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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011647 ID=TCONS_00011647|Name=TCONS_00011647|organism=Clytia hemisphaerica|type=transcript|length=2463bpRun BLAST on NCBI transcript from alignment at sc0000131:171713..188987+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011647 ID=TCONS_00011647|Name=TCONS_00011647|organism=Clytia hemisphaerica|type=transcript|length=17275bp|location=Sequence derived from alignment at sc0000131:171713..188987+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011647 vs. Swiss-Prot (Human)
Match: ANKZ1 (Ankyrin repeat and zinc finger domain-containing protein 1 OS=Homo sapiens GN=ANKZF1 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.057e-28 Identity = 109/378 (28.84%), Postives = 176/378 (46.56%), Query Frame = 2
Query: 332 GEEVASQHSNNIQLSGSKNSEG----EVPLKVS----CTTCDVWFDSPFLQREHFKLDWHRYNIKQKCLGKPLLTEDEFEEQVS-GELXXXXXXXXXXXXXXXXXPTSAITRQMSDVEIKEETSIFSMHPTKKFYITQDLMLVSFHRGVL----NQPEEAYQKSFSVIKQCKSSCIWTYLLISGGHFAAAVFDK---------------------------------SAGGQIRRYNEAALAEDIKNLLIG--WTKELQTSDKIFYKCSSYHMNVLFNDK-TPVKRDDERVSKISMQTNRPTFKEVQRIHQLFSTFDHYGLCSITEKNLEDLIENSTPQKQTQKGLPVKTNQNKNTDKETASPKQDHLKKRKENQKKP 1318
GE +A + SG + S + P+ +S C+TCD F + QREH+KLDWHR+N+KQ+ KPLL+ +FE+Q S G+LSSISGS+ D E+ T + R+ + E F +P + + + +R VL + PEEA ++ + C+ L+ + GHFA A+F SAG +RRYNEA L +D+++LL G W K L+ + I + ++ F K P++R D R+ I + T RPTF+E+QR+ +T Y E++ + + +PQ + V+ + K T++E +D + +N++ P
Sbjct: 37 GEALARAPRTSCSGSGERESPERKLLQGPMDISEKLFCSTCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALDFEKQSSTGDLSSISGSEDSDSASEEDLQT--LDRERATFEKLSRPPGF--YPHRVLFQNAQGQFLYAYRCVLGPHQDPPEEAELLLQNLQSRGPRDCV--VLMAAAGHFAGAIFQGREVVTHKTFHRYTVRAKRGTAQGLRDARGGPSHSAGANLRRYNEATLYKDVRDLLAGPSWAKALEEAGTILLRAPRSGRSLFFGGKGAPLQRGDPRLWDIPLATRRPTFQELQRVLHKLTTLHVY------EEDPREAVRLHSPQTHWKT---VREERKKPTEEEIRKICRDEKEALGQNEESP 399 The following BLAST results are available for this feature:
BLAST of TCONS_00011647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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