TCONS_00011608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011608
Unique NameTCONS_00011608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011608 ID=TCONS_00011608|Name=TCONS_00011608|organism=Clytia hemisphaerica|type=transcript|length=597bp
ACCACAATTCCAACAATTTAGGTTATACTGTCCTGAAGCTCGATATGCTG
CCGTCGAGTGACCGAACCTGCCACATTTCTTGCAAGTTTGGCTATACCGA
GGCCCAAACCTGAAGTCCATCCGATCTTTTATTACCCTGGCTCAGACAGT
CTATTTCTCGCATTAAGGCGGCAACGTCGGCTTGTCTATCGTCCACTGGC
CTTCGTCTACTATCGCCCACCAAGCCCGTCCGCCTTCCATTTCGTCAGCC
GACAGTTTTGAATCTGATTCGGTCTTTTCCCTTTCGCTGAATAATAATTC
AGAATAGTCGCACAATGAGCTTCTCCCTCGCCGAAGGTTCTGCTTCGCGG
GAGGCGGAGGAGTAACACTCGCACAATAAACATAGTTGTCGTACATTCCT
CAAAATCCTAATAAAACACCATACTCTGATGTCGGAAAAAGGAATGTAGG
TTCGTTAGTGCTTAATGGTGATTAATCAATGACAGCCACAGTTAAGCACA
GATATCAATCTATTTACCGCGTAGCCCGGCGGAAACCCGGCGGTATTTCT
CATTCGTCAGAACTTGTCTAAAATTGATAGCAATTTTCATTAGAATA
Run BLAST on NCBI

transcript from alignment at sc0000130:95248..95844

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011608 ID=TCONS_00011608|Name=TCONS_00011608|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at sc0000130:95248..95844 (Clytia hemisphaerica)
TATTCTAATGAAAATTGCTATCAATTTTAGACAAGTTCTGACGAATGAGA
AATACCGCCGGGTTTCCGCCGGGCTACGCGGTAAATAGATTGATATCTGT
GCTTAACTGTGGCTGTCATTGATTAATCACCATTAAGCACTAACGAACCT
ACATTCCTTTTTCCGACATCAGAGTATGGTGTTTTATTAGGATTTTGAGG
AATGTACGACAACTATGTTTATTGTGCGAGTGTTACTCCTCCGCCTCCCG
CGAAGCAGAACCTTCGGCGAGGGAGAAGCTCATTGTGCGACTATTCTGAA
TTATTATTCAGCGAAAGGGAAAAGACCGAATCAGATTCAAAACTGTCGGC
TGACGAAATGGAAGGCGGACGGGCTTGGTGGGCGATAGTAGACGAAGGCC
AGTGGACGATAGACAAGCCGACGTTGCCGCCTTAATGCGAGAAATAGACT
GTCTGAGCCAGGGTAATAAAAGATCGGATGGACTTCAGGTTTGGGCCTCG
GTATAGCCAAACTTGCAAGAAATGTGGCAGGTTCGGTCACTCGACGGCAG
CATATCGAGCTTCAGGACAGTATAACCTAAATTGTTGGAATTGTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006504XLOC_006504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011608-exon-sc0000130-1491911889:95248..95844TCONS_00011608-exon-sc0000130-1491911889:95248..95844Clytia hemisphaericaexon
TCONS_00011608-exon-sc0000130-1510915933:95248..95844TCONS_00011608-exon-sc0000130-1510915933:95248..95844Clytia hemisphaericaexon
TCONS_00011608-exon-sc0000130-1575043694:95248..95844TCONS_00011608-exon-sc0000130-1575043694:95248..95844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:95248..95844 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0914375	0.267498	0.20706	0.303864	0.246617	0.0974401	0.705344	0.330167	0.30821	0.286326	0.741107	0.304484	0.54731	0.252616	0.0519212	0.167158	0.0686418	0	0	0.101713	0.265221	0.129365	0.10484	0	0	0.525699	0.250758	0.267616	0	0.206801
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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