTCATTGTAGA
AAAAGAAAAGTATTGATATAGAAATA Coding sequence (CDS) from alignment at sc0000131:524250..526975- >TCONS_00011690 ID=TCONS_00011690|Name=TCONS_00011690|organism=Clytia hemisphaerica|type=CDS|length=2808bp|location=Sequence derived from alignment at sc0000131:524250..526975- (Clytia hemisphaerica)
GTGAATTTCGGCGCATTTACATCGATGATAAAAGCAAATTGGTTTCTGTG
CTAAGCTGGTATGAAATCGCCTTGCAAACTGGAAGAAATTTTGGTGCTAT
TCTATTACTCATTTTATCAAGTGTTTCCTTCAAAGTTGGCAATTGGAAAA
TAGATAAGTTAAATATTCTAAATTTTTTGTTGTCGATTTCTGGACTGTTA
CTGCTCATTATATCTTTATTCAAAATAAAAGATGTATCCAAGGACTTTGA
CCGTTTAAAATTAACAAATGATGATGTGAATCACACTGTAGTATCAGGTG
AACAAACCCAGGGTAAATCAGATTTAAATGAAATTAACAAAACTTCAACA
CCAGCAGTAAATGACGATCAACCATCTTTAATGAAATGGCACGAGGTTTT
TACTTTCGATATTATAACTATCATATTATCAATCAGTTTGATTCGCTACG
AGAACGTTGTTTTCATTAGTAATACCGTCATCTTAACAGCGACAAAGTAT
GGATGGAAAAGTAACTATCTATTCGCGTTATTTTTCGTATGCAACTCATT
CGTCATCATAATAACATCCGCCCTAACTAAAACTGGTTTCTTCAAAGGGC
GTTTCCGCCCATTTTTCATGCAAACTATAGCCATAACCACTGCCGTCCTT
ATATTGATTTCAATTAATCTAACCAAGGTAGACATTTTACGGACGTTCGG
ACAACAAGTTGTATTTTTCTCTATCTTAAAACTTACCAAAGCGTTCACCC
TTTTCGTTGGTAACACATGTGGTCTTCTGCTACTCTTTCGCCTGGTCAAA
CCGCAAGATAGCAGCTTCGTTGCAGGCTACAAGTCATTTATTATGGTGAT
GTTTAAAGCGTATGGATTCTTGACAGCCTATAAAGCAGCATTTTATCCTG
AATATTTTCAAACTCCGTTCGTGGTAGTGATGCTCGTTTTGGTGCACATT
ATGCTTCGGAGAAGAGAGATTCATCTTTATCGTACCAAAACAACAAACTA
AGTAGCAGAAATGATAAAGTCACAAAAATACAAAGAATGGCAAACAAACC
GGGAAATCTTTCGTTGGATAACAACTGCAGCTATTTTTCTGTACGGTCTC
GAAAGTCAAGGATTTTTGGTGACAGTTTTGTTTTACCTCATGGAGAGATA
TGATCTATCGAAAGATGACGTCAGCTTTTATCTCAGTTTAACACAATTTT
TGAGTTGTTCTGTAGAAATGGTCAGTGGTTTAGGCCTTGGCAGATATGCA
GATCAAACAAGAAATTTGAGAAAAGTTGTTTTGCTAAATTTGGCAGCAAC
TTTTGTGTTGAACCTGATTTACACTCTTCCCGTTCCACTCTGGGTAATTA
TCATTGCACGAACACTAACAGGTGTTTCGGAGTCATTACAAACTGCTGTT
GTCGGTGAATTTCGGCGCATTTACATCGATGATAAAAGCAAATTGGTTTC
TGTGCTAAGCTGGTATGAAATCGCCTTGCAAACTGGAAGAAATTTTGGTG
CTATTCTATTACTCATTTTATCAAGTGTTTCCTTCAAAGTTGGCAATTGG
AAAATAGATAAGTTAAATATTCTAAATTTTTTGTTGTCGATTTCTGGACT
GTTACTGCTCATTATATCTTTATTCAAAATAAAAGATGTATCCAAGGACT
TTGACCGTTTAAAATTAACAAATGATGATGTGAATCACACTGTAGTATCA
GGTGAACAAACCCAGGGTAAATCAGATTTAAATGAAATTAACAAAACTTC
AACACCAGCAGTAAATGACGATCAACCATCTTTAATGAAATGGCACGAGG
TTTTTACTTTCGATATTATAACTATCATATTATCAATCAGTTTGATTCGC
TACGAGAACGTTGTTTTCATTAGTAATACCGTCATCTTAACAGCGACAAA
GTATGGATGGAAAAGTAACTATCTATTCGCGTTATTTTTCGTATGCAACT
CATTCGTCATCATAATAACATCCGCCCTAACTAAAACTGGTTTCTTCAAA
GGGCGTTTCCGCCCATTTTTCATGCAAACTATAGCCATAACCACTGCCGT
CCTTATATTGATTTCAATTAATCTAACCAAGGTAGACATTTTACGGACGT
TCGGACAACAAGTTGTATTTTTCTCTATCTTAAAACTTACCAAAGCGTTC
ACCCTTTTCGTTGGTAACACATGTGGTCTTCTGCTACTCTTTCGCCTGGT
CAAACCGCAAGATAGCAGCTTCGTTGCAGGCTACAAGTCATTTATTATGG
TGATGTTTAAAGCGTATGGATTCTTGACAGCCTATAAAGCAGCATTTTAT
CCTGAATATTTTCAAACTCCGTTCGTGGTAGTGATGCTCGTTTTGGTGCA
CATTATGCTTCGGAGAAGAGAGATTCATCTTTATCGTACCAAAACAACAA
ACTAAGTAGCAGAAATGATAAAGTCACAAAAATACAAAGAATGGCAAACA
AACCGGGAAATCTTTCGTTGGATAACAACTGCAGCTATTTTTCTGTACGG
TCTCGAAAGTCAAGGATTTTTGGTGACAGTTTTGTTTTACCTCATGGAGA
GATATGATCTATCGAAAGATGACGTCAGCTTTTATCTCAGTTTAACACAA
TTTTTGAGTTGTTCTGTAGAAATGGTCAGTGGTTTAGGCCTTGGCAGATA
TGCAGATCAAACAAGAAATTTGAGAAAAGTTGTTTTGCTAAATTTGGCAG
CAACTTTTGTGTTGAACCTGATTTACACTCTTCCCGTTCCACTCTGGGTA
ATTATCATTGCACGAACACTAACAGGTGTTTCGGAGTCATTACAAACTGC
TGTTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011690-exon-sc0000131-1575043694:526571..526975 | TCONS_00011690-exon-sc0000131-1575043694:526571..526975 | Clytia hemisphaerica | exon |
| TCONS_00011690-exon-sc0000131-1575043694:524250..525450 | TCONS_00011690-exon-sc0000131-1575043694:524250..525450 | Clytia hemisphaerica | exon |
| TCONS_00011690-exon-sc0000131-1510915933:526571..526975 | TCONS_00011690-exon-sc0000131-1510915933:526571..526975 | Clytia hemisphaerica | exon |
| TCONS_00011690-exon-sc0000131-1510915933:524250..525450 | TCONS_00011690-exon-sc0000131-1510915933:524250..525450 | Clytia hemisphaerica | exon |
| TCONS_00011690-exon-sc0000131-1491911889:526571..526975 | TCONS_00011690-exon-sc0000131-1491911889:526571..526975 | Clytia hemisphaerica | exon |
| TCONS_00011690-exon-sc0000131-1491911889:524250..525450 | TCONS_00011690-exon-sc0000131-1491911889:524250..525450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:524250..526975 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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