TCONS_00011659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011659
Unique NameTCONS_00011659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011659 ID=TCONS_00011659|Name=TCONS_00011659|organism=Clytia hemisphaerica|type=transcript|length=1288bp
TGCGAATAAGACCAATACCTTGATtagccttttttattttttcatcaagg
tgacggtcaaaggccagcttttgatcaagtatgagaccaagatgtttttg
atgatcctGAACTACAATGGCTGCATTATTGAACATTGTTTGGAGGATCA
TTCATCACGGATGGCCAAACCGAGATCAAGCTCACCAGTGAGCTATATTT
CCAGTTCATCTGAGGATGATATTCAGCTCAACGATAAAAACACACCCACA
CAAGCACAGCAAACATTAAAAAGTCAAATCACCTCAGTAGATCCAATGGT
ACTGCCTGAGATCGAAGAGCAAGCGAAAATTGCTAGTAAAAGTATTGATA
GACTGATGAAGTTTCTTTCTAAGGAACTGACTGAAGGAACGAAAGCTACA
ACTGATATTGTTTCTGTTTATGATGGAACTATAGACCATGTGCATTCAGA
AGTGGAACAAAATATCAAAGCCATGTATGGACTGATTGCTAAGTGTGAAG
AACTTGATCGAAAGATGAAGCCTATAAATGAATTAGCCTCGCAAGTGAGG
AATATACGAGAAACGCTTGACCAATTAGAAAATATATGCAAATGATTCGG
TTTGATTTCATCGTCTTTGGCACTGTTCATGCTTAGTCATCGAGTTTATG
ATTCAAAAGTCTACGTCATCgaaattgtattgaaaaacTTGCCTCagact
ttttgagcttttttagAGAATGAATTCTAATTTCAACAGGGCGAGTCAAA
GATCGTTAAACCAATTGCTAAAGTAGAACTGATCAAATATTATATGCTAC
TCAGGAATCACCCTAACATTAAAAACTTAACATTGGTCAAGCTTCGGAGA
CCATCATGCCCTTGGAATGATTTTGAATTATGAAAGGCGctatttcaatc
atttttcaaatctcTAAGATAAAATGATTCTCAGACCTTCACCAATGGCA
ATAGGGACTGCTTTAATTATCATTTACAAGGGGGGGGGGCGGAGGTCATT
GGACATTTTTGATATGGAAAGTATGATATTGTTTAGGCACACAGCTAACT
GTTTGTTTATAAATGAATTTAGAATATAAATTAATAGAGGatttaaaata
attattttaaagattttaatttgGCGTTATTCAAGTCAAGAAAATTACTC
GATTGATACATTTTAAATTAGTGAATCTATATTTTCATACCAATCAGCTG
ATTGATTCGAGgcttgtaaaatcgctcgaaaAGTAAGAAGGGTGTCCATA
AAAAAAGGATATAggatttttataaagaaagatTCTCG
Run BLAST on NCBI

protein sequence of TCONS_00011659-protein

>TCONS_00011659-protein ID=TCONS_00011659-protein|Name=TCONS_00011659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
ANKTNTLISLFYFFIKVTVKGQLLIKYETKMFLMILNYNGCIIEHCLEDH
SSRMAKPRSSSPVSYISSSSEDDIQLNDKNTPTQAQQTLKSQITSVDPMV
LPEIEEQAKIASKSIDRLMKFLSKELTEGTKATTDIVSVYDGTIDHVHSE
VEQNIKAMYGLIAKCEELDRKMKPINELASQVRNIRETLDQLENICK
Run BLAST on NCBI

transcript from alignment at sc0000131:351208..353264+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011659 ID=TCONS_00011659|Name=TCONS_00011659|organism=Clytia hemisphaerica|type=transcript|length=2057bp|location=Sequence derived from alignment at sc0000131:351208..353264+ (Clytia hemisphaerica)
TGCGAATAAGACCAATACCTTGATtagccttttttattttttcatcaagg
tgacggtcaaaggccagcttttgatcaagtatgagaccaagatgtttttg
atgatcctGAACTACAATGGCTGCATTATTGAACGTAATTTCTGAGGGGT
CAGGTGGATTTAGCCTCCTGGTAAAGTACACTTCAACTGCCTGTTTAAAA
GGATCAGGGTTGAAGGACattttccattgatgagcccactCATCTTCTGC
ATGTCACATGTCAATGATTTCCAAAACTTCAGATaataacagaagaatga
agaaacactataaagattcgaaatcatatggtaaacattcgaaaacaata
gaatgtcttcatttctctCAAAATTAAAGAGAGGGGAAAATGCGCGAAAa
cttttaccccccccccttcataATTTATTTACCAAGCATAGGTAGGGTCA
AGCATAAGTCGAggctttacttaagcatagtgagcttcagccgaaattta
tcgtatgcttataaaaaaatgagtgtatgATGATAGCTTTGCATTGattg
agttttattttttattccgAAACTCCATTTAAGGTAAAAGCCAAAGGATG
TATTTTTTTCCAACGCCTACGTGACACCTCCGCTCACCTTTTCCGTTNTT
TAAGGTAAAAGCCAAAGGATGTATTTTTTTCCAACGCCTACGTGGCACCT
ACGCTCACCTTTTCCGTGTGATACTTTTCCTGTGTGATATTGCTTCAGCC
TGACTGGCCTGTTAGTCTAGACCaaaggataattttttatcaGGTATTAT
GATGAGAGCAAAATTATTTGTTTACTGTGTACTTAAACAGCTAAATTGTT
AAAAAGGAGGGAACTTTCTTTGATtaaaatctttcttctttccttcTTGG
TAGATTGTTTGGAGGATCATTCATCACGGATGGCCAAACCGAGATCAAGC
TCACCAGTGAGCTATATTTCCAGTTCATCTGAGGATGATATTCAGCTCAA
CGATAAAAACACACCCACACAAGCACAGCAAACATTAAAAAGTCAAATCA
CCTCAGTAGATCCAATGGTACTGCCTGAGATCGAAGAGCAAGCGAAAATT
GCTAGTAAAAGTATTGATAGACTGATGAAGTTTCTTTCTAAGGAACTGAC
TGAAGGAACGAAAGCTACAACTGATATTGTTTCTGTTTATGATGGAACTA
TAGACCATGTGCATTCAGAAGTGGAACAAAATATCAAAGCCATGTATGGA
CTGATTGCTAAGTGTGAAGAACTTGATCGAAAGATGAAGCCTATAAATGA
ATTAGCCTCGCAAGTGAGGAATATACGAGAAACGCTTGACCAATTAGAAA
ATATATGCAAATGATTCGGTTTGATTTCATCGTCTTTGGCACTGTTCATG
CTTAGTCATCGAGTTTATGATTCAAAAGTCTACGTCATCgaaattgtatt
gaaaaacTTGCCTCagactttttgagcttttttagAGAATGAATTCTAAT
TTCAACAGGGCGAGTCAAAGATCGTTAAACCAATTGCTAAAGTAGAACTG
ATCAAATATTATATGCTACTCAGGAATCACCCTAACATTAAAAACTTAAC
ATTGGTCAAGCTTCGGAGACCATCATGCCCTTGGAATGATTTTGAATTAT
GAAAGGCGctatttcaatcatttttcaaatctcTAAGATAAAATGATTCT
CAGACCTTCACCAATGGCAATAGGGACTGCTTTAATTATCATTTACAAGG
GGGGGGGGCGGAGGTCATTGGACATTTTTGATATGGAAAGTATGATATTG
TTTAGGCACACAGCTAACTGTTTGTTTATAAATGAATTTAGAATATAAAT
TAATAGAGGatttaaaataattattttaaagattttaatttgGCGTTATT
CAAGTCAAGAAAATTACTCGATTGATACATTTTAAATTAGTGAATCTATA
TTTTCATACCAATCAGCTGATTGATTCGAGgcttgtaaaatcgctcgaaa
AGTAAGAAGGGTGTCCATAAAAAAAGGATATAggatttttataaagaaag
atTCTCG

Coding sequence (CDS) from alignment at sc0000131:351208..353264+

>TCONS_00011659 ID=TCONS_00011659|Name=TCONS_00011659|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000131:351208..353264+ (Clytia hemisphaerica)
GCGAATAAGACCAATACCTTGATtagccttttttattttttcatcaaggt
gacggtcaaaggccagcttttgatcaagtatgagaccaagatgtttttga
tgatcctGAACTACAATGGCTGCATTATTGAACATTGTTTGGAGGATCAT
TCATCACGGATGGCCAAACCGAGATCAAGCTCACCAGTGAGCTATATTTC
CAGTTCATCTGAGGATGATATTCAGCTCAACGATAAAAACACACCCACAC
AAGCACAGCAAACATTAAAAAGTCAAATCACCTCAGTAGATCCAATGGTA
CTGCCTGAGATCGAAGAGCAAGCGAAAATTGCTAGTAAAAGTATTGATAG
ACTGATGAAGTTTCTTTCTAAGGAACTGACTGAAGGAACGAAAGCTACAA
CTGATATTGTTTCTGTTTATGATGGAACTATAGACCATGTGCATTCAGAA
GTGGAACAAAATATCAAAGCCATGTATGGACTGATTGCTAAGTGTGAAGA
ACTTGATCGAAAGATGAAGCCTATAAATGAATTAGCCTCGCAAGTGAGGA
ATATACGAGAAACGCTTGACCAATTAGAAAATATATGCAAATGAGCGAAT
AAGACCAATACCTTGATtagccttttttattttttcatcaaggtgacggt
caaaggccagcttttgatcaagtatgagaccaagatgtttttgatgatcc
tGAACTACAATGGCTGCATTATTGAACATTGTTTGGAGGATCATTCATCA
CGGATGGCCAAACCGAGATCAAGCTCACCAGTGAGCTATATTTCCAGTTC
ATCTGAGGATGATATTCAGCTCAACGATAAAAACACACCCACACAAGCAC
AGCAAACATTAAAAAGTCAAATCACCTCAGTAGATCCAATGGTACTGCCT
GAGATCGAAGAGCAAGCGAAAATTGCTAGTAAAAGTATTGATAGACTGAT
GAAGTTTCTTTCTAAGGAACTGACTGAAGGAACGAAAGCTACAACTGATA
TTGTTTCTGTTTATGATGGAACTATAGACCATGTGCATTCAGAAGTGGAA
CAAAATATCAAAGCCATGTATGGACTGATTGCTAAGTGTGAAGAACTTGA
TCGAAAGATGAAGCCTATAAATGAATTAGCCTCGCAAGTGAGGAATATAC
GAGAAACGCTTGACCAATTAGAAAATATATGCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006541XLOC_006541Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011659-proteinTCONS_00011659-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011659-exon-sc0000131-1491911889:351208..351341TCONS_00011659-exon-sc0000131-1491911889:351208..351341Clytia hemisphaericaexon
TCONS_00011659-exon-sc0000131-1510915933:351208..351341TCONS_00011659-exon-sc0000131-1510915933:351208..351341Clytia hemisphaericaexon
TCONS_00011659-exon-sc0000131-1575043694:351208..351341TCONS_00011659-exon-sc0000131-1575043694:351208..351341Clytia hemisphaericaexon
TCONS_00011659-exon-sc0000131-1491911889:352111..353264TCONS_00011659-exon-sc0000131-1491911889:352111..353264Clytia hemisphaericaexon
TCONS_00011659-exon-sc0000131-1510915933:352111..353264TCONS_00011659-exon-sc0000131-1510915933:352111..353264Clytia hemisphaericaexon
TCONS_00011659-exon-sc0000131-1575043694:352111..353264TCONS_00011659-exon-sc0000131-1575043694:352111..353264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:351208..353264 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.701791	0	0.520653	1.63349	5.27374	4.65985	7.8959	13.085	0.487839	2.3485	0.915517	0.405012	0	0	0	0.169052	0	0	0	0	1.0373	0	1.15245	0.457508	2.93412	1.72402	1.17862	1.01683	1.67723	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019314BORCS6
Blast
[Close]
BLAST of TCONS_00011659 vs. Swiss-Prot (Human)
Match: BORC6 (BLOC-1-related complex subunit 6 OS=Homo sapiens GN=BORCS6 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.452e-17
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 2 
Query:  287 VDPMVLPEIEEQAKIASKSIDRLMKFLSKELTEGTKATTDIVSVYDGTIDHVHSEVEQNIKAMYGLIAKCEELDRKMKPINELASQVRNIRETLDQLENICK 592
            +DP VL ++E  ++     +DRL++ L   + E T  +   +  Y   +D +   V+ +IK MY L+A+CEEL+R ++P+  LA QVR+IR TL+ LE +CK
Sbjct:  256 IDPEVLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLEVLEALCK 357
The following BLAST results are available for this feature:
BLAST of TCONS_00011659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BORC61.452e-1738.24BLOC-1-related complex subunit 6 OS=Homo sapiens G... [more]
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