TCONS_00011625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011625
Unique NameTCONS_00011625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011625 ID=TCONS_00011625|Name=TCONS_00011625|organism=Clytia hemisphaerica|type=transcript|length=544bp
CTAGTATTGACTAGCCCGTCATCGCAATTCTTACAGAAAATAGGCGTTTC
TCTCGACATGACATTGACGAGGTTAAGCAGGTTGTCGCAAACCCGCAAAG
AACGTTTCGTTGAGTTCTCTAGGAATTCGGTTCTGTCATGGATTTTAAAC
TCACGCAGTAAAGCTATTATTAAGTCGAATCACAAAAATCGAACCACAAG
ATTTCTGAACTCACGCAGTATTGTTGGCAGAGAAAATCGTTCGTTGAAGG
GTTCATGtcaaagatttataaagcccgaagggctggaTGTAGGGTTTTGC
TGAAATATGTGCctgttaggtaggaaatcctacctaagtcaagTGACAAT
ACAATAGCATTTCAGCGCTTGATCAATCAGAAgattcgcgggttttcgaa
aacaatagcaacaatattttttccgatattcactttttacctgcgatggc
ttaaagcacgacatttagccctttgggctttttAAATCTATGGTCCATGT
ATTGTAAAATAATTGGAATTTGCCGGCAGCCGAGGGAAGAGGAA
Run BLAST on NCBI

transcript from alignment at sc0000130:429582..430125

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011625 ID=TCONS_00011625|Name=TCONS_00011625|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at sc0000130:429582..430125 (Clytia hemisphaerica)
TTCCTCTTCCCTCGGCTGCCGGCAAATTCCAATTATTTTACAATACATGG
ACCATAGATTTaaaaagcccaaagggctaaatgtcgtgctttaagccatc
gcaggtaaaaagtgaatatcggaaaaaatattgttgctattgttttcgaa
aacccgcgaatcTTCTGATTGATCAAGCGCTGAAATGCTATTGTATTGTC
ActtgacttaggtaggatttcctacctaacagGCACATATTTCAGCAAAA
CCCTACAtccagcccttcgggctttataaatctttgaCATGAACCCTTCA
ACGAACGATTTTCTCTGCCAACAATACTGCGTGAGTTCAGAAATCTTGTG
GTTCGATTTTTGTGATTCGACTTAATAATAGCTTTACTGCGTGAGTTTAA
AATCCATGACAGAACCGAATTCCTAGAGAACTCAACGAAACGTTCTTTGC
GGGTTTGCGACAACCTGCTTAACCTCGTCAATGTCATGTCGAGAGAAACG
CCTATTTTCTGTAAGAATTGCGATGACGGGCTAGTCAATACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006521XLOC_006521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011625-exon-sc0000130-1491911889:429582..430125TCONS_00011625-exon-sc0000130-1491911889:429582..430125Clytia hemisphaericaexon
TCONS_00011625-exon-sc0000130-1510915933:429582..430125TCONS_00011625-exon-sc0000130-1510915933:429582..430125Clytia hemisphaericaexon
TCONS_00011625-exon-sc0000130-1575043694:429582..430125TCONS_00011625-exon-sc0000130-1575043694:429582..430125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:429582..430125 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.78126	1.12081	0	0	0	0	0.179251	0	0	0	0.142706	0	0	0	0.095586	0	0	0	0	0	0	0	0	0	0	0	0	0.11976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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