TCONS_00011683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011683
Unique NameTCONS_00011683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011683 ID=TCONS_00011683|Name=TCONS_00011683|organism=Clytia hemisphaerica|type=transcript|length=858bp
GGAAGGAATAAGGTGAATCTTTACTTCGAAACACGTGACCAACACGTGAG
CATGGAATGATTTCAAGATTGCCACCACACATCCAGATCTAAAGGAAAAG
AAAACCAAGAATCGTATGACGATTCAAGGATATCCGATTGCTTAAAACGG
AATCGAAAGAATGCTCTCCAAACAGTTTCATGGATTCCGACTTCAAATGT
TGCGGTAACACAGCTGGCTCTCCGTTATAACCGAGTGATGGGATTACAAG
CTCTGGATAAACCTCTAATGACAGAATGGATTGCTCACTGTCCTTTAATT
TAGCATCTTGCTCGTTGGGATTGTCGGAGAATTTTGACGACGCTTGTGTG
TTCGCGTATACAGGATCAAGAGAAGATGGTTTCGTTGGAAAATTTGTAGG
AGCTGGAATTCCGATTCGGGAATGTCGAAGAACGGGAGGTGTAAATCTTC
CTAACAAATCTGCCCGTTTATTGACGTGTGCAGTATTCTCGTGTTCAAAG
ATTAGCAAAGCAGAGCCTCTGCTATGCAATAGATAAAGTACATTGAAGGA
GAGCCACCATAGACTTGTCAGAAATAATACGAGAagaatggtttgttttg
atttcacacGATGCTTCTTAAAAGTTATGTATCTCGTTCGTCCACGCCTA
TTCCATGGCCAAGCACTGTGAATTGGATATTCATACAATTCATTGAAACG
TTGTAATAATCTTACGAACATTCCTTTGATATTTTATTATgacaaatttt
tactttaataaCAATTCCATTTTTTACATTATACCGGTGGATTAAAGATT
AGCACAGTCTAAATTCAAAGTTTAACCGTACTTTCATATCATAAAATAca
ttataccg
Run BLAST on NCBI

transcript from alignment at sc0000131:416789..423607-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011683 ID=TCONS_00011683|Name=TCONS_00011683|organism=Clytia hemisphaerica|type=transcript|length=6819bp|location=Sequence derived from alignment at sc0000131:416789..423607- (Clytia hemisphaerica)
GGAAGGAATAAGGTGAATCTTTACTTCGAAACACGTGACCAACACGTGAG
CATGGAATGATTTCAAGATTGCCACCACACATCCAGATCTAAAGGAAAAG
AAAACCAAGAATCGTGTAAGCGGATAATACTTCATAATTTATTTCTTCTG
GAGCGTCCGCCGAAACTTCAAACTCTACATTTAAAGTGAGGTTGAGAACC
GCAATCTTACGAGGAAGGTTGAAGAGCTAGGATATTCTGTCTCGCCCAAT
CAATTCAGGCTGGAATATAATTTTTTTATCTCAAAAAATACGTAATAGCT
ATAATTTTCTGTACAATATTTTCCAAGCCTTTAAGCGAAGAAAATATACA
GAAAATCCGGAACGAGTGAAATATTTCCATTTTGTACGAGCAAATATCTG
ATAACTGGTTTATCGGTGACCCAAAAAATGCACTTTTTGTGTTGGAAAAA
AAGCGCAGGGCAGTTTTGTATCAAAGTGACGTTAGATTGCTTCTACCGCT
ACAATGTAACAACATCTTTTCCTTTCGTCAATTTATATTTTGCACATGTA
TATACAAGATATATTTTGTACTCTTTTTAACCAATCAGATTACCGATATC
TTTTGGATCGCCGATAATTCTAAGTATTTACCTAGTTTAAAAAAAAGCGA
AACTACATCAGCCAAAATCTAATATTTCTAGAGGCTATGCTAGGTATACT
TAGAGATTGTTAAACATAGGGATAACTAATTCATAGTTGCACAGTACTAT
CTTTGAGTCCCAAATTCAAATCTAAGTAAACCATACTGTAAAATAGTCGA
ACGTGCGCAACGCACTGGGCTCAACTTCAGTGGCTTCAAATCATTCATAG
GCCCAATTGTAGACCTCCAGATATTCACCCAATGAACAAGTGTGCCAAAT
TTCAACCAAATCCGATCATTTTGGAGGCCTGTAGACTGCTCCAAAGCTTT
AGCCTCGTTTTGGCAAAAAAACTCGTTCCCAGGCCTCAAAAATCAAAATT
TTTGAAAAATGCAAAAAGCAACCCCAGATATTCACCCAAGGAACAAGTGT
GCAAAATTTCAGCCAAATCCGACCATTTTTGAAGTCTCCAGGCTGCCCCA
AAGTTTTAGCCTCGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGTCTCCAGGCTGCCCCAAAGTTTTGGGACATACACACACACA
GACACACACACAGACACACATTCTCAGATTCTAACTCAACTGAAGTTGAG
AATACTAACATCTAAGTAAAAAAAGTTTACAGTATGAATACTAAAGCTAA
GTTTTTTAAGCTGTCGTTCTAGTTTAAGTGTTGCTTGATAAGAATTAAAA
TGTACATACGTACCCTAAAAGACAATTCTAAATTTTCACCACCCCAGATA
TCCATTTGATCATCGTACGTGCCAAGCTCGAAGAAGTATGATCGATCCAT
GCTGAATAAACCACCTGCCATCGTTGGTGACCTGAAGGAGTGATTGCGAA
GGTTAGTTGTGCATACTATGATGTACCTATCAGACCCTCAAAAGCGTGAG
GAAATTGGGTTCAACAAGAATGATCGACGTCAAATAGTCGTATTGATACT
CTCGATGACATAACCTTTTGATATCTCGACCTAGGCCTTTTGTTGCGCTT
GGGGTTGAAGTATTTTTGAGCTGAAATGCCTTGAAATTGAGGTGCTGTAT
ATGCGTAGAAAATGGCTTGTGTTTAAGATTTTCAATCTAGAAAGTGTTAT
GCTTGTAAATGAAGAAAAACTTGCGATATATTGTCCATAAAAATGCAATT
TATTATGTTTTTGGCTGTCTTTGTTTTATTCGTTTTGTGAATCTGAACGG
TTGATAACTTACTTTAGAGGATAGGTTTCGTCCAGTCTTTTCTTGTCTTC
TTCCGGAGAAATAGCTTTCCAATCGAAAAACAAATTCCAAGTGAAGCTGC
CGACCTGTTTAATCTCCTTTGTTGGTGTGGCTTTGTATGAGAAATCATTC
GCATCTATAATCTAAATGTGATGTAGAACACGCCTGGTCACACTATGTTA
TTTCGAATAAACGCCCCCTTCTTGTACACGCCCCCTCGAATAAACATCCC
TCCTTCAAGGTAAAATTTTCGATGAACACCCCCCCCCCCTTCAAATAAAC
GAGAAGTATCACATAAAGAAAAATTATATATATGATAGTAATTGTATGAT
AGTAATTGTATTCTTTTCGAATTAAGTTTTACCCATTCCTACATCCCAAA
ATGACATATTTGAAAAACCTTATAAATTATTAACGCCCCCTTATTTTAAA
CGCCCCTCCTAAAATAAATCCAAAAAATTTAATAATTATTCGAAGTAATA
CGATAACTGAATGTTTGAATGGCTAGAAATTCATTGGCTGTATTTGAATC
CGTATGGGACCTTATTCTTCTGGAAAAATGTGTGAATTCTTGCTGCCTCT
TGACATTGACATACATCTCTTCAACGTACATCTAAAATAGATGAACGTTG
GAAAGATTTTCTCAATGGCAGCTTGATCTTTTCACTTACCTCAATTACCG
GGCAAACAACATTTTTTCTGTCCTCTTTGATTCGATGTAACAATGGTTCA
GCCCAGCCTTTATTCATTTCACAATGCGAATCGAGAAAAGTCAACACTTT
TCCACGGGCTAACGAAGCACCATTCAGCCGTGACCGAACAATCCCTTGAC
GCTGTTTGTTTTGTAACAGTATTATTTTGTTGTGCCACACTGTCTTTCTG
AGTCTTAGTTTGTGTCGCTTGATGTGAAATAGTAAGTTCCCTATCAAAAA
CAAAGAAGAAGTTGAACGCCTTTTAAATCTATCAATAACGGTTGCGCTAT
CATTTTATCAAAGGCTTAGTATGATACATTTTTTAAGATAAAGATTGCTA
CAAAATTGTAAATTGATAACTTTGCTAAATCTGAATAAAGCAACATTAAA
AGTACGACCGTATCGATAAGTGATCGACTTAAAGTAGTGGATGGCCACTC
AGAACAGAGTTCTAGTTCCCAAATTCTTGCTGAATTCAGGTTCAAAGGAG
TTAGAACTGATTAGCCTTCGATACAGGGGTGTAAGTTAGTACAAAAACTA
CTAGTCTCACCTTTGGTAGAAGCGTCATCAATGAGAATAATGTTTGTGAC
CAAATGTGGTAGAGTGTTTCTGATGATACTGTGAACAGTGCGAAGGAGGG
TAGAGAGTGCTTCATTATGGAAACATATGATGATACTCATGTCAGGAAGG
TTTGGTGAATATGTGGATACTTTGGCTCTGCATCTGCAAAGAGAGGAAGG
AGATGTGTATTGGTGACAAGGGGGGGTTAAAGACCGTGACTTTTTCGATG
GAAAAACTGCAACTTTCATTAATTTTTCAATAGATTGCAGCTTTTCACAA
TGACGTCACTCTTAGTTTTTTGGCTTCTCCTATATCATGATTAGAGGTGT
GTCTTACCAAATTGTCAGTTAAGATGATGTTCAGGAACGAGTAAAACATG
GTTTCAGCCCACTTTTCAGGTGCCCCCATTGAGCATGGTGCCCCCAGCAA
TCTAGGTCCCCTTGAAAAATTGCTTTGAGTTAGGTACCCCTATTCAACAG
ATAATTTCTTTGAATTGACACTTTTTGTTCTTTTGTCATTCCTAAAATCA
TGCTCACGCATGAACGCCTGCTAATAAGCTTTGTTGTTATGCTATAAAGA
TGGCGGCTGTAAATCAAAACAATCACATTATAAAAATATAGCAAAAGATG
GCGTGATGGGAAACTAGGTGCTGGGGTAAAAAAATTCAATAATTTGAAAT
ATTTTGAAATATTAGATTTGGAAAATATAACCAGCCCCCAGAGCCTCCAT
CAAGACAGCTAGGTACCCTTAATGAATAGGTAACCCCAAAGAATTGCAAG
GCATTAGCCCCACTAACCTGGCCTAGGTGCCCTTCAGATTTCTGGGGGGG
GGGGCTGATACCATGGTAAAAGCTTTCATAGTTGGGGATAATTCTATTGT
ATGTGGTAATGGCATTTAATGGTAGCCTTTACTCTTAGCTAGAGATCCTT
CATATTTTGTCAAAGAATTTACGCAATGCCTATTTGAATGCTATAATGAT
GCTGCGGATGTATCAATGGAAACAATTATGAATTTTAAGTTAGTCCGGAA
ATTGACTGGATTTATTTGCAATAACAATTAATTCAGTTAGAGAAAATTAG
CTTGGTCTGCTAATTTTATTTATTCTGCATTACCGTAACCTGATTACTTC
TGAGAAAACCCATTAGCATATGTTTTGGCATTCAAATAATATTTGTATAC
TTACCTGATGAATTTTTGTCAATTCTGCTAAAAAATTTTTGGCTTTTTAG
CGGTAATTGTTTTCCACAAGATCTTTTAACCTATCGACAAAAAACCTTTA
GAGCTATTTCGTAAGTTTTACGTGATTTTAAATTTGCGTTGTCATAAGCG
ACATAACCTTGACGTCAGCACTTTAGATGGCTATTTTATCTATGAAAACA
CGTATAACCGTTGCTATGTATTCTCTTTTAAACGCAAGCCACGAATTTTT
GATTGATTTAAATTTTCTTCCGTTAACCAAACAAAGCTTAACCATTTATC
ATTTTCAATTTTTTCTCGATAACCCTCTTGAAATCCGTTTAAAAGATTAG
TGAGTTGGTTTTTTTATCATCGAGACTACGAACTAAAGAAGATTGTTATT
GTTGGTTGATTTAGTCTCCTCAAGTTCATATGTCTCCTAAAAACCGTTAA
CAAAAAAAAACAACTGAAAAACAGTCAAAATAAAGTGCTTGATCGGCGAC
TCTACTCTTCGAAAAACTTTGCTGAGTATTATCCTTATTTAAAGATTTTG
ATCGCGAAAAGGCCTTTTCAACGATCATCTCAAGAAATTTGTCTCGTTTT
CGAAATAGCGCTTCTTTTTAATTTAGTTTTTCAAAGTCTCAAATGAAATT
GTCTTTTTGTTTCAAAACGAGGCAATTCTCGTAACTCGTAATACACTTTG
TCAAAAGTGAGGCCTTTATGAAAGCATTTAAATGAAAGTAAAGATGCCAT
AAATTGCTACTTGATGTTCATATACACACCCTTATATGGATTTCTAGGCT
TACTTCTCTCCTCTGTTATCTTTTAGATGACGATTCAAGGATATCCGATT
GCTTAAAACGGAATCGAAAGAATGCTCTCCAAACAGTTTCATGGATTCCG
ACTTCAAATGTTGCGGTAACACAGCTGGCTCTCCGTTATAACCGAGTGAT
GGGATTACAAGCTCTGGATAAACCTCTAATGACAGAATGGATTGCTCACT
GTCCTTTAATTTAGCATCTTGCTCGTTGGGATTGTCGGAGAATTTTGACG
ACGCTTGTGTGTTCGCGTATACAGGATCAAGAGAAGATGGTTTCGTTGGA
AAATTTGTAGGAGCTGGAATTCCGATTCGGGAATGTCGAAGAACGGGAGG
TGTAAATCTTCCTAACAAATCTGCCCGTTTATTGACGTGTGCAGTATTCT
CGTGTTCAAAGATTAGCAAAGCAGAGCCTCTGCTATGCAATAGATAAAGT
ACATTGAAGGAGAGCCACCATAGACTTGTCAGAAATAATACGAGAAGAAT
GGTTTGTTTTGATTTCACACGATGCTTCTTAAAAGTTATGTATCTCGTTC
GTCCACGCCTATTCCATGGCCAAGCACTGTGAATTGGATATTCATACAAT
TCATTGAAACGTTGTAATAATCTTACGAACATTCCTTTGATATTTTATTA
TGACAAATTTTTACTTTAATAACAATTCCATTTTTTACATTATACCGGTG
GATTAAAGATTAGCACAGTCTAAATTCAAAGTTTAACCGTACTTTCATAT
CATAAAATACATTATACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006555XLOC_006555Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011683-exon-sc0000131-1575043694:423493..423607TCONS_00011683-exon-sc0000131-1575043694:423493..423607Clytia hemisphaericaexon
TCONS_00011683-exon-sc0000131-1575043694:416789..417531TCONS_00011683-exon-sc0000131-1575043694:416789..417531Clytia hemisphaericaexon
TCONS_00011683-exon-sc0000131-1510915933:423493..423607TCONS_00011683-exon-sc0000131-1510915933:423493..423607Clytia hemisphaericaexon
TCONS_00011683-exon-sc0000131-1510915933:416789..417531TCONS_00011683-exon-sc0000131-1510915933:416789..417531Clytia hemisphaericaexon
TCONS_00011683-exon-sc0000131-1491911889:423493..423607TCONS_00011683-exon-sc0000131-1491911889:423493..423607Clytia hemisphaericaexon
TCONS_00011683-exon-sc0000131-1491911889:416789..417531TCONS_00011683-exon-sc0000131-1491911889:416789..417531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:416789..423607 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000883581	0.22625	0.224623	0.199154	0.73036	0	3.39925	2.65266	0.921478	8.48319	3.38064	4.65081	1.41787	3.19513	6.2776e-05	2.53451	4.63232	4.98881	0.0415615	0.922631	0.888812	1.65242	0	0.691251	0.715179	0.412015	28.25	16.779	21.7414	21.8919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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