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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011676 ID=TCONS_00011676|Name=TCONS_00011676|organism=Clytia hemisphaerica|type=transcript|length=2392bpRun BLAST on NCBI transcript from alignment at sc0000131:310822..316893- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011676 ID=TCONS_00011676|Name=TCONS_00011676|organism=Clytia hemisphaerica|type=transcript|length=6072bp|location=Sequence derived from alignment at sc0000131:310822..316893- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011676 vs. Swiss-Prot (Human)
Match: PTPRS (Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens GN=PTPRS PE=1 SV=3) HSP 1 Score: 213.001 bits (541), Expect = 9.511e-57 Identity = 105/242 (43.39%), Postives = 152/242 (62.81%), Query Frame = 2
Query: 365 ANSPTNKHKNRVVGRGAYDDMRVILSEIEGIPGSDYINANRINGYQVKDAYIASQGPLEGTCEDMWRMCWEKNISTIVMLTQCVDQGREKCFKYWPDEGIKCYGSIEVTITETKSHAVYEFRSFKMCHKKVSGITKTIEHFAFGGWNDFQIPN-EEELLTLMKNVNKTHDKNGVDHPLLVHCAAGCGRTGTFIVLHICLKQIRSEGKVDVFECLKRVREQRSYIVETQAQYEFIHKALVKGM 1087
+N NK KNR AYD RVIL IEGI GSDYINAN ++GY+ ++AYIA+QGPL T D WRM WE+ +TIVM+T+ ++ R KC +YWP+ G + YG I+VT+ +T A + R+F + HK S + + F F W D +P L ++ V + + P++VHC+AG GRTG FIV+ L++I+ E VDV+ + +R QR+Y+V+T+ QY FIH+AL++ +
Sbjct: 1411 SNLEVNKPKNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDGYRCQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFCVRTFSL-HKNGSSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDA--GPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAV 1649 HSP 2 Score: 213.001 bits (541), Expect = 9.851e-57 Identity = 114/286 (39.86%), Postives = 167/286 (58.39%), Query Frame = 2
Query: 248 TCIEAKSLREYVKK------GTEEGLFKEQFQKLVFYKGDDYQKI-ANSPTNKHKNRVVGRGAYDDMRVILSEIEGIPGSDYINANRINGYQVKDAYIASQGPLEGTCEDMWRMCWEKNISTIVMLTQCVDQGREKCFKYWPDEGIKCYGSIEVTITETKSHAVYEFRSFKMCHKKVSGITKTIEHFAFGGWNDFQIPNE-EELLTLMKNVNKTHDKNGVDHPLLVHCAAGCGRTGTFIVLHICLKQIRSEGKVDVFECLKRVREQRSYIVETQAQYEFIHKALVK 1081
T + A+SL Y++K G + +F++L K + I AN P NK KNR+V Y+ RV L I G+ GSDYINA+ I+GY+ + AYIA+QGPL T ED WRM WE N + +VMLT+ + GREKC +YWP E Y V + Y R FK+ + G ++T+ F F W + +P E + + V+KT ++ G D P+ VHC+AG GRTG FI L I L+++R EG VD+F+ +K +R QR +V+T+ +Y+F ++A ++
Sbjct: 1654 TEVPARSLYAYIQKLAQVEPGEHVTGMELEFKRLANSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDAR-DGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQFCYQAALE 1938 The following BLAST results are available for this feature:
BLAST of TCONS_00011676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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