|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011588 ID=TCONS_00011588|Name=TCONS_00011588|organism=Clytia hemisphaerica|type=transcript|length=3454bpRun BLAST on NCBI protein sequence of TCONS_00011588-protein >TCONS_00011588-protein ID=TCONS_00011588-protein|Name=TCONS_00011588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp MGDSEETLFNNIIGDMKNMGPLWEDLYVKASKFYGAIKQTAITADAFLESRun BLAST on NCBI transcript from alignment at sc0000130:461494..479640- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011588 ID=TCONS_00011588|Name=TCONS_00011588|organism=Clytia hemisphaerica|type=transcript|length=18147bp|location=Sequence derived from alignment at sc0000130:461494..479640- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000130:461494..479640- >TCONS_00011588 ID=TCONS_00011588|Name=TCONS_00011588|organism=Clytia hemisphaerica|type=CDS|length=11340bp|location=Sequence derived from alignment at sc0000130:461494..479640- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011588 vs. Swiss-Prot (Human)
Match: MTSSL (MTSS1-like protein OS=Homo sapiens GN=MTSS1L PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 3.910e-43 Identity = 93/241 (38.59%), Postives = 155/241 (64.32%), Query Frame = 1
Query: 211 LFNNIIGDMKNMGPLWEDLYVKASKFYGAIKQTAITADAFLESFQKVADATNNSKGSTRDIGISFGKIVFRHKQIEYKLKAYVGVLADNFLTPLQEAVDEWKKTNSLLEKDHAXXXXXXXXXXXXANADVAXXXXXXXXXXXXQ-EYTDQFREAMRVANSICKTLEDQERSYLEKVMVEERKRAAQFFQFYKPVMDQELTLISEIEQLQSIVDETTLKCQQPTELPETAKDIIKDYKVPEY 930
LF I+ DMK+ P+WED KA+K + ++ T + A AFL++FQKVAD N++G+TRDIG + ++ RH+ IE KL+ + L ++ + PLQE +++WKK + L+KDHAK+YK+ + ++KK ++D KL+KKA K++ + + Q A++ N + LE+ E+ + + ++EER R F F +PV++ ELT++ EI LQ I+D+ + +P +LP ++ +IKD K +Y
Sbjct: 14 LFQAIVNDMKSSYPIWEDFNSKATKLHSQLRTTVLAAVAFLDAFQKVADMATNTRGATRDIGSALTRMCMRHRSIETKLRQFTNALLESLINPLQERIEDWKKAANQLDKDHAKEYKRARHEIKKKSSDTLKLQKKARKELLGKGDLQPQLDSALQDVNDMYLLLEETEKQAVRRALIEERGRFCTFITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPHKLPPASEQVIKDLKGSDY 254 The following BLAST results are available for this feature:
BLAST of TCONS_00011588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.