|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011670 ID=TCONS_00011670|Name=TCONS_00011670|organism=Clytia hemisphaerica|type=transcript|length=1853bp
AGTTAAAAAGAGAGGACTGGAAAGAAAAGACcacattttttcatcttcat
ttttcttgatCACCAAAAAGATTCGGACCAGCAAtgttttattgattgat
ttttctctctctttatttattctttctttattttttttagtttgaagTTC
ACatataaaaagtttaaaaaacatttttggaagGGGATCGATTAGTATAA
GACTGTGAATGAACTGTGGTGTGGCTTATTGAGTGAAGAGAGAAATGTCG
TCCAACGAAAAAATTGTCGTCATTGACGTGACCTCTTTACAAGAATGTAC
TGCTGAAACGTTGAAATGCAGCGAGAAAATTAAAGCCGAAAGTACACAAA
AATGTGACGAAAACAGTACCGAGTGTAAACCAACTTTCAACGAATTGTCA
ACGACAAAAAACGAGGATTTTGAGGAATGCAAAGAGAATCGAGGTTGTCA
ACAAGATCGAAATGGAAGTTTCAAATTCTCCACAACAACTTATTGTGGTA
CATGTCGGAAAGTGTTGGAAGCAGATTTGGTGGATGGACAGTGCGAGAAA
TGCAATAGGAACATTATGCATGAACTTTCAAAAGATGATACTGTGAGTCA
ATTACAAATTTCTGTTGATAATCTGGATGGCTGTAGCGAGCAACCGAGTC
CTGCTAAATCAACCACAACAATCATTAGCGCTACAGCCAGTGAACGTACA
TGTCGGATCTGTTTGGATAATATAGACCAAGGGGACTTGATAGCACCATG
TAAATGTTCAGGATCTACAAAATATGCTCATGAAAGTTGTATGTTGAAAT
GGTTTTTCAAATCCAGTAAAAAGTCGTGTGAAGTTTGTCTTGGAAATGTC
AATGTCAAACCTATCGGATTCAAACCTTTTCAAGAGtgGCGTTTACCGGA
CAGCGGTTGTGATTTCATCGTCTACTTATTCGGTTTATATTTCCTCATCA
TGATCGTTTTCACCGGAATGATTACGTGGATTGCTACGCAAGGTTGTATC
GCTCCCGTTTGTGTTACGTTATACACCGTATGCGCCGTTGCTGTGTTCTA
CTTTTTTTACTGCTGTGGGTGCGTGGAGTATTCACGCCGCTACTGGAGGG
CGTTATTATCCGTTAATAAGGTATGGCGTATTTATGGGCGGGCTGATAGT
CTAAAAAACTTTAAGCATCAAGTTAAGAAGGGTGATTGCAAGACACCAAC
GAATAATATCTTAACGTCCAATAAAAACGAACCTTTTGTGATTAATATTG
AGACGAAATTGACGGCACCGATTGAAGTATGCGCCGAAGCCTCCTCATCT
AGTTTACAAGAAGACAATAATAATTTGAATGCGGTACCGGATGATTCGAT
GGGCATTGATAATGTTGCTATGGAAATTGAAGATATGGAATGTGCATGTG
CAAATAATCAAGATGGTAGCAAAGCAATagtatgatgtttttaaaagaat
ttttttcaagtgattgtttgattttctagTTCGGCTTTTCGAAAACCCTT
AGAACTGTCCCTGTGTTAGTACATTACTGTCGGGATTATTGAAGATATTT
CAGATCTAGTTCTCAACATAAAATATGCTCTGCCACTCTTTTTCACAGTG
TTTTCAGCACTAAGTGCATTATTTGTTCAAATGACTATTAcatagtttta
ttttatttcactcataaaatttcaaattttatttatttcattttatgatt
tttattgaAAGTTATTTAGTCACCACTTTTTCATATATTAACCCACTTTT
TTCATATCACGTTTTTTATTTGTATTGATGTAAATAGTCGacgaaaattt
ttactttatgaaataatttgtacaaaaaaatatgaaaattatgtaaaaat
aac Run BLAST on NCBI protein sequence of TCONS_00011670-protein >TCONS_00011670-protein ID=TCONS_00011670-protein|Name=TCONS_00011670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MSSNEKIVVIDVTSLQECTAETLKCSEKIKAESTQKCDENSTECKPTFNE
LSTTKNEDFEECKENRGCQQDRNGSFKFSTTTYCGTCRKVLEADLVDGQC
EKCNRNIMHELSKDDTVSQLQISVDNLDGCSEQPSPAKSTTTIISATASE
RTCRICLDNIDQGDLIAPCKCSGSTKYAHESCMLKWFFKSSKKSCEVCLG
NVNVKPIGFKPFQEWRLPDSGCDFIVYLFGLYFLIMIVFTGMITWIATQG
CIAPVCVTLYTVCAVAVFYFFYCCGCVEYSRRYWRALLSVNKVWRIYGRA
DSLKNFKHQVKKGDCKTPTNNILTSNKNEPFVINIETKLTAPIEVCAEAS
SSSLQEDNNNLNAVPDDSMGIDNVAMEIEDMECACANNQDGSKAIV Run BLAST on NCBI transcript from alignment at sc0000131:118964..123300- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011670 ID=TCONS_00011670|Name=TCONS_00011670|organism=Clytia hemisphaerica|type=transcript|length=4337bp|location=Sequence derived from alignment at sc0000131:118964..123300- (Clytia hemisphaerica)
AGTTAAAAAGAGAGGACTGGAAAGAAAAGACCACATTTTTTCATCTTCAT
TTTTCTTGATCACCAAAAAGATTCGGACCAGCAATGTTTTATTGATTGAT
TTTTCTCTCTCTTTATTTATTCTTTCTTTATTTTTTTTAGTTTGAAGTTC
ACATATAAAAAGTTTAAAAAACATTTTTGGAAGGGGATCGATTAGTATAA
GACTGTGAATGAACTGTGGTGTGGCTTATTGAGTGAAGAGAGAAATGTCG
TCCAACGAAAAAATTGTCGTCATTGACGTGACCTCTTTACAAGAATGTAC
TGCTGAAACGTTGAAATGCAGCGAGAAAATTAAAGCCGAAAGTACACAAA
AATGTGACGAAAACAGTACCGAGTGTAAACCAACTTTCAACGAATTGTCA
ACGACAAAAAACGAGGATTTTGAGGAATGCAAAGAGAATCGAGGTTGTCA
ACAAGATCGAAATGGAAGTTTCAAATTCTCCACAACAACTTATTGTGGTA
CATGTCGGAAAGTGTTGGAAGCAGATTTGGTGGATGGACAGTGCGAGAAA
TGCAATAGGAACATTATGCATGAACTTTCAAAAGATGATACTGTGAGTCA
ATTACAAATTTCTGTTGATAATCTGGATGGCTGTAGCGAGCAACCGAGTC
CTGCTAAATCAACCACAACAATCATTAGCGCTACAGCCAGTGAACGTACA
TGTCGGATCTGTTTGGATAATATAGACCAAGGGGACTTGATAGCACCATG
TAAATGTTCAGGATCTACAAAATATGCTCATGAAAGTTGTATGTTGAAAT
GGTTTTTCAAATCCAGTAAAAAGTCGTGTGAAGTTTGTCTTGGAAATGTC
AATGTCAAACCTATCGGATTCAAACCTTTTCAAGAGGTATGTCGTTATTC
GAAAAATTATTTTTTTATTCTATTTTTTCAGAGGGGCCTAACAATTCATG
ATATTTATTACGGAATGTTTTCTACGGAAATACTCTAGTTTGGCAAATTT
TAAAATGTTTTCTCTAAATTGCTACTACTGGTAAAGACCGGGCGTTGTCG
TGTTAAATCTCGTCATCTCTAAATAACTAAGTATGTGAAATGTGGGTTGG
TGAAAACTTTCGAGAGATAATTTTAGCTTTGTATCAGAGTTCCAATCAGA
GGGTCGTCGTTAAAATTTATTCATGGTCAGGAGTAAAATTATAAAATGCC
ATTTTCGGCTTTTTAAAAATGGTTTTTGATTGAAGTAAAATCAAATTTAA
TAGAAGCTTGTTAGAGAAAATGACTACGCGTGGTTTTCTTAATATCGTGC
CATAAAAATTCTATTGTGGTCAAAATTTGCTTTTGTCAATCAGTAATAAT
TGCGAAAAAGAAAAGTCATTTCAATGCTATAATATGAAAGCTGAAAAACA
AATTGGTCCCTGAACAGCGCGACAAAAATCTATGGGATGACTACCCATTA
TACTTCAAGAGCCGTCTAACTAGAATATAATTGGAAAGAAACTTATTTCA
GACGCCTACGAAATACGGAAAAATTCCTTTAAAGTCTAATCTTTGCTTAA
ATAAAAATATTTCGTTGGGATTCGTATTATTTATCAAGAGGAGATTTCGA
AAATCCTCCTACTCACATTTTATTGTCATTTGTTTTTCAAGACAAAAATA
AAAAGTCAATATTTTATTCAAATAAAAACGATTTCAAGTATTATACTTGT
TCACAACAAGAAAATCACTTGAACTCAAATATCGATCCACTTTTACGAAA
TCTCACCAGGAGAATAAGATCCTTTTCATTACAGTAACTCACAAAGTAAA
CTTTAAAGTTATTTGTTCAAATATATACCTAAGTGTTAATGTCGTACGAG
CACAACATTTCAAAATATTTTCCTGTAGATTTCAAAAAATACCTTAAAAG
ATAGACAATAGTGGATATAAAATCTTCTAGAGTGAAGAGTTTCTCTGCAA
ATATCTCACACACGATCTCACCTCCAAAATTTGGTCAAAGTTTCGTTCCC
AACGGGAAAAATGCCCTACAATTTCAATCCCACTGGAAAAAATTGCAGTT
CAAAACTATCCCACTATCCTAGCTGGGAACAATAGGATTTACACGTGTTT
TTTATAAGAACATTCAAAATATTTGAAAGCCTTCAGATGTTCTTAACTTT
TTGAGTCTTAAGCCTAAAAATGTTCTTAACTTTTTCTTATTTTTACCATT
TTGTGAATACTTTTGTCCATTTTTTAAAGAAAATAGGTGGTGGTGTTTCT
AACTTGTTCTTTATAATATTTTGGCCATCGAAGCCTGATGTTCTTATATA
GTTCGTTCTTATAAAAAAAATGTGTATAAGGGGAATCGGAGATGTGATCA
TACGACCATACATATTGGAAGTCAAGGTCATACATAGACTTCCTCTTGTA
GGATAAGTCAACATTAGTAAGCTTTTCACCAAAGGATTAGAGTATGATAG
CATCGGACCATCTCACAGATATCTCTCTCAATACAAACAAACAAGGAGAG
AACTGATTGGATTAGAAGCACACTGAAAATCAAACTGTCTTAGCACATAG
GTGATAATCTGTGGTAAACAAGGTTAAAACACAAATCAAATTTTGAGAAT
TTGAAATTGAGAGTATCCGTAACTTTAAAATCCTAGCCTTTCTTAAATGG
TTGTCTTATTGGGTAATGAAAGGAATTTTTTTATTGAGTCAATATCAGAT
CCACTTCCTTCTAGGATGTAAGATGATTTTGGACAAACTTGAATTAAATT
ATAGAATCACTTCTTTAAATTACTAATGAGGTTTAAAAATTTCAAAACGA
GGGCAAATTTTAAGAACTATATGACCTTAGTTTTAAGCAAAGATTAAAAT
GTGGAAAACTAGGGCCATGAAGGAAGAACTTCACAAAAACATCCCCAAAA
AAAGATCTGAATAATTTATAAGAAGCTACAAAAAAATGCGTGGTATGTGT
GGCATTTGGATAATGTACCGAAAAAAAAGAAGAATTCAAAAACACCAAAG
CCCACGTTTTCAAGAAAACCTTTCTTTTCGCAGGGTTTTAAGGAGCTAGA
AGCGGAGGGGAAAAGGGTAGAAAATATTACCCTTTTTCATCTGTTTTGAG
TAAGAAGCTGAAAATGTGTTAAAAGAAGGGAGCCTCTTACCACGCATCTG
ATACTTTTTCATCAAGGACCAGTTATATAACTACAGTATAAAATAGAATT
TTTTCTCCTTTACTCCAAAGAAAATGAAAGGTTCCATAAAGAATAATCTT
GCGAAAAACTAATGGTCAACAAATGGTATACAGTCACTTGTAATCTCATT
TTACCGTATGTTAAGATATAAAATCAGAGACTCAGTAAAATCAAAATTAA
TTTATTTTCTTTCTTTTTAGTGGCGTTTACCGGACAGCGGTTGTGATTTC
ATCGTCTACTTATTCGGTTTATATTTCCTCATCATGATCGTTTTCACCGG
AATGATTACGTGGATTGCTACGCAAGGTTGTATCGCTCCCGTTTGTGTTA
CGTTATACACCGTATGCGCCGTTGCTGTGTTCTACTTTTTTTACTGCTGT
GGGTGCGTGGAGTATTCACGCCGCTACTGGAGGGCGTTATTATCCGTTAA
TAAGGTATGGCGTATTTATGGGCGGGCTGATAGTCTAAAAAACTTTAAGC
ATCAAGTTAAGAAGGGTGATTGCAAGACACCAACGAATAATATCTTAACG
TCCAATAAAAACGAACCTTTTGTGATTAATATTGAGACGAAATTGACGGC
ACCGATTGAAGTATGCGCCGAAGCCTCCTCATCTAGTTTACAAGAAGACA
ATAATAATTTGAATGCGGTACCGGATGATTCGATGGGCATTGATAATGTT
GCTATGGAAATTGAAGATATGGAATGTGCATGTGCAAATAATCAAGATGG
TAGCAAAGCAATAGTATGATGTTTTTAAAAGAATTTTTTTCAAGTGATTG
TTTGATTTTCTAGTTCGGCTTTTCGAAAACCCTTAGAACTGTCCCTGTGT
TAGTACATTACTGTCGGGATTATTGAAGATATTTCAGATCTAGTTCTCAA
CATAAAATATGCTCTGCCACTCTTTTTCACAGTGTTTTCAGCACTAAGTG
CATTATTTGTTCAAATGACTATTACATAGTTTTATTTTATTTCACTCATA
AAATTTCAAATTTTATTTATTTCATTTTATGATTTTTATTGAAAGTTATT
TAGTCACCACTTTTTCATATATTAACCCACTTTTTTCATATCACGTTTTT
TATTTGTATTGATGTAAATAGTCGACGAAAATTTTTACTTTATGAAATAA
TTTGTACAAAAAAATATGAAAATTATGTAAAAATAAC Coding sequence (CDS) from alignment at sc0000131:118964..123300- >TCONS_00011670 ID=TCONS_00011670|Name=TCONS_00011670|organism=Clytia hemisphaerica|type=CDS|length=2382bp|location=Sequence derived from alignment at sc0000131:118964..123300- (Clytia hemisphaerica)
TGGCGTTTACCGGACAGCGGTTGTGATTTCATCGTCTACTTATTCGGTTT
ATATTTCCTCATCATGATCGTTTTCACCGGAATGATTACGTGGATTGCTA
CGCAAGGTTGTATCGCTCCCGTTTGTGTTACGTTATACACCGTATGCGCC
GTTGCTGTGTTCTACTTTTTTTACTGCTGTGGGTGCGTGGAGTATTCACG
CCGCTACTGGAGGGCGTTATTATCCGTTAATAAGGTATGGCGTATTTATG
GGCGGGCTGATAGTCTAAAAAACTTTAAGCATCAAGTTAAGAAGGGTGAT
TGCAAGACACCAACGAATAATATCTTAACGTCCAATAAAAACGAACCTTT
TGTGATTAATATTGAGACGAAATTGACGGCACCGATTGAAGTATGCGCCG
AAGCCTCCTCATCTAGTTTACAAGAAGACAATAATAATTTGAATGCGGTA
CCGGATGATTCGATGGGCATTGATAATGTTGCTATGGAAATTGAAGATAT
GGAATGTGCATGTGCAAATAATCAAGATGGTAGCAAAGCAATAGTATGAA
TGTCGTCCAACGAAAAAATTGTCGTCATTGACGTGACCTCTTTACAAGAA
TGTACTGCTGAAACGTTGAAATGCAGCGAGAAAATTAAAGCCGAAAGTAC
ACAAAAATGTGACGAAAACAGTACCGAGTGTAAACCAACTTTCAACGAAT
TGTCAACGACAAAAAACGAGGATTTTGAGGAATGCAAAGAGAATCGAGGT
TGTCAACAAGATCGAAATGGAAGTTTCAAATTCTCCACAACAACTTATTG
TGGTACATGTCGGAAAGTGTTGGAAGCAGATTTGGTGGATGGACAGTGCG
AGAAATGCAATAGGAACATTATGCATGAACTTTCAAAAGATGATACTGTG
AGTCAATTACAAATTTCTGTTGATAATCTGGATGGCTGTAGCGAGCAACC
GAGTCCTGCTAAATCAACCACAACAATCATTAGCGCTACAGCCAGTGAAC
GTACATGTCGGATCTGTTTGGATAATATAGACCAAGGGGACTTGATAGCA
CCATGTAAATGTTCAGGATCTACAAAATATGCTCATGAAAGTTGTATGTT
GAAATGGTTTTTCAAATCCAGTAAAAAGTCGTGTGAAGTTTGTCTTGGAA
ATGTCAATGTCAAACCTATCGGATTCAAACCTTTTCAAGAGTGGCGTTTA
CCGGACAGCGGTTGTGATTTCATCGTCTACTTATTCGGTTTATATTTCCT
CATCATGATCGTTTTCACCGGAATGATTACGTGGATTGCTACGCAAGGTT
GTATCGCTCCCGTTTGTGTTACGTTATACACCGTATGCGCCGTTGCTGTG
TTCTACTTTTTTTACTGCTGTGGGTGCGTGGAGTATTCACGCCGCTACTG
GAGGGCGTTATTATCCGTTAATAAGGTATGGCGTATTTATGGGCGGGCTG
ATAGTCTAAAAAACTTTAAGCATCAAGTTAAGAAGGGTGATTGCAAGACA
CCAACGAATAATATCTTAACGTCCAATAAAAACGAACCTTTTGTGATTAA
TATTGAGACGAAATTGACGGCACCGATTGAAGTATGCGCCGAAGCCTCCT
CATCTAGTTTACAAGAAGACAATAATAATTTGAATGCGGTACCGGATGAT
TCGATGGGCATTGATAATGTTGCTATGGAAATTGAAGATATGGAATGTGC
ATGTGCAAATAATCAAGATGGTAGCAAAGCAATAGTATGAATGTCGTCCA
ACGAAAAAATTGTCGTCATTGACGTGACCTCTTTACAAGAATGTACTGCT
GAAACGTTGAAATGCAGCGAGAAAATTAAAGCCGAAAGTACACAAAAATG
TGACGAAAACAGTACCGAGTGTAAACCAACTTTCAACGAATTGTCAACGA
CAAAAAACGAGGATTTTGAGGAATGCAAAGAGAATCGAGGTTGTCAACAA
GATCGAAATGGAAGTTTCAAATTCTCCACAACAACTTATTGTGGTACATG
TCGGAAAGTGTTGGAAGCAGATTTGGTGGATGGACAGTGCGAGAAATGCA
ATAGGAACATTATGCATGAACTTTCAAAAGATGATACTGTGAGTCAATTA
CAAATTTCTGTTGATAATCTGGATGGCTGTAGCGAGCAACCGAGTCCTGC
TAAATCAACCACAACAATCATTAGCGCTACAGCCAGTGAACGTACATGTC
GGATCTGTTTGGATAATATAGACCAAGGGGACTTGATAGCACCATGTAAA
TGTTCAGGATCTACAAAATATGCTCATGAAAGTTGTATGTTGAAATGGTT
TTTCAAATCCAGTAAAAAGTCGTGTGAAGTTTGTCTTGGAAATGTCAATG
TCAAACCTATCGGATTCAAACCTTTTCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011670-exon-sc0000131-1575043694:122415..123300 | TCONS_00011670-exon-sc0000131-1575043694:122415..123300 | Clytia hemisphaerica | exon |
| TCONS_00011670-exon-sc0000131-1575043694:118964..119930 | TCONS_00011670-exon-sc0000131-1575043694:118964..119930 | Clytia hemisphaerica | exon |
| TCONS_00011670-exon-sc0000131-1510915933:122415..123300 | TCONS_00011670-exon-sc0000131-1510915933:122415..123300 | Clytia hemisphaerica | exon |
| TCONS_00011670-exon-sc0000131-1510915933:118964..119930 | TCONS_00011670-exon-sc0000131-1510915933:118964..119930 | Clytia hemisphaerica | exon |
| TCONS_00011670-exon-sc0000131-1491911889:122415..123300 | TCONS_00011670-exon-sc0000131-1491911889:122415..123300 | Clytia hemisphaerica | exon |
| TCONS_00011670-exon-sc0000131-1491911889:118964..119930 | TCONS_00011670-exon-sc0000131-1491911889:118964..119930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:118964..123300 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
