TCONS_00011668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011668
Unique NameTCONS_00011668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011668 ID=TCONS_00011668|Name=TCONS_00011668|organism=Clytia hemisphaerica|type=transcript|length=947bp
ccaaattACTAACACATAACAAAGAAAGTATAAACGGTGGAGTTCTTCTC
CATTTCAGTGCCAATTCGTCCACATTCCTTCTGCGCATGTGTGCGAGGGT
CTTCGCACTTTCCTCTTTCATTTCACTCACGTTTGTCGTAGAAAGTCACT
GGAGGCAGAGATCTTCCAAGCCAATTAGGCTACCTTGTACCTCTTTTTTA
CTTAGTTTTATAtcataataaataaaaatgatcaACACTGTTCGATTGGC
TCCACTCATGAGGCAAGCTGCCAGAGTCACAATGCAACAAAGCAAACAAG
GAGCTGctTTGGCAAGAATGCAACCTGCTattaCCCAAGGACTACACACA
AGTTCAGCAAATCGTGATATCGAACAAGCCGCTAAATTTATTGGAGCTGG
TGCTGCCACCGTAGGATGTGCTGGATCTGGTGCTGGTATCGGAACAGTTT
TCGGAAGTTTGATCATCGGTTATGCTCGCAACCCATCTCTAAAACCACAA
CTTTTCTCATATGCCATCTTAGGATTTGCTTTATCTGAAGCTATGGGACT
GTTCTCCCTTATGATGTCATTTTTGATCTTATTCGGTTTGTAAATGCTAA
TGATTTGTAAATTGGTTAAATAGTACTACTTTCACCCacaaataaattga
aaattccCAATTTATATATTACCTTGTCAGTAATGTTTTATTGCCTCCCT
TTACATCACAATCATAAATTTTCGCAAAGCATTGTGCGTTACCTACCTCA
AGGAATTAATTTTGTCGAGCAGAGACCtactagtagggggaaattttttt
taggtcgctcgattgttttggtcaaatcacttgttatacatttttggaaa
gttaaggggtaggggaatcaaaatgaCTTAGGTTCCAACTTTAGGCAAAA
ATTaaagggtcaaaaattaatgaacattttagcttgagaaaacggag
Run BLAST on NCBI

protein sequence of TCONS_00011668-protein

>TCONS_00011668-protein ID=TCONS_00011668-protein|Name=TCONS_00011668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MINTVRLAPLMRQAARVTMQQSKQGAALARMQPAITQGLHTSSANRDIEQ
AAKFIGAGAATVGCAGSGAGIGTVFGSLIIGYARNPSLKPQLFSYAILGF
ALSEAMGLFSLMMSFLILFGL
Run BLAST on NCBI

transcript from alignment at sc0000131:2749..16080-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011668 ID=TCONS_00011668|Name=TCONS_00011668|organism=Clytia hemisphaerica|type=transcript|length=13332bp|location=Sequence derived from alignment at sc0000131:2749..16080- (Clytia hemisphaerica)
CCAAATTACTAACACATAACAAAGAAAGTATAAACGGTGGAGTTCTTCTC
CATTTCAGTGCCAATTCGTCCACATTCCTTCTGCGCATGTGTGCGAGGGT
CTTCGCACTTTCCTCTTTCATTTCACTCACGTTTGTCGTAGAAAGTCACT
GGAGGCAGAGATCTTCCAAGCCAATTAGGCTACCTTGTACCTCTTTTTTA
CTTAGTTTTATATCATAATAAATAAAAATGATCAACACTGTTCGATTGGC
TCCACTCATGAGGCAAGCTGTAAGTATGATTTACTCCAACTTAGATGTCA
AGTATCTGTAAACATGCACCTGATTTCAATATGGTTACAGGAGGATTTCT
AAACAAACTCTGTATTGTTTTTGTTATCGGCAAAATTTANTATGGTTACA
GGAGGATTTCTAAACAAACTCTGTATTGTTTTTGTTATCAGCAAAATTTA
CCAGAAGAGTATGAGATTTATGGATTTTCTATTAGTATTTCATAAACTAT
CTGGGTTGCTTTTGCTCAATTTTGCTCAATTGCTTAGGTTGCACCATTTG
TAATTAGGTTTCTAAACTTGGTGTCCCTTCCTTCGGGTAAATATATGTTT
TGAATTTGAATTGAATTGAATTTGAAGAGCTCTATCACGTGATATATAGG
TTTTTTTTTGTTATTGAAGACCCACAGAAATCATGACTTTTTGGTCTTAA
GATTGCCTGAAAAAGCAAAAAAATGCAAATTACTCTTGGCGGCAATCACA
AATATTTTCATTTTGCGTCCTCGTTGGTAGCGACTCCAGAAGTCATGCAA
CTTTCGTTGACGTCAAACCAAATGTTTCATTTTTCCGTGAACTTTGAACC
CTTGGAACTTTTATTCAATGTATGCTAAAGCGTTCCGGTTTTTACTAAAT
GAAAGCCCGTGATCTTAGCTTTCCAGCGGTATATAACACTGTGGACACGG
GCTAGACGGCAAATTGGTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACAACTATCGAAGAACAAATGTGTCTGGAAACAGAGGAAAATGTATTT
GGAGGCTGAAACTTTGTATGTTTATCAGAAAAAGGGTGAGGAATTCAAAA
ATCACAATCGCTGCTAATTCTAGTTCTTTCATTTTCATGCAGTTTTTTTA
ACTTTTTTGCTTCTTTAGCATGGGAATGTCCCAAAAAAAAAGTTTTTTTT
TCTGCCGAAATGGATTTTCTTTTCATTTGGGGTTTCTCCTTTCAGAAAAA
CTTATTCTTTACTCATAAGTTTTTGTTCCTCCANAACATTTAAAAACTGA
AAAATTTCTGCTTTGTTCAATTTTATTTAGAAATTATGATTTTCCGTCAC
GGCGCAACGGAATTTTAGACCCCCAAAAAACTCCATTGGACATCTGAAAT
GGCTTAATTTCTTCAGTAACTTCAAAATTATCAATATTTAAAAACATTTG
GTAAGGTAAACTACTTTGTAGCCTTTATATACCCATTTTGTAAAAAATCT
TAATTTTTGTGAGCTTTCCAGGGATTTTAGCCTGGAAATCGGAAATCTGG
TCATAACTTTTCGATGGAGCATGTTCCTGCTCAGATTTTTTCACATATTG
TTCATGAAATGATATTCTTTATGTCTATATAAAAATTTTTGACATTCTGA
AAACTTCATTTTTTGCCATTTTTCAGATTTTTTGGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTC
CATTTCCAGAGGCCCCTTGAAAATGGGTCCTACCACCTTTTTTGACTCAT
TTCAACCTTTTCCAAGCTATTTTCTTCAAAAACAAAAATAAAACAAAAAT
AAAACAATGCAATGTCTTCTTTTTTTCAAAAAAAGATATATCTTTCGTTA
TTTTGATTTAAATATACTAAATATTTTACAAATATTTTTATATAATAATA
ATTTAACACCATCAAAGAATTCTCCCTCCAAATTTGAGGTAGAACTATAT
ATAACATCATGGGGTTTTGTGAATGTGCTGGAAAGATATTGGTTCTTGAA
AGGTCAATAAATGGCCCATTTTGGATTAAAATTTGATGAAACAATGAAAA
TCACAAATATGAATAATATATTATTCTCATCGTATTTCAACATATTGCCA
CCAAAACAATTATTAAATTACTAAATAAAATCATATACTGAAAAATTAGT
ACTGTTTAAACAATATGGACATTTTTTGAAAAAAATGAGAATGAAACATT
TTTGAAAAAAAATCTGTTAGTATTTTTCCTTTGGCTATTTCTAAGGTATG
ACTAAGTCTAAAATTAAATTTTAGCAGCTAAATATTACCAGATGACTTGT
TTGAACATGTCATATAAACATCNCAGATCTTTTTACCCTACCCACCATCC
AAAGGGCTTATGGTGCGTTCAGCTTATCTACTCCTCGACAGGTGCGACGA
CAGGCAGACAGTTTATATCCTATTTTTATCCTAGACCAGCTTTGCATATT
TATGTTTATATTTCAGAAGTAAATAGGTGTAAATAAGATCATTTTCTTCG
TTTGCTCGAAAATTTAATCTCTACAATTGGAACTTGAAAGGTTCTCAGGC
CATCATCATGGAAGCTTTAAAGTTTTTTTAAATTTTTTTTGCTGATAAAT
GGGAGCAGTTTTTTTTATTCATAGACAAATTTTATCAAACGATACCTTCG
TAACTGGGTATTTTATATTTACCTTTTCATATTTCTGTTTATTAAATTGA
TTGATCCATCCAAAAAGGTTTATGGTGATAGTATAGTTTGGTTACAATGA
AATTTTAAAGTCCCTATTTCAAATTTACCTTCTTCAACGATATGGAAATG
AGATAAGTTTATTTAGTTCAAAATAAAAGTAATGGTATTATCAAAAGATA
AGGATTGACATCAACATTTGCAAGAAATCACCTATTTAGGACGCTTAGAA
GGCAAAAATTTTCTTTGTCGCCGAACCATTGAAACCTGTTGAAACTCAAT
TTTTAAGACTAAAACAGTGGTAAGGAAAAGTGCTTGGAAATTACCCTGTT
TGAGCCTCAAATTGTTCTTATCCTGTTCTTATTTATACAGAGTGTCTTCG
GGACCTTGAAAACCTTGAGTTGGGCCAACTGTTATGATTGCTATCATTCC
TCCAAGAAGACCCCTCGCTCTAAGCTTGGATTTTGTGGAAAAAGGCTTGA
AAACAACTATCGATGTCAGCAGCTTAAAGTAGAGAACCGCTTCTCAATAG
TGTTTAGATCATTAGTGCATGCCTGAAATTAGCTTTAATTACAAAGTTGA
ATTTGATTTTGAAAACTGTATTGAGGGCAACCTGACAGCTTATACACGTT
TTTTTTTTTTAAAAAACACACTTTTAAGAAACATGAGGTTCAGAATGCCT
AAAAACTAAGAAACATCTAAGAAACATGCTGAGGCTGAGAATGAGAAAAT
AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
AGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCCGATTTCTTAAGAAA
CATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAAAAAACGTGTACT
TCACATTTTATAATATTGCAATAATCCATCCTGATGCCCGTAGGATTGAA
ATTCACGAACGTTTATTTATTTGCAAAACATTCTTGACAAAATGGTCAAT
ATGTGAAACTTCTGATACACTTTGCTTGATTTACTTTCACTATCAATCGT
AATTCATTTTTTGTGGGAAAAGCTAATATCAAATATAACTGATTATTTCA
AAAATATATTTCAAACCCAAAAAATTTAAAAATCCATAACTCGTAGTTTC
ATGCTCTAAGCAATCATCAGATGTAACTAAAAATTAAAAAGCTGTGTGAA
AACATATGTTACAAAATTGGTAAAATGCTGATTATAAAGTCATAAAAAAG
TGATAAAATCGTAAAACTATGAATTGTCACGAGGGACATCAAATGTGTCC
GGAGGGACGTCTTTAAAGTTTTTTAAAAAGAATTTGCTCATATGACGGCA
CGTGGAGATTAGTTCGGTTCTTTTGTTTATAAGTTTGTCTTTGGAAGTAA
TTATGCGGTACTTTTCGGTCATGCAAAGGTTGCACGCTTGGCGTGATCGA
TGACTTTCCAGGATAACAGGGCAAAATGTTTTTGCGCTGTAGTTTGTTTG
TGTTGGTTCCATCTCGTTTTGAAGGTATTTTCGGTAAGGCCAGGGGGGGT
CGGTAGTAAAATCTCAGACATAATGACGTTTACTACGGTGGTGGTGTGAC
GAAAAATTGAAAAAAACTTTTACTACCCAGGGTAGTTAAATACTAATATG
GGTGGTATCTATGTGTTAAATGTTGAAAAAAATTTACTACCTGGGTAGTT
AAACTGGTAAAATTAGCAAATTTTAGCTATATTATTGTAATTCTCTCAAT
TTTTTGGATGACTTTTCCGAAAAAATCTGAAAATTTTTATAATTTGAAAA
AATTTTCTGTTGGAAAGTTGTTTGCTGCAAACAAAAAATCTTCGAAATTT
TTTGTCAATATAAAAAAAGAGTTTCATTCTAAGGGCAAAACATTAATTTT
TGCACTAAGTGACAAATGTGTCACAAAAATAATCATTTTTTAGCTTTTTT
TGCAAAATCAGTCCTAAAAGCAACCAAAAAGTAGGTGGTCTCCATGACAA
ATTGTCCCAAAAACTTTTACTACCAGGGTAGTAAAATACCTCTTCCAAGA
GTCTGGGTGGTGGTATGTAAAAATTCGTAAAAATCCTTTTACTACTCATA
TATGTCTGAGATTTTACTACCGACCCCCCCCTGGTAAGGCCGATGTAGTT
GACAACCCCGTTGTCTGGGGAGGATTTTACCGTGCATCGGTATATTAAAT
GCCTATCCAGACAGTTTCCGTTTAGAGGACACATTCTTTTTTTTTTTGGA
CCTACCTGGGGGTCCTATAAATTAACCTTTGTCCGTCTGTTTGTCCGTCC
GTCCGTTAGTTACCAGCTTTTCTCGAGATTTCATCATTAGTTTTTTCTGA
TTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAATGTGATGGAGCCC
GATCTTCGACGGAAATTGCCGTTTTTCTGGATTTTCATTGGACTTTTTCC
ATATAACTGGTTGTTTTTTCACTCAAAAACATTATTAATAGCAATGTTTC
AATTTTCAATAGGATTGATTTTTGAAGCCAGAACTTTCTAAAAATCACCG
GAACAGCTGATTTTCGCTGGAAAAACGGTATTTCTTGAATTTCTTGAGCT
GTACTTTATATTTTTTCATGAAATTTTGCACACTGATGCAAAATGTCATA
CCTAAATTGTGACAGAACCCGATTTTCGAAAAACATCTTTTTCCGGCCGA
AAATGCCGGAAATATTTCGGAAAAATCGGCTTTTTGACATTTTCTCGAGA
TTTCATCATTAGTTTTTTCAGATTTTTTGCTCAAAGATGCGTATTAACAA
TGCCCGAAATATGACCTAGTTCGATTTTTGAGAAAAAAATTTTTCCGGTT
GAAAATGCCGAAAATCGCCATTTTTGCATATTTTCATTGGATTTTCTCCT
TATATTTCTATGTTTTTCACACAAAAACATTATTGATAACAATGCTCACC
ATAAAGCATGATTCAATTGTCAATAAAACTGATTTTTGCAACCAGAACTT
TCTATTTATTTTTCCCCCCATCAACAATCAATGATGAATTTATTGCGTTG
TGTATTTTCGGTAAACACTATATTTTCTGACTGATTTTTTTTTCATTTTT
CTCTTCGCATTGCTCTCTAACTTTCATCATCAGGTAGGTCCATTCAGCAT
GTTGCTTTTTTTTTTTTTTTTGGTTTTATCGAGCACTCTTTGAATATGAT
TTCACCTTATTTGATTAACTGATTATTTCTAAAGTTTCTACTCGGAGTTT
GTGGTACCACAATTTGTCCACTCTTTAATCAAAATCATAAAAATGTTCAT
CAGGGCTACTTTTTTAACAACATTAGCTTGCAGCTTGTAAATTTGTTGCA
GTTTTAACACAAAGTAGTTTAAACTGTAACATAAATTTCCGTACATAGTT
GAGTGACCACAGCTAATTTCATACTGGTAAAGGGAAATCAATGTTGTCAT
AATCTACAATCCCTGGACAGTCGTAAAATTACATTCTTTCTTATTTTAGG
CCAGAGTCACAATGCAACAAAGCAAACAAGGAGCTGGTATGTAATTATTT
AATTTGTTGTACCAATATCAACTTTAACAAGACTAACAAGATTTAACAGT
AAATGGAATGTCGAATGCCTTCTATAACAGATATGCAAAATAGATACAAT
GGAAGGTTAGGGATAGCAGGTCAACTTTGAAAACCCCAACCTCAAAACAT
GATTGGTAGCAGATTGACAAATATGAATGGGCTCTTCCAGAAAATGTCCG
TACATGGAGGTGGAGGATATAGTATCTGGGGGTAGTAAAAAACCTTCAAG
ATTTGACACTCCCCTCCCCATATTCAAATTTTTCTTGAAAAGCCCAATGG
TTTCAATCGTAATATAAATTAAAACAATTCACCAATGCAAGTTTGTGTCT
TCTAACCGTGAACTGATAGTATGTGCTGAATAAACAAGTTTCTTTTATAT
ATTTTTGTTTGTTTTAGCTTTGGCAAGAATGCAACCTGCTGTAAGTTATA
CATTTTTATTCTGATTGGTAATTTAATCATCTATATCAATTATGGGGCCT
TGAGGTGGTAAAAAGTTTCCCTACAAAACAAGGGTCGACTAAAATATTAC
ATTTTTCAAATGAGCCTAGGAATGTTACAAGAGTAAAGTTGGGCTAGTTT
GGTCAGCCTGTTAAGATATTGTGCAATGACGATTAGATGTAGGGCAGCTC
AGTGTAGATTACATTTTCTATTTTAGATTACCCAAGGACTACACACAAGT
TCAGCAAATCGTGATATCGAACAAGCCGCTAAATTTATTGGAGCTGGTGC
TGCCACCGTAGGATGTGCTGGTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNACGTACTTACCAGGAGGGGGTATA
GCCATTTACGTACGCTTGCGTACAGGGAGATGGCCCATAGTTCGTACGCA
CTAAAATGTCGAAAATAGAGTACCCCCTTCCCCTTGAATTCAAATCGTTT
GGTTCGGACCTTTATTTCACACATGAAACTTAAACTCAATGTTCATTAAG
AAACTTTTTCTTTTCCTTGATGCGTATAAGAAGCGTAAAAGAGTCTGTTA
AATGACGCGCCTTACGCGCCCACGCGCCTTCCATTTATTGACGCGCCTTA
CGCGCCCACACACCTTACGCGTCTGAATTTTGACGCGCCTTCTTACGCGC
CTTATCGCGCCTTATCTTATATGTTATTATTTTGATTTATTATTTGTACT
GTTCTTTTAGGTGTTTTATGGGCTACTTTTTATTATCAATAGCGCCTCTG
TAAAGATAATTGAAAAAAGTGTTACGAGTCCAAACTTTATTTTGTTGAAT
ATTTTACTTCTTCGACCTCAATCAAACCCTGAATTTATATTGTATGATTT
TCTTCATGGATTTTTCGAATGAAAATATTCTAGTAGGAGTTTCATTTATG
AAATTTATGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGTCCCTTACTTGCTT
TGAAAATACTGCTTACCGAAAGCCTAATCCCCTCAAATCAAAAGTTATTG
ATTGGTTTCTTATAAAGAAGATGCTTATAAGAAAAACAAATATGCTGACA
TTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGTTTAAAATG
TGTTTTCTGACTGATGTAACCAACAAAAATATGGCATCTTATACATTTTC
TGTTAGACAAACTATTCCTGAATCTGAAAATTCAAAAATCTCATTGAAAA
AATTTGATGAAGAAGAAAATGAAGACTTTTGCGAGGAAGAGTATTTCAAC
TTCGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAAAATTTTCG
CAGTAGATGGTGTATCTTTTACCAAACAATAAAAACTTTTGCGGAAATTT
TTTTTAAATGCTTCTTTCTCTCGAAATCTTCAAAATAGTGGTTTTTCATC
AATTTTTCATCTGGATTTTGCTTAAAGTTCATAACGTCATTTTTCCAATA
AGTTCTTAATTACTCTTAAGGGGTTTGATTAAAAAGCAATTTATAAAGGC
AATTCTTTGTTAAATGTGTTAAGGAATCTAAAACATAACTTTTATATTCA
GATACTAAAATCTATTTTCTGACTATGGTCAGAGCCCTTAAACACAATTC
CTTACTTGCTTCGAAAAGAACTAATAGCGAGGTTGAATATCGGGTTTGCT
CTAGAACACGTTTCCGTTCAGTTTCTTGTTCTAGAGCAAATCCGATATTT
TTGCCTGGGGTATGTCTGCCTAGCTTTCGGGTTAGCCTGAAGAAAAGTGC
CGTAGCGCGAACAAAGGCTTCAAAAATTCGTCCGTCGTCCTGAGTTATCT
ACTGATACTTAACCTCAGTGCGCGTTGGTAATAAGGCAAGTAAGTAAGGC
GCATCAAAAATTTAGGGCACATCGATAATAAGACGCGTAAGAAGGTGCGT
CAAAACTTAAAGGCGCGTCAAAATTCAGGTGCGTAGGGCGCGTAAGGAGC
GTGGGCGCGTAAGGCGCGTCATTTAACAGACTCAGCGTAAAAGTCGAGAA
AAAAAACAAGCAAAGAAGGGCTATGAAAACATTTTTCTCTGCGTACGTAC
ATTTTCCCTTAACCCCTCCCCCTCTACGCAAGCATGCGCTTTTGAGAAGA
CTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTAGTGTGTACGTACT
ATGTGGACGGCCCCATGTGGACAGCCCTCAAGTATAAGATTTCTTTTGGA
TTCAATTTTTGTAGTAAACATTCTTAGTGATCTCACAAATTTAAATCTCT
GAAAAATTAATCTGATTTAAAGTTTTGAATTTAAATGTTTTGATTTTCCT
AAACTTGAATTCATTGCACTAGATGTAAAAAATTCATTATTTTTTCCCAT
TCTTTCAGGATCTGGTGCTGGTATCGGAACAGTTTTCGGAAGTTTGATCA
TCGGTTATGCTCGCAACCCATCTCTAAAACCACAACTTTTCTCATATGCC
ATCTTAGGATTTGCTTTATCTGAAGCTATGGGACTGTTCTCCCTTATGAT
GTCATTTTTGATCTTATTCGGTTTGTAAATGCTAATGATTTGTAAATTGG
TTAAATAGTACTACTTTCACCCACAAATAAATTGAAAATTCCCAATTTAT
ATATTACCTTGTCAGTAATGTTTTATTGCCTCCCTTTACATCACAATCAT
AAATTTTCGCAAAGCATTGTGCGTTACCTACCTCAAGGAATTAATTTTGT
CGAGCAGAGACCTACTAGTAGGGGGAAATTTTTTTTAGGTCGCTCGATTG
TTTTGGTCAAATCACTTGTTATACATTTTTGGAAAGTTAAGGGGTAGGGG
AATCAAAATGACTTAGGTTCCAACTTTAGGCAAAAATTAAAGGGTCAAAA
ATTAATGAACATTTTAGCTTGAGAAAACGGAG

Coding sequence (CDS) from alignment at sc0000131:2749..16080-

>TCONS_00011668 ID=TCONS_00011668|Name=TCONS_00011668|organism=Clytia hemisphaerica|type=CDS|length=1830bp|location=Sequence derived from alignment at sc0000131:2749..16080- (Clytia hemisphaerica)
GATCTGGTGCTGGTATCGGAACAGTTTTCGGAAGTTTGATCATCGGTTAT
GCTCGCAACCCATCTCTAAAACCACAACTTTTCTCATATGCCATCTTAGG
ATTTGCTTTATCTGAAGCTATGGGACTGTTCTCCCTTATGATGTCATTTT
TGATCTTATTCGGTTTGTAAATTACCCAAGGACTACACACAAGTTCAGCA
AATCGTGATATCGAACAAGCCGCTAAATTTATTGGAGCTGGTGCTGCCAC
CGTAGGATGTGCTGCTTTGGCAAGAATGCAACCTGCTGCCAGAGTCACAA
TGCAACAAAGCAAACAAGGAGCTGATGATCAACACTGTTCGATTGGCTCC
ACTCATGAGGCAAGCTGATCTGGTGCTGGTATCGGAACAGTTTTCGGAAG
TTTGATCATCGGTTATGCTCGCAACCCATCTCTAAAACCACAACTTTTCT
CATATGCCATCTTAGGATTTGCTTTATCTGAAGCTATGGGACTGTTCTCC
CTTATGATGTCATTTTTGATCTTATTCGGTTTGTAAATTACCCAAGGACT
ACACACAAGTTCAGCAAATCGTGATATCGAACAAGCCGCTAAATTTATTG
GAGCTGGTGCTGCCACCGTAGGATGTGCTGCTTTGGCAAGAATGCAACCT
GCTGCCAGAGTCACAATGCAACAAAGCAAACAAGGAGCTGATGATCAACA
CTGTTCGATTGGCTCCACTCATGAGGCAAGCTGATCTGGTGCTGGTATCG
GAACAGTTTTCGGAAGTTTGATCATCGGTTATGCTCGCAACCCATCTCTA
AAACCACAACTTTTCTCATATGCCATCTTAGGATTTGCTTTATCTGAAGC
TATGGGACTGTTCTCCCTTATGATGTCATTTTTGATCTTATTCGGTTTGT
AAATTACCCAAGGACTACACACAAGTTCAGCAAATCGTGATATCGAACAA
GCCGCTAAATTTATTGGAGCTGGTGCTGCCACCGTAGGATGTGCTGCTTT
GGCAAGAATGCAACCTGCTGCCAGAGTCACAATGCAACAAAGCAAACAAG
GAGCTGATGATCAACACTGTTCGATTGGCTCCACTCATGAGGCAAGCTGA
TCTGGTGCTGGTATCGGAACAGTTTTCGGAAGTTTGATCATCGGTTATGC
TCGCAACCCATCTCTAAAACCACAACTTTTCTCATATGCCATCTTAGGAT
TTGCTTTATCTGAAGCTATGGGACTGTTCTCCCTTATGATGTCATTTTTG
ATCTTATTCGGTTTGTAAATTACCCAAGGACTACACACAAGTTCAGCAAA
TCGTGATATCGAACAAGCCGCTAAATTTATTGGAGCTGGTGCTGCCACCG
TAGGATGTGCTGCTTTGGCAAGAATGCAACCTGCTGCCAGAGTCACAATG
CAACAAAGCAAACAAGGAGCTGATGATCAACACTGTTCGATTGGCTCCAC
TCATGAGGCAAGCTGATCTGGTGCTGGTATCGGAACAGTTTTCGGAAGTT
TGATCATCGGTTATGCTCGCAACCCATCTCTAAAACCACAACTTTTCTCA
TATGCCATCTTAGGATTTGCTTTATCTGAAGCTATGGGACTGTTCTCCCT
TATGATGTCATTTTTGATCTTATTCGGTTTGTAAATTACCCAAGGACTAC
ACACAAGTTCAGCAAATCGTGATATCGAACAAGCCGCTAAATTTATTGGA
GCTGGTGCTGCCACCGTAGGATGTGCTGCTTTGGCAAGAATGCAACCTGC
TGCCAGAGTCACAATGCAACAAAGCAAACAAGGAGCTGATGATCAACACT
GTTCGATTGGCTCCACTCATGAGGCAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006546XLOC_006546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011668-exon-sc0000131-1575043694:15812..16080TCONS_00011668-exon-sc0000131-1575043694:15812..16080Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1575043694:8745..8781TCONS_00011668-exon-sc0000131-1575043694:8745..8781Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1575043694:8291..8313TCONS_00011668-exon-sc0000131-1575043694:8291..8313Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1575043694:7961..8054TCONS_00011668-exon-sc0000131-1575043694:7961..8054Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1575043694:2749..3272TCONS_00011668-exon-sc0000131-1575043694:2749..3272Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1510915933:15812..16080TCONS_00011668-exon-sc0000131-1510915933:15812..16080Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1510915933:8745..8781TCONS_00011668-exon-sc0000131-1510915933:8745..8781Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1510915933:8291..8313TCONS_00011668-exon-sc0000131-1510915933:8291..8313Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1510915933:7961..8054TCONS_00011668-exon-sc0000131-1510915933:7961..8054Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1510915933:2749..3272TCONS_00011668-exon-sc0000131-1510915933:2749..3272Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1491911889:15812..16080TCONS_00011668-exon-sc0000131-1491911889:15812..16080Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1491911889:8745..8781TCONS_00011668-exon-sc0000131-1491911889:8745..8781Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1491911889:8291..8313TCONS_00011668-exon-sc0000131-1491911889:8291..8313Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1491911889:7961..8054TCONS_00011668-exon-sc0000131-1491911889:7961..8054Clytia hemisphaericaexon
TCONS_00011668-exon-sc0000131-1491911889:2749..3272TCONS_00011668-exon-sc0000131-1491911889:2749..3272Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011668-proteinTCONS_00011668-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:2749..16080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
890.164	922.758	1067.33	1157.75	668.191	537.081	634.121	690.864	907.587	888.255	936.972	1075.55	909.244	988.186	908.537	980.771	1670.77	1624.56	573.012	554.215	1390.71	1436.78	966.022	921.4	782.566	828.322	1240.76	1158.86	822.553	732.208
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000454ATP_synth_F0_csu
IPR002379ATPase_proteolipid_c-like_dom
IPR020537ATP_synth_F0_csu_DDCD_BS
Vocabulary: Cellular Component
TermDefinition
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO:0015991ATP hydrolysis coupled proton transport
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
Blast
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BLAST of TCONS_00011668 vs. Swiss-Prot (Human)
Match: AT5G2 (ATP synthase F(0) complex subunit C2, mitochondrial OS=Homo sapiens GN=ATP5G2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.426e-31
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:  333 TQGLHTSSANRDIEQAAKFIGAGAATVGCAGSGAGIGTVFGSLIIGYARNPSLKPQLFSYAILGFALSEA 542
            ++   TS+ +RDI+ AAKFIGAGAATVG AGSGAGIGTVFGSLIIGYARNPSLK QLFSYAILGFALSEA
Sbjct:   56 SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
The following BLAST results are available for this feature:
BLAST of TCONS_00011668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AT5G24.426e-3182.86ATP synthase F(0) complex subunit C2, mitochondria... [more]
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