TCONS_00011667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011667
Unique NameTCONS_00011667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011667 ID=TCONS_00011667|Name=TCONS_00011667|organism=Clytia hemisphaerica|type=transcript|length=1266bp
TTCAAAAATCTGCCTCTTCATTTATCAACCTAGAATGCCATGAGTTCTTC
CTTTAACTTATCAAGATGGGAAGTTGGTTATCATTCGATCGAGACAGTGG
ATCTGTGGAGGAGGTCAAAGATTATTGTAAATCCGTCATCTTCGTCAAAT
TCTATGGACAGACCAGCTCCATGAAGGGTGAAACGGATAAAACGATTGAC
GCGATTGATGGATGTGAGAACCTCGGATCACTCATCAAAGAACTTCACGA
GGAAgtagcaaaacaaaaatcagcaaaaaatttcgagattaCTGATGATT
TTCGATTGATTTTACGAAAGATTGCTAACTTGCGATTGTGTAATAAAGAT
TGCGAGACAGCAGATCATTGTTACGAAAGATTGTTGAAAAATGCAGATAT
GTTTGCGGCTATCTACAAGAAACGAGGAAAGTTATCACAGGGACTTTCCG
AAGAACACGACCACTATTGGGGTACACGTCAACAGATGATGTGCGGAAAA
ACTATCGCTGATTGGTTGGAAAAGAGGGAAAAGAAGGCCAAAAACTCCAC
TTATGATGCCGATTCATTTGATCCCATCTTTGGCGTTTTGTTGAATCCAA
CAGGAGGTCGGGTTGGTCCGGGAGACACAAATTGGATGCACGAGGCTTTA
TTTGATGATCTTGGTGCCTTTGCATACCATTCTGCTGTTCATGATGGTTT
TGGCTACCTAAAAACCAACCACAGTACTGGACCTGGGTACAATTACCTCA
ATAAGGGTCTCTTTGGTGACAGCAGTCCTTTGGGAGGACAAATCAGTGGG
ATTTCATTCTGGGAATCAACATTAGATGATGAAAAACCTGAAGATGCACC
ActtgacaaattcaatttcaaataattttatgGGGGGTAGATAATTCAAG
CTCAGTGCTATACTATGGAAGTCAATTTTCCAATTGGGAGAAGGTTGCGt
tgaaaagtaacaaaattttgaccacatTCACCTGGTATTCTCTTGTATGT
AAATATCAAATTAcagaatatttatttttaatattattcaTTCTTAGAAA
TATACATTTAGAGACATGTTTTACATTTTGTAGAGAATTTATTCCATTTT
ATCATCTAGAATTATTTCATATACATTGGAAATATTTTCTGAATTGCTTT
TGTCCGCTTCTTTAGAAATTACATAAATCAAGATTCCCTTAAatattttt
agtaatttttataTTCTGTGCTTGATGACGTTGATGACgtcaattgaaaa
aaaatttaaaatcaac
Run BLAST on NCBI

transcript from alignment at sc0000131:482963..489337+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011667 ID=TCONS_00011667|Name=TCONS_00011667|organism=Clytia hemisphaerica|type=transcript|length=6375bp|location=Sequence derived from alignment at sc0000131:482963..489337+ (Clytia hemisphaerica)
TTCAAAAATCTGCCTCTTCATTTATCAACCTAGAATGCCATGGTAAaaca
ctctctataattcgattaTCTCTGTCATTCGAACAAACAACAAACTTTAC
TTCCCGTTGGagttcgaattagtgagagttAACAGTGCCACTCAATagtt
cttttctgtttttgtgactttttagAGTTCTTCCTTTAACTTATCAAGAT
GGGAAGTTGGTTATCATTCGATCGAGACAGTGGATCTGTGGAGGAGGTCA
AAGATTATTGTAAATCCGTCATCTTCGTCAAATTCTATGGACAGACCAGC
TCCATGAAGGTTTGCACCACCAAGTGTTTGGAAATACACTCTTCTTATAA
GTCTGTCTCAGTATAATCTGCAGCGGAAACAAAAAAGGCTGGTGATTTTC
GTAAAATTAGAATTATGAACCAGTCTAAAATTGCTATCTAATTTGAATAT
TCTATCAAAACTTTCACTTTTCGTTGCCGCTGCAGGTTGTATCGAGAAAG
ACTTTAGATAATTCCAAAATCAATGAGCCTTCTTTTCAAACGGAAGCTAA
CTTCAAACAATATTTATATACTCAATATATATTTTCAGAAGACCGTTATC
GATTTTGATACTAAATATGTTTGTCTAATGACGTTTAAAGTATTTTAGCA
ACAAGACAAGACTTTAAACGAGAGCCGTAATCAGTAGCGTGGTCGAAAAA
ACACTGGGGagtcaaaatagaaaaatttgcaatttggTGCCCCTTTTCTA
GGACAAATTGTGGGAAATGACGCGAGCGAAACGAGCGATCTTTcgaaatt
tttcctttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNacatatactaattcgtgagtttccacaaaaaaaagttag
ttctaagatgtgtgtcacgaaaatcgttttctagccacttttttcgatct
cagcagcgggactatacTGTATATCTTGTTCATTGAAAGGGTGAAACGGA
TAAAACGATTGACGCGATTGATGGATGTGAGAACCTCGGATCACTCATCA
AAGAACTTCACGAGGAAgtagcaaaacaaaaatcagcaaaaaatttcgag
attaCTGATGATTTTCGATTGATTTTACGAAAGATTGCTAACTTGCGATT
GTGTAATAAAGATTGCGAGACAGCAGATCATTGTTACGAAAGATTGTTGA
AAAATGCAGATATGTTTGCGGCTATCTACAAGAAACGAGGAAGTAAGTAC
GGGTTGTTTGGTGCCTTGATGATTCAGTTACAACCAAAGAAACCCGGTTT
GGAGCCAAAAGGCTTACAATCTGTACTTTTTTTCTGACCATATGATCAAT
AGCCATTGCTGGACCGTGAAGTTTAAGATTTATTACGAAAATATTGGTTT
TAATCTCGCATAGTCTGTCTGAATGGTATTAACTTGAAAGGCTATGATCC
TAATTCTCTAAAATCGGTGTACTATACAAttagtgccataacatattggc
aattttggctattttaccattttttgaaaattgaagttcgagcgagagtg
tcaatttcgggccttcaactcGATTTTATCGAATATTTCGATCTTGGAGg
tatttattggtttctagaatatattatttcaagccctaccggaccatttt
tgaagttttggatcctcagatcctaaggtcctcctaagtcttaagtctag
cgttaaaactcagagttaaactCTACCTTTCCAACCTAATTTGGAGCACC
Tacaaattgtttgtggttataaaatttcgtggggaatttcccttttgtgc
caagtattttggaaaCGATTGTAGTTTACAGCGACATCAAATTGACGATG
ACGATATTGAAAGCAATATATAGAAAGTAGTAGATGATTCTATCAAAGAG
TGATCGATGACCAGGACTAGAGCTTCATAATgtgtacaagaaaaaacaaa
attgaattaTGGTATTGAAAGCATCACAATCATTTCTTTTCTCATATTTG
ACTGTTTGCCATGATATGGCCTAGCTTCATATGTAATTGTCATAGCTTCT
TGGAAAGTCGATACTTTACGTAATAGCCCAGTAATCAAGGACTTTTAACT
CCTGGCTTGTACCCATGACGGCTCAGACTAGTCGGTCTTTTTCTCCATAT
GCAGGTCTATTTATCCTCTTCTCGTCCACTTATGATTaaattttaacata
tttttctACAGAGTTATCACAGGGACTTTCCGAAGAACACGACCACTATT
GGGGTACACGTCAACAGATGATGTGCGGAAAAACTATCGCTGATTGGTTG
GAAAAGAGGGAAAAGAAGGCCAAAAACTCCACTTATGATGCCGATTCATT
TGATCCCATCTTTGGCGTTTTGTTGAATCCAACAGGAGGTAAGACTATAG
CgatgatatttttggaaatatggAGAGTGGTCAATGTTTTGGTGGCGGTC
GGCAGACCCTTAACCCTAtacatactaggcttttagggctGGTTCATTAC
AACCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTCTTTGGAGGCGTTCCCTGC
TCAGGGCTgactaataaaataataaaaataataaaaatttcctAAACTTG
ACACTTCTTCCATCTTTGCTTGGGGGGATTGGAGATTGGTCGGGGGGTAG
CCACTCTTCAGGACTGGTCTTGTACTTCTCAGCTGTTGGTGGAGGGATCA
TCTTCTGCTTTCCTTGGGATACTTTCTGGGGTGATTATGGTGGCAGCGGA
ACTAGCAGGTTCCACTAATACTTGTGGCTTGATGATAGTGGATGACTGGT
AGTGGTGTCATCCCCAGCTGCCTGTGGTGGTGGTTTAGCAGGCGTTAAAA
GttcatttgtttgttttgagGTTATTTGGTGTGTCTTCTCAACCACCAGT
CTCTTTGTTTCTCCTTTGGTGGTCATATTTAGTAGGTCAGCAGACTCTCT
CTCCTTTAAAAATGAAACGATTTTTTATAGAACTTTCTACACCTTTAAAT
TTCGACCCGGTAAGAAGAGAACTCGAATTTTAGACCTCATTCAGATGAAA
GTTTaacaaggaaaatttttaagaaagaaagcaaCTTTTGTTACAGTGAA
AtctgtttctaaaaaaactgaaaattgattGTGATTTTAGGGATAAAAAA
AAGACAGGCAAGGCGGAACGATGCCTGCGGTACTTTTAGAATACTTACGG
AGTTTGCGTAATTTACCTTGTACGTCATTGcttcttttttcataaaaaaa
ttcctgAAAGATACTGAGaaaaggtcaaatttaaaaatctcatACGACAC
TCAAAATCAGCAACTGCATGAGCGAATTCCTATCGAATTTCGCAACCCAC
GCGATTAGATCAGCAGCGTTTATCTAGAATTAAACTCTGATCTAATATAC
AAACATCGTTCTTTTTTGTTTAGACAGGTGTTTGTTCTGTTCGTTTACAA
ACACCCGTAGTCTAGCGGCTTCAATTTTCGTTTATCAAACAATCTCTACA
CACTTGCTGcattaactgaaaaaaaattctcattttctatttttgcgacc
aaaagttcaaaaaaaacaaaaaaaattgaaaaaactaaaaaagaaaaaaa
aatatctgaaacTTTTGGCCCATACTTCGAGTTTAAAACCTGGACGCTTG
GGTCCCGAAGTACATTGTCCACTCCCTATAGCGgaatgaaaatctcaata
ttCTCAAATCACATCTCCGTGAAATCATTTACTCTAGATGTCTCAATACA
TCAGTTACTACAGGATCTCAATATCCTCAAATTATATCTCAATAAAACCG
TAAACTCTGAAAGATGTCTCAATACATCAATTTCTCATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGGGATA
TGCAGTAAAAGATAACCTTCCTTACAGGTCCATGCGATGGAATTCTACAG
AGTATCTGGAACCCCACCCCAAGAAAGGAAGAAATCCTATAGAACCCTTT
CCCTAGACTCGGGAGTGATTTCTTAATTCTTTAGCTTCGGGTGAAAAGAA
AAGTAATCATTAGCCAGTAAGGCtttaagaaacaaaagaaagaccaCTGT
TTAATTTCGTTGGGCGCCAATGTACTGGCGGCTTACCCGGGTGCTGCCTA
GCAGACGAATAAGACGCAGCGAGTGAGTGAGTCTAGACTACGAAAGGGAC
GGGCTAGAGGAACCTAGGGGAGTAGAACCTAATCCTATTTGCAGACAGGA
ACGGGAGACTATGCAGTTACAATAAACTAATATTTAATAATGACAACGCT
CTACAATCGTGTTATAAATAAGAAAAGGATACTTACAAACCTATGTCCTG
AGCAGGTCCGCCGCCGATCGCTGCCGAAACAACACTAAAGTTTAGGAGGG
CTGGACAGCAATTNTAAGTTGCTGCCCAGTGGAGCGTGGAAGGCGTAGTT
GGGCGTTAGAAGGGCGCTAGATACGATCAGTAAAGGTATAGCCGAAGGAA
CTTTTTAGTACATATTCCTACCTCACTGTACAGTTTAATAGGACCTAATT
TGGATTTCCAGCGTATGTTCTATTCATATCGTATGAAAAGTCCAATTTTC
TACCAAACCCTCTCCGTTCATTTATGCTCGGTATATCTCAAAATGAACTC
TCATAATTTCTGTAGGTCGGGTTGGTCCGGGAGACACAAATTGGATGCAC
GAGGCTTTATTTGATGATCTTGGTGCCTTTGCATACCATTCTGCTGTTCA
TGATGGTTTTGGCTACCTAAAAACCAACCACAGTACTGGACCTGGGTACA
ATTACCTCAATAAGGGTCTCTTTGGTGACAGCAGTCCTTTGGGAGGACAA
ATCAGTGGGATTTCATTCTGGGAATCAACATTAGATGATGAAAAACCTGA
AGATGCACCActtgacaaattcaatttcaaataattttatgGGGGGTAGA
TAATTCAAGCTCAGTGCTATACTATGGAAGTCAATTTTCCAATTGGGAGA
AGGTTGCGttgaaaagtaacaaaattttgaccacatTCACCTGGTATTCT
CTTGTATGTAAATATCAAATTAcagaatatttatttttaatattattcaT
TCTTAGAAATATACATTTAGAGACATGTTTTACATTTTGTAGAGAATTTA
TTCCATTTTATCATCTAGAATTATTTCATATACATTGGAAATATTTTCTG
AATTGCTTTTGTCCGCTTCTTTAGAAATTACATAAATCAAGATTCCCTTA
AatatttttagtaatttttataTTCTGTGCTTGATGACGTTGATGACgtc
aattgaaaaaaaatttaaaatcaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006545XLOC_006545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011667-exon-sc0000131-1491911889:482963..483004TCONS_00011667-exon-sc0000131-1491911889:482963..483004Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1510915933:482963..483004TCONS_00011667-exon-sc0000131-1510915933:482963..483004Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1575043694:482963..483004TCONS_00011667-exon-sc0000131-1575043694:482963..483004Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1491911889:483138..483271TCONS_00011667-exon-sc0000131-1491911889:483138..483271Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1510915933:483138..483271TCONS_00011667-exon-sc0000131-1510915933:483138..483271Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1575043694:483138..483271TCONS_00011667-exon-sc0000131-1575043694:483138..483271Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1491911889:484052..484304TCONS_00011667-exon-sc0000131-1491911889:484052..484304Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1510915933:484052..484304TCONS_00011667-exon-sc0000131-1510915933:484052..484304Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1575043694:484052..484304TCONS_00011667-exon-sc0000131-1575043694:484052..484304Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1491911889:485274..485450TCONS_00011667-exon-sc0000131-1491911889:485274..485450Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1510915933:485274..485450TCONS_00011667-exon-sc0000131-1510915933:485274..485450Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1575043694:485274..485450TCONS_00011667-exon-sc0000131-1575043694:485274..485450Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1491911889:488678..489337TCONS_00011667-exon-sc0000131-1491911889:488678..489337Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1510915933:488678..489337TCONS_00011667-exon-sc0000131-1510915933:488678..489337Clytia hemisphaericaexon
TCONS_00011667-exon-sc0000131-1575043694:488678..489337TCONS_00011667-exon-sc0000131-1575043694:488678..489337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:482963..489337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	5.77248	5.53831	53.2885	17.4309	38.9696	50.1067	18.5889	13.1837	18.7121	18.7975	1.5655	3.81839	13.3252	6.4166	0	0	0.808257	1.12011	0.338116	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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