TCONS_00011653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011653
Unique NameTCONS_00011653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011653 ID=TCONS_00011653|Name=TCONS_00011653|organism=Clytia hemisphaerica|type=transcript|length=1666bp
GCTGACAGCTAGACtgttaaattctaaaaagtaaTCAATCATTTTCtgta
tgaatttttttcactctTAGTATCaagtttaaaataaattaaCCTACATA
AAAACAAATTAGACAGTTAAAAAAAGAAGTATATAAAGGTTATTATGGCA
GAAGAAAACTACATCAAGATTACAGAATCGATGTATTCATTGCAGCATTT
CACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTGTGATTCTTCCCC
ATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAGGGACATCCATGAA
TGTTTTCATGATGAATCATTGAAAATCTTATGTATTTTGAAGGGAGGATA
TCAGTTTTGTAATGACCTTACGCACTACATAAAAGCACTAAACAGAGGAT
CAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCGAGTGAAAAGCTAT
AAAAATGATCAATCTTCTGGGGAAGTCAATATCATCGGTGGTGATGACTT
ATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAGGATATTGTAGACA
CTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGAAAAATATCAACCA
AAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATCACAACAGAGGCAC
TGGATATAAACCTGACTATATTGGCTTCCAAGTTCCTGATAAATTCATCG
TCGGTTATGCATTGGATTACAACGAATTCTACCGTGATTTGAACCATATT
TGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCATATCATAAATAAT
TGTTTTCCACTGGAAAAGATTGTCACTATATGCAACGGTGTTAGACgaat
caaaaaacttttaagaaaaatttataattataatgaaataaaattctTAT
ATATGATGTAATTATTGTGtgtgataaatatttttagaaatattttcgtt
tttttaatgTCTCTCATTTTTATAAGTTTTGTACTTTTAGTTAGTTTGCA
AGTTTGTACTGCCTGTTTGCTTTGTAAACCTTTTCTTAAAGAGCGTTGCA
GTGTGCACATGAAGATACTGCACCTTGTTCTGAACAGACTTAGCTCCAAA
AACTGTATATAACTGTACAATGGAATCTGCACAGATCTGCAGGCTAAATT
TTTGTGCTCCTTTTTTAAGTTAGGTAGTAATCTTAAAACTCAAATCTTTG
TACGATcccttttaaaacattttatttttgagtTAGTTTTATCATCTTCA
ACATTAACGCTAGtttattttggaatatttgatTTATCCAACCATAGAAT
AATCTTTTTAACAACTTCTTTTGTCATTCACATTCACTTTGTAAATACAT
TAGAACCTACATCCCTCATTTGGTATAGataaaccttaaaaccaacactA
TTAGTTCTTGgacaaaatcattgaaaatttcTTCGGTGATTTTCTTGTAG
TTCTTCTCTTTCCATGTTGGTTTTTTAGTAAAAACACCATAACTCTTGTA
CTATGGTTATTGCATAAACTAATAATGCACATTTATCATTTAtagttatt
ttttgaatttatttgtaataaaaattaaatttcattgTTTGCTTAGTATA
GAATGATTAATGTTATGAAAATTATTAGTCCATATCACaagtttgaagaa
aatgttATGTTTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00011653-protein

>TCONS_00011653-protein ID=TCONS_00011653-protein|Name=TCONS_00011653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MAEENYIKITESMYSLQHFTIPKHYEEAVESVILPHGLIMNRIERMARDI
HECFHDESLKILCILKGGYQFCNDLTHYIKALNRGSGKSIQLGIDFLRVK
SYKNDQSSGEVNIIGGDDLSHLKDKNVLIVEDIVDTGRTMERLLKTLEKY
QPKSVKVAALLIKDHNRGTGYKPDYIGFQVPDKFIVGYALDYNEFYRDLN
HICVISESGKKKYSIS
Run BLAST on NCBI

transcript from alignment at sc0000131:256362..261785+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011653 ID=TCONS_00011653|Name=TCONS_00011653|organism=Clytia hemisphaerica|type=transcript|length=5424bp|location=Sequence derived from alignment at sc0000131:256362..261785+ (Clytia hemisphaerica)
GCTGACAGCTAGACtgttaaattctaaaaagtaaTCAATCATTTTCtgta
tgaatttttttcactctTAGTATCaagtttaaaataaattaaCCTACATA
AAAACAAATTAGACAGTTAAAAAAAGAAGTATATAAAGGTTATTATGGCA
GAAGAAAACTACATCAAGGTAAAACCCCAAGTTTTGTtgctttaaaagtt
tttttctatatttttttatttttattactcTTCATTTAGTTAtttaggct
ggacttaaaaaattgttggtttgccgtcatccgactgaccctacctcgaa
acctgctgacccaaaaaaatttattgccattttaaagaagattttttttc
cttcaaaaacttcaaacaataaaaaaacaaaactcgTATCTTCAATCACC
CTCGAAATATATaatgagattttagtgtattttaacgtttttcaaaattt
aaagttccTGCGAGAATtgctttcttccattgaatatttcgattttagag
gggtttggtggcttctaggctttattccaagcctcattcgagcaaatttg
agcttttaaatccttaGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcttaa
gtctcatgttaaaactcagagttaaaactctactttccaactgtagttta
aggcgcttaaaaatcaattgtggtgttcaaaattaaaccgggaactcccc
tttgtctcaaatatttagtggatgatTGTTGTTATGCCTCAaacataaga
atcgtaaattccctgctagcacttctgttttttattcaaaattacctaaa
ttacccttccatggacaaaaatttcataaatcgccaaaatgaaaataaat
tcagaccgaccgacccacctccaaaatctagggtcgggtgacgaccaata
attttttaagcccagccttATTGTGAGCTTTGGTTTCATCATAAATGAAA
TAACTGTAActgttttataaaaaatattgctgatgtcattaaaattgatt
tctgagaaaattactcaaatttgATTGGATGTAACAACACAACTGGCAGA
TAGTTTTAAATCAAGTATTTAAAATAGATGGTCTTAGAAATTACTTTTGA
ATTTACATCACGCCTGACACTCAGGCAAAATAAAGTTGGTAGTGGGATAA
TCATGTTTTTCAAATAATCATTTCAGATTACAGAATCGATGTATTCATTG
CAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTGTGAT
TCTTCCCCATGGGTTAATCATGAACAGGTACCAGGAATCCTCATTGATTT
CTAATAAGTGACGCTCCTTGAttgtaaaattgttttaaaGCTGTAAAACA
TCTAGCTTTGACATTTCAAAAGGTTTAGCATCTTCCacttcaacaaattt
ttttatgaaaaggaAAAAGGTAGTTCCAAGGGTTAATACCTATCCTGCTA
TGCCAATACATTGCTGTTTGTAAATTTTCTTGCAAGGTTGAGAATTTTCC
TAGAGCAAAAACTTCTTTTCATCTTGCAGGATTGAAAGAATGGCAAGGGA
CATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTTTGA
AGGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCACTA
AACAGAGGATCAGGTTTGTTGCGCTACCAACCAGAAATTTATTGTTTATA
ATCTATTTTAAAGGTAGAAGATAGTGCAGGGCCATTCTAAACTGAACCAT
AGTCAGATTTCTTGATCAATGACAAAGTGCTCTGTTTGCTCATAACTTAC
CGCCCCTTTCCCTTCTTCAATTTATGTAGATTTATAACCGCACTgtgtaa
taattttttcttcttgaatTTATTATTAGGAAAATCAATCCAACTGGGAA
TAGACTTTCTTCGAGTGAAAAGCTATAAAGTATGTTTTTGTCTTCAAAAA
TTCAGTATTCAATATTTAAGAAATTTCAATAGTCTTCAACATTTCCTTTA
TAACTTCCAAAATTATTTTCGCCTCAATTATTTCAGAAAAGTTCATCCCA
TTAAGGTCAAGTTAAAAATCTGGcgagaaaacaaatttttcagttatttg
aACTCTCAGTTATATTCAAAATCtcagttattcaaaataaattgtTATCC
CCCTTGGAGTTTGCAATAACCGGGCGTATGCTGTAGAAAGAATCCATGAA
ACACTTCTATTGGACCCAACCATAAATATTTCATAACTCTTTATAGAATG
ATCAATCTTCTGGGGAAGTCAATATCATCGGTGGTGATGACTTATCTCAT
CTTAAAGATAAGGTATGATGCGCCAGTCTGATACGAAagaattaaattga
aatatcaCTTTTTTTAAACAGATTTGTAGTAATTGTGAAAATAGTGTTTA
AGTTTTGGACAATTTATTAAAGTATGACAATTTAAAACGAAATTAGGACA
GTGATATTGAACTCTTCTTATTTATCATATTTTATACTATTTCATTtaac
tctttgttttttttttcagaatgttCTCATTGTGGAGGTAAGACTTTATC
TACAAGAATGAGCATTTGGGTTTCTTTAAcatttgccccccccccccccc
cattttttttcacgattttttctgCAATTCTTTTATtcatgcaatttttg
ttcacgtaaactttttcaattcacgcattcgcgcaatctttttgaaattt
tcacgcattcatacAACTGAAaacccattcacgcattcacacaaacCACT
TGGCGTCCCCATTCATGACATCCCAAAATAAAGtactaatttttttaagt
gcGGTTTAATGCTATTAGTAGGTGGGTGTCTCATTCACACCTAGATTGAT
TCAAGGCCTTGTTATTGccaatttttatcaatttacaaTTTACAATAATA
CATATCCAATCTTTTAGGATATTGTAGACACTGGAAGGACAATGGAAAGA
TTGCTGAAAACGTTGGAAAAATATCAACCAAAATCTGTTAAAGTTGCTGC
GTAAGTTTTCAATATGTAAATGAGGGCATAGTAGTGTGAATCAAAAATTA
CCTATTTCATGGTCTGCTATGGACTTTAAGCCTTGTTGTACTATGATATT
GTGTCTCTAGCTTGATTCTTTATTATTCACCTATTCATCTATTCAAAGCG
ATATTAAGATAGGCATAATGTcaaagttaaatcttcaaaacatTGAGCTA
CAATAAagctttgtttttttcttcttcctagTCTACTCATCAAAGATCAC
AACAGAGGCACTGGATATAAACCTGACTGtaagtttttcatcaaaatgct
caatatTATAAAATTATCTTGGTTGACCACGGGTTCAGTGTTTTCAACtt
agattaaaaatttaaaaagatattgCTGAAATTTAGTTCGTGAAATTTTA
ACTAGCTAAACATGGTTTGTTAAGAACTTCTTATACCTAATTATTCACCT
TTTccatttgatttcatttttctgtaGATATTGGCTTCCAAGTTCCTGAT
AAATTCATCGTCGGTTATGCATTGGTAAGGTCTTGTATTTTGGGACCTAC
CTGGGGAGGTAATAATTTTAATGATTTGTTTCTCACGAGATATGATATAA
CCTTTCTTTTATTCTTCCCCTTTTAGGATTACAACGAATTCTACCGTGAT
TTGAACGTAAGTACTATCTCTTCTCATGGGCCCCATTTtgagcggggggg
gggggaaatattttggaaaaaatgtcggCCATCATGGTCAGGCAACGAAG
AAAAATTTTacctttttacaccctcaaaacatcTTTAAACGTtatctaat
tggggagaataaaagttttaatggcttaaaatagtaacttaAGAAAAAGT
ATGGCATGGTCTGCAAAAaagtgtgggggggggggggggggaaatatttt
ggaaaaaatgtcggCCATCATGGTCAGGCAACGAAGAAAAATTTTacctt
tttacaccctcaaaacatcTTTAAACGTtatctaattggggagaataaaa
gttttaatggcttaaaatagtaacttaAGAAAAAGTATGGCATGGTCTGC
AAAAaagtgtgggggggggggggggggaaatattttggaaaaaatgtcgg
CCATCATGGTCAGGCAACGAAGAAAAATTTTacctttttacaccctcaaa
acatcTTTAAACGTtatctaattggggagaataaaagttttaatggctta
aaatagtaacttaAGAAAAAGTATGGCATGGTCTGCAAAAAAGTGTGGGG
GGGGGGTGAGGGCCACGGTTCCCatacttctttaaaaaaagttcttcTCT
AAGTTGGAAAAgtaatgaatatttttataaaagtttccAATTGAATGTCG
acatgaaaacctttaagaagAAACTGTATAAAGCTTAAAATATATTTCTG
AAATATTGCTATCCGCACGGTACTAATTAAAATACTGTTTATTCCTTTCT
AGCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCATATCA
TAAATAATTGTTTTCCACTGGAAAAGATTGTCACTATATGCAACGGTGTT
AGACgaatcaaaaaacttttaagaaaaatttataattataatgaaataaa
attctTATATATGATGTAATTATTGTGtgtgataaatatttttagaaata
ttttcgtttttttaatgTCTCTCATTTTTATAAGTTTTGTACTTTTAGTT
AGTTTGCAAGTTTGTACTGCCTGTTTGCTTTGTAAACCTTTTCTTAAAGA
GCGTTGCAGTGTGCACATGAAGATACTGCACCTTGTTCTGAACAGACTTA
GCTCCAAAAACTGTATATAACTGTACAATGGAATCTGCACAGATCTGCAG
GCTAAATTTTTGTGCTCCTTTTTTAAGTTAGGTAGTAATCTTAAAACTCA
AATCTTTGTACGATcccttttaaaacattttatttttgagtTAGTTTTAT
CATCTTCAACATTAACGCTAGtttattttggaatatttgatTTATCCAAC
CATAGAATAATCTTTTTAACAACTTCTTTTGTCATTCACATTCACTTTGT
AAATACATTAGAACCTACATCCCTCATTTGGTATAGataaaccttaaaac
caacactATTAGTTCTTGgacaaaatcattgaaaatttcTTCGGTGATTT
TCTTGTAGTTCTTCTCTTTCCATGTTGGTTTTTTAGTAAAAACACCATAA
CTCTTGTACTATGGTTATTGCATAAACTAATAATGCACATTTATCATTTA
tagttattttttgaatttatttgtaataaaaattaaatttcattgTTTGC
TTAGTATAGAATGATTAATGTTATGAAAATTATTAGTCCATATCACaagt
ttgaagaaaatgttATGTTTTGAT

Coding sequence (CDS) from alignment at sc0000131:256362..261785+

>TCONS_00011653 ID=TCONS_00011653|Name=TCONS_00011653|organism=Clytia hemisphaerica|type=CDS|length=7161bp|location=Sequence derived from alignment at sc0000131:256362..261785+ (Clytia hemisphaerica)
ATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTATTCATTGCA
GCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTGTGATTC
TTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAGGGACATC
CATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTTTGAAGGG
AGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCACTAAACA
GAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCGAGTGAAA
AGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATCGGTGGTGA
TGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAGGATATTG
TAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGAAAAATAT
CAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATCACAACAG
AGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCCTGATAAAT
TCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTGATTTGAAC
CATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCATATCATA
AATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTATTCATTGC
AGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTGTGATT
CTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAGGGACAT
CCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTTTGAAGG
GAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCACTAAAC
AGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCGAGTGAA
AAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATCGGTGGTG
ATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAGGATATT
GTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGAAAAATA
TCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATCACAACA
GAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCCTGATAAA
TTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTGATTTGAA
CCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCATATCAT
AAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTATTCATTG
CAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTGTGAT
TCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAGGGACA
TCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTTTGAAG
GGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCACTAAA
CAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCGAGTGA
AAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATCGGTGGT
GATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAGGATAT
TGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGAAAAAT
ATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATCACAAC
AGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCCTGATAA
ATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTGATTTGA
ACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCATATCA
TAAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTATTCATT
GCAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTGTGA
TTCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAGGGAC
ATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTTTGAA
GGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCACTAA
ACAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCGAGTG
AAAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATCGGTGG
TGATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAGGATA
TTGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGAAAAA
TATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATCACAA
CAGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCCTGATA
AATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTGATTTG
AACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCATATC
ATAAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTATTCAT
TGCAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTGTG
ATTCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAGGGA
CATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTTTGA
AGGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCACTA
AACAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCGAGT
GAAAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATCGGTG
GTGATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAGGAT
ATTGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGAAAA
ATATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATCACA
ACAGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCCTGAT
AAATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTGATTT
GAACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCATAT
CATAAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTATTCA
TTGCAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTGT
GATTCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAGGG
ACATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTTTG
AAGGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCACT
AAACAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCGAG
TGAAAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATCGGT
GGTGATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAGGA
TATTGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGAAA
AATATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATCAC
AACAGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCCTGA
TAAATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTGATT
TGAACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCATA
TCATAAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTATTC
ATTGCAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCTG
TGATTCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAGG
GACATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTTT
GAAGGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCAC
TAAACAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCGA
GTGAAAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATCGG
TGGTGATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAGG
ATATTGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGAA
AAATATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATCA
CAACAGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCCTG
ATAAATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTGAT
TTGAACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCAT
ATCATAAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTATT
CATTGCAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATCT
GTGATTCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAAG
GGACATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATTT
TGAAGGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGCA
CTAAACAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTCG
AGTGAAAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATCG
GTGGTGATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGAG
GATATTGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGGA
AAAATATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGATC
ACAACAGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCCT
GATAAATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTGA
TTTGAACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCCA
TATCATAAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTAT
TCATTGCAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAATC
TGTGATTCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCAA
GGGACATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTATT
TTGAAGGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAGC
ACTAAACAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTTC
GAGTGAAAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCATC
GGTGGTGATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGGA
GGATATTGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTGG
AAAAATATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGAT
CACAACAGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTCC
TGATAAATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGTG
ATTTGAACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTCC
ATATCATAAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGTA
TTCATTGCAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAAT
CTGTGATTCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGCA
AGGGACATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTAT
TTTGAAGGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAAG
CACTAAACAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCTT
CGAGTGAAAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCAT
CGGTGGTGATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTGG
AGGATATTGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTTG
GAAAAATATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAGA
TCACAACAGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTTC
CTGATAAATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCGT
GATTTGAACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATTC
CATATCATAAATGGCAGAAGAAAACTACATCAAGATTACAGAATCGATGT
ATTCATTGCAGCATTTCACTATTCCCAAACATTATGAGGAAGCTGTCGAA
TCTGTGATTCTTCCCCATGGGTTAATCATGAACAGGATTGAAAGAATGGC
AAGGGACATCCATGAATGTTTTCATGATGAATCATTGAAAATCTTATGTA
TTTTGAAGGGAGGATATCAGTTTTGTAATGACCTTACGCACTACATAAAA
GCACTAAACAGAGGATCAGGAAAATCAATCCAACTGGGAATAGACTTTCT
TCGAGTGAAAAGCTATAAAAATGATCAATCTTCTGGGGAAGTCAATATCA
TCGGTGGTGATGACTTATCTCATCTTAAAGATAAGaatgttCTCATTGTG
GAGGATATTGTAGACACTGGAAGGACAATGGAAAGATTGCTGAAAACGTT
GGAAAAATATCAACCAAAATCTGTTAAAGTTGCTGCTCTACTCATCAAAG
ATCACAACAGAGGCACTGGATATAAACCTGACTATATTGGCTTCCAAGTT
CCTGATAAATTCATCGTCGGTTATGCATTGGATTACAACGAATTCTACCG
TGATTTGAACCATATTTGCGTGATATCAGAGAGTGGAAAGAAGAAATATT
CCATATCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006538XLOC_006538Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011653-proteinTCONS_00011653-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011653-exon-sc0000131-1491911889:256362..256529TCONS_00011653-exon-sc0000131-1491911889:256362..256529Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:256362..256529TCONS_00011653-exon-sc0000131-1510915933:256362..256529Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:256362..256529TCONS_00011653-exon-sc0000131-1575043694:256362..256529Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:257588..257688TCONS_00011653-exon-sc0000131-1491911889:257588..257688Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:257588..257688TCONS_00011653-exon-sc0000131-1510915933:257588..257688Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:257588..257688TCONS_00011653-exon-sc0000131-1575043694:257588..257688Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:257941..258074TCONS_00011653-exon-sc0000131-1491911889:257941..258074Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:257941..258074TCONS_00011653-exon-sc0000131-1510915933:257941..258074Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:257941..258074TCONS_00011653-exon-sc0000131-1575043694:257941..258074Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:258291..258340TCONS_00011653-exon-sc0000131-1491911889:258291..258340Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:258291..258340TCONS_00011653-exon-sc0000131-1510915933:258291..258340Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:258291..258340TCONS_00011653-exon-sc0000131-1575043694:258291..258340Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:258658..258723TCONS_00011653-exon-sc0000131-1491911889:258658..258723Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:258658..258723TCONS_00011653-exon-sc0000131-1510915933:258658..258723Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:258658..258723TCONS_00011653-exon-sc0000131-1575043694:258658..258723Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:258931..258948TCONS_00011653-exon-sc0000131-1491911889:258931..258948Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:258931..258948TCONS_00011653-exon-sc0000131-1510915933:258931..258948Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:258931..258948TCONS_00011653-exon-sc0000131-1575043694:258931..258948Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:259329..259411TCONS_00011653-exon-sc0000131-1491911889:259329..259411Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:259329..259411TCONS_00011653-exon-sc0000131-1510915933:259329..259411Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:259329..259411TCONS_00011653-exon-sc0000131-1575043694:259329..259411Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:259643..259689TCONS_00011653-exon-sc0000131-1491911889:259643..259689Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:259643..259689TCONS_00011653-exon-sc0000131-1510915933:259643..259689Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:259643..259689TCONS_00011653-exon-sc0000131-1575043694:259643..259689Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:259889..259935TCONS_00011653-exon-sc0000131-1491911889:259889..259935Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:259889..259935TCONS_00011653-exon-sc0000131-1510915933:259889..259935Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:259889..259935TCONS_00011653-exon-sc0000131-1575043694:259889..259935Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:260038..260067TCONS_00011653-exon-sc0000131-1491911889:260038..260067Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:260038..260067TCONS_00011653-exon-sc0000131-1510915933:260038..260067Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:260038..260067TCONS_00011653-exon-sc0000131-1575043694:260038..260067Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1491911889:260864..261785TCONS_00011653-exon-sc0000131-1491911889:260864..261785Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1510915933:260864..261785TCONS_00011653-exon-sc0000131-1510915933:260864..261785Clytia hemisphaericaexon
TCONS_00011653-exon-sc0000131-1575043694:260864..261785TCONS_00011653-exon-sc0000131-1575043694:260864..261785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:256362..261785 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.0279	36.1398	169.143	193.532	148.457	107.167	88	87.8944	72.6994	65.8028	44.2574	40.2016	22.5425	18.4661	33.5296	35.7153	46.265	43.6168	15.7636	26.0569	20.2939	19.2921	26.7744	28.1238	10.0913	14.326	26.043	20.489	18.2158	16.4663
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000836PRibTrfase_dom
IPR005904Hxn_phspho_trans
IPR029057PRTase-like
Vocabulary: Biological Process
TermDefinition
GO:0009116nucleoside metabolic process
GO:0006166purine ribonucleoside salvage
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0004422hypoxanthine phosphoribosyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009116 nucleoside metabolic process
biological_process GO:0006166 purine ribonucleoside salvage
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004422 hypoxanthine phosphoribosyltransferase activity
Blast
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BLAST of TCONS_00011653 vs. Swiss-Prot (Human)
Match: HPRT (Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 9.702e-80
Identity = 116/194 (59.79%), Postives = 149/194 (76.80%), Query Frame = 1 
Query:  175 ESMYSLQHFTIPKHYEEAVESVILPHGLIMNRIERMARDIHECFHDESLKILCILKGGYQFCNDLTHYIKALNRGSGKSIQLGIDFLRVKSYKNDQSSGEVNIIGGDDLSHLKDKNVLIVEDIVDTGRTMERLLKTLEKYQPKSVKVAALLIKDHNRGTGYKPDYIGFQVPDKFIVGYALDYNEFYRDLNHICV 756
            E  Y L  F IP HY E +E V +PHGLIM+R ER+ARD+ +      +  LC+LKGGY+F  DL  YIKALNR S +SI + +DF+R+KSY NDQS+G++ +IGGDDLS L  KNVLIVEDI+DTG+TM+ LL  + +Y PK VKVA+LL+K   R  GYKPD++GF++PDKF+VGYALDYNE++RDLNH+CV
Sbjct:   14 EPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCV 207
The following BLAST results are available for this feature:
BLAST of TCONS_00011653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HPRT9.702e-8059.79Hypoxanthine-guanine phosphoribosyltransferase OS=... [more]
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