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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011582 ID=TCONS_00011582|Name=TCONS_00011582|organism=Clytia hemisphaerica|type=transcript|length=1725bp
TTgcctttttctcttctttttgtGTGCGCTATGTATATTTACAAATGTTT
AGTTCTTCTGTTTATCAGTGAAGTGTCGTAAAatatttgtttgaaatttt
tgtgttCAAATGCTGGCGAGCGAACGACATGTTGAGGAAAACAGAACAGA
AGTattcCATTGAAATTCCTCGCACACCAATGCTGAGAAATACGCAACCA
GAGATACAAAATACTCAAGTTTCATCAATTGAATCTGATGATTCAGAGGG
CCTATGGACGGGCGACGTGGAGTCGTGTTTCCAGGAAGCGCTCCGAATGT
ACCCACCGTGCGGCCGCCAGAAGATCATGATTTCATCACGTGATAAGATG
TACGGACGTAACGAATTGATTGCCAAACACATCCTCAACATGACAGGAAA
AGTTCGAACTCGTAAACAAGTGGCCAGTCATATTCAAGTTCTCGCTCGAA
AGCGCGTACGTGTCCTCTCCTCCAAACAGAGATCTATGCTGCCGCCCAAT
ATGATAGCACCCTGTCTGCCACGCCGACATTATTTGACACCCCAGCAGTC
ACGTGGGCAAATCTACAGCCAATACGTAAAATCCTGTCAAGAACCACCTC
CGCCGCCTTTAAGTCACTCAACTCCAATGTCCAGTCCTTTTGATCAAGCG
CCCTACCATACGGGTGTTCCCGCCCAATCAACACCCATCTACGATAACAT
GCCAGagcttcatcatcatcatttccGTCACGAGCAGCGACGTTATGCGG
CAACCAAGATACCTTACGTTCTCTCTCCGCCCTTTCCACCTCACGCCTCC
CCACCAAACAACAGGTACCACCTGCATCACGATCAACCTCCTCAACATAG
TTTCACCCACGCTGATTACCCATCTACGAACGAAAACATTCACCCATCCG
TTATCAGTGATCATGCATTAGATACTTACAATATAAAACACGAACTTCCA
CATTCCACTCTTTATCCACCACCGCCTGAGCGAGAACTGAAGCCACAGCT
ACCGCACTACCAGCCTGCACCCTCTCATCTCCACAATCCGCACTCATTGG
TACCACTAACGGCATCAAAACAAATAGGATATTTTCCACCACCCACCACC
ACCAGTCCACTAACGCATCCTCATCTCCACAACTCCACCCTTCAACCAAC
CCAACCAATGGAAGATTGGCGGTCACTTCAAAATAACTCTTATCAATTCA
CCGACAACCAACGAACATTCACCGACAACCAACGAACATTCACCGACAAC
CAACGAGACATTCCAATCATGCTGCCCCAAAATCTTCCGCGAATGACGTC
ACCTAATTACCAGCAACCACTTTCCGAAGAACATCCGATTTTAACGAAAG
CTCCATCTTTGATAGACGTTTGTTCGAAAGAGggattgaaaaattctttt
gacgAGGAGGATCATGAGGATAGTAAATCGCGTAAAGATTCTGGTCGAGG
TAGTTCAGCTGGTTCTGAAGTTCTCGATGGTCTGTTAGACCTGGAACCTT
TCCAACATACTTTTTAAATGTATTACATAATGTTTTAGGGCGttagattt
tttatgactttttgtaCAGTTCTTTGTTATATTTCAACAAGTTATACATA
AAGCTTTCGTGTCACCCTAATCCTTTTCAGCTTCTCGAATGTTCTTTATT
AAAATACTCTCTACTTTGTCTACCTTAgcggccctttttacgctggccct
tattggcgttatttttaggctcGTG Run BLAST on NCBI protein sequence of TCONS_00011582-protein >TCONS_00011582-protein ID=TCONS_00011582-protein|Name=TCONS_00011582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MLRKTEQKYSIEIPRTPMLRNTQPEIQNTQVSSIESDDSEGLWTGDVESC
FQEALRMYPPCGRQKIMISSRDKMYGRNELIAKHILNMTGKVRTRKQVAS
HIQVLARKRVRVLSSKQRSMLPPNMIAPCLPRRHYLTPQQSRGQIYSQYV
KSCQEPPPPPLSHSTPMSSPFDQAPYHTGVPAQSTPIYDNMPELHHHHFR
HEQRRYAATKIPYVLSPPFPPHASPPNNRYHLHHDQPPQHSFTHADYPST
NENIHPSVISDHALDTYNIKHELPHSTLYPPPPERELKPQLPHYQPAPSH
LHNPHSLVPLTASKQIGYFPPPTTTSPLTHPHLHNSTLQPTQPMEDWRSL
QNNSYQFTDNQRTFTDNQRTFTDNQRDIPIMLPQNLPRMTSPNYQQPLSE
EHPILTKAPSLIDVCSKEGLKNSFDEEDHEDSKSRKDSGRGSSAGSEVLD
GLLDLEPFQHTF Run BLAST on NCBI transcript from alignment at sc0000130:360839..362922- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011582 ID=TCONS_00011582|Name=TCONS_00011582|organism=Clytia hemisphaerica|type=transcript|length=2084bp|location=Sequence derived from alignment at sc0000130:360839..362922- (Clytia hemisphaerica)
TTGCCTTTTTCTCTTCTTTTTGTGTGCGCTATGTATATTTACAAATGTTT
AGTTCTTCTGTTTATCAGTGAAGTGTCGTAAAATATTTGTTTGAAATTTT
TGTGTTCAAATGCTGGCGAGCGAACGACATGTTGAGGAAAACAGAACAGA
AGTGTGAGTCTTTCGAATGTTAATTTTTCCTTATTGAAAACTTGTAAATT
GCTTGTTTTTACTGATGAATGGTTGTTTTATTTTACTGCTTTGTTGTACT
TCCTAAATTGATATCTTTCAACACGACGAAGGTACGTCAGCATTTTAAGT
TTTTTGTTATTTTTTTCTAATGTAACTCTGAGTTCTTTTGTTTTGTTTTC
GCAAACATTTCACGAAATTATGTACAAATTGAGGATATATTTTTTTGGAA
TTCGTTGAAGAATGTTTTACAAATATTCATTCCATTAAGAGAAATTTAAG
TGAACATTTCTAGGAGGGTTTTCAAACAAATTATCTTAAAAACTGTCGTT
TCTTTTTTTCAGATTCCATTGAAATTCCTCGCACACCAATGCTGAGAAAT
ACGCAACCAGAGATACAAAATACTCAAGTTTCATCAATTGAATCTGATGA
TTCAGAGGGCCTATGGACGGGCGACGTGGAGTCGTGTTTCCAGGAAGCGC
TCCGAATGTACCCACCGTGCGGCCGCCAGAAGATCATGATTTCATCACGT
GATAAGATGTACGGACGTAACGAATTGATTGCCAAACACATCCTCAACAT
GACAGGAAAAGTTCGAACTCGTAAACAAGTGGCCAGTCATATTCAAGTTC
TCGCTCGAAAGCGCGTACGTGTCCTCTCCTCCAAACAGAGATCTATGCTG
CCGCCCAATATGATAGCACCCTGTCTGCCACGCCGACATTATTTGACACC
CCAGCAGTCACGTGGGCAAATCTACAGCCAATACGTAAAATCCTGTCAAG
AACCACCTCCGCCGCCTTTAAGTCACTCAACTCCAATGTCCAGTCCTTTT
GATCAAGCGCCCTACCATACGGGTGTTCCCGCCCAATCAACACCCATCTA
CGATAACATGCCAGAGCTTCATCATCATCATTTCCGTCACGAGCAGCGAC
GTTATGCGGCAACCAAGATACCTTACGTTCTCTCTCCGCCCTTTCCACCT
CACGCCTCCCCACCAAACAACAGGTACCACCTGCATCACGATCAACCTCC
TCAACATAGTTTCACCCACGCTGATTACCCATCTACGAACGAAAACATTC
ACCCATCCGTTATCAGTGATCATGCATTAGATACTTACAATATAAAACAC
GAACTTCCACATTCCACTCTTTATCCACCACCGCCTGAGCGAGAACTGAA
GCCACAGCTACCGCACTACCAGCCTGCACCCTCTCATCTCCACAATCCGC
ACTCATTGGTACCACTAACGGCATCAAAACAAATAGGATATTTTCCACCA
CCCACCACCACCAGTCCACTAACGCATCCTCATCTCCACAACTCCACCCT
TCAACCAACCCAACCAATGGAAGATTGGCGGTCACTTCAAAATAACTCTT
ATCAATTCACCGACAACCAACGAACATTCACCGACAACCAACGAACATTC
ACCGACAACCAACGAGACATTCCAATCATGCTGCCCCAAAATCTTCCGCG
AATGACGTCACCTAATTACCAGCAACCACTTTCCGAAGAACATCCGATTT
TAACGAAAGCTCCATCTTTGATAGACGTTTGTTCGAAAGAGGGATTGAAA
AATTCTTTTGACGAGGAGGATCATGAGGATAGTAAATCGCGTAAAGATTC
TGGTCGAGGTAGTTCAGCTGGTTCTGAAGTTCTCGATGGTCTGTTAGACC
TGGAACCTTTCCAACATACTTTTTAAATGTATTACATAATGTTTTAGGGC
GTTAGATTTTTTATGACTTTTTGTACAGTTCTTTGTTATATTTCAACAAG
TTATACATAAAGCTTTCGTGTCACCCTAATCCTTTTCAGCTTCTCGAATG
TTCTTTATTAAAATACTCTCTACTTTGTCTACCTTAGCGGCCCTTTTTAC
GCTGGCCCTTATTGGCGTTATTTTTAGGCTCGTG Coding sequence (CDS) from alignment at sc0000130:360839..362922- >TCONS_00011582 ID=TCONS_00011582|Name=TCONS_00011582|organism=Clytia hemisphaerica|type=CDS|length=2778bp|location=Sequence derived from alignment at sc0000130:360839..362922- (Clytia hemisphaerica)
ATTCCATTGAAATTCCTCGCACACCAATGCTGAGAAATACGCAACCAGAG
ATACAAAATACTCAAGTTTCATCAATTGAATCTGATGATTCAGAGGGCCT
ATGGACGGGCGACGTGGAGTCGTGTTTCCAGGAAGCGCTCCGAATGTACC
CACCGTGCGGCCGCCAGAAGATCATGATTTCATCACGTGATAAGATGTAC
GGACGTAACGAATTGATTGCCAAACACATCCTCAACATGACAGGAAAAGT
TCGAACTCGTAAACAAGTGGCCAGTCATATTCAAGTTCTCGCTCGAAAGC
GCGTACGTGTCCTCTCCTCCAAACAGAGATCTATGCTGCCGCCCAATATG
ATAGCACCCTGTCTGCCACGCCGACATTATTTGACACCCCAGCAGTCACG
TGGGCAAATCTACAGCCAATACGTAAAATCCTGTCAAGAACCACCTCCGC
CGCCTTTAAGTCACTCAACTCCAATGTCCAGTCCTTTTGATCAAGCGCCC
TACCATACGGGTGTTCCCGCCCAATCAACACCCATCTACGATAACATGCC
AGAGCTTCATCATCATCATTTCCGTCACGAGCAGCGACGTTATGCGGCAA
CCAAGATACCTTACGTTCTCTCTCCGCCCTTTCCACCTCACGCCTCCCCA
CCAAACAACAGGTACCACCTGCATCACGATCAACCTCCTCAACATAGTTT
CACCCACGCTGATTACCCATCTACGAACGAAAACATTCACCCATCCGTTA
TCAGTGATCATGCATTAGATACTTACAATATAAAACACGAACTTCCACAT
TCCACTCTTTATCCACCACCGCCTGAGCGAGAACTGAAGCCACAGCTACC
GCACTACCAGCCTGCACCCTCTCATCTCCACAATCCGCACTCATTGGTAC
CACTAACGGCATCAAAACAAATAGGATATTTTCCACCACCCACCACCACC
AGTCCACTAACGCATCCTCATCTCCACAACTCCACCCTTCAACCAACCCA
ACCAATGGAAGATTGGCGGTCACTTCAAAATAACTCTTATCAATTCACCG
ACAACCAACGAACATTCACCGACAACCAACGAACATTCACCGACAACCAA
CGAGACATTCCAATCATGCTGCCCCAAAATCTTCCGCGAATGACGTCACC
TAATTACCAGCAACCACTTTCCGAAGAACATCCGATTTTAACGAAAGCTC
CATCTTTGATAGACGTTTGTTCGAAAGAGGGATTGAAAAATTCTTTTGAC
GAGGAGGATCATGAGGATAGTAAATCGCGTAAAGATTCTGGTCGAGGTAG
TTCAGCTGGTTCTGAAGTTCTCGATGGTCTGTTAGACCTGGAACCTTTCC
AACATACTTTTTAAATGTTGAGGAAAACAGAACAGAAGTATTCCATTGAA
ATTCCTCGCACACCAATGCTGAGAAATACGCAACCAGAGATACAAAATAC
TCAAGTTTCATCAATTGAATCTGATGATTCAGAGGGCCTATGGACGGGCG
ACGTGGAGTCGTGTTTCCAGGAAGCGCTCCGAATGTACCCACCGTGCGGC
CGCCAGAAGATCATGATTTCATCACGTGATAAGATGTACGGACGTAACGA
ATTGATTGCCAAACACATCCTCAACATGACAGGAAAAGTTCGAACTCGTA
AACAAGTGGCCAGTCATATTCAAGTTCTCGCTCGAAAGCGCGTACGTGTC
CTCTCCTCCAAACAGAGATCTATGCTGCCGCCCAATATGATAGCACCCTG
TCTGCCACGCCGACATTATTTGACACCCCAGCAGTCACGTGGGCAAATCT
ACAGCCAATACGTAAAATCCTGTCAAGAACCACCTCCGCCGCCTTTAAGT
CACTCAACTCCAATGTCCAGTCCTTTTGATCAAGCGCCCTACCATACGGG
TGTTCCCGCCCAATCAACACCCATCTACGATAACATGCCAGAGCTTCATC
ATCATCATTTCCGTCACGAGCAGCGACGTTATGCGGCAACCAAGATACCT
TACGTTCTCTCTCCGCCCTTTCCACCTCACGCCTCCCCACCAAACAACAG
GTACCACCTGCATCACGATCAACCTCCTCAACATAGTTTCACCCACGCTG
ATTACCCATCTACGAACGAAAACATTCACCCATCCGTTATCAGTGATCAT
GCATTAGATACTTACAATATAAAACACGAACTTCCACATTCCACTCTTTA
TCCACCACCGCCTGAGCGAGAACTGAAGCCACAGCTACCGCACTACCAGC
CTGCACCCTCTCATCTCCACAATCCGCACTCATTGGTACCACTAACGGCA
TCAAAACAAATAGGATATTTTCCACCACCCACCACCACCAGTCCACTAAC
GCATCCTCATCTCCACAACTCCACCCTTCAACCAACCCAACCAATGGAAG
ATTGGCGGTCACTTCAAAATAACTCTTATCAATTCACCGACAACCAACGA
ACATTCACCGACAACCAACGAACATTCACCGACAACCAACGAGACATTCC
AATCATGCTGCCCCAAAATCTTCCGCGAATGACGTCACCTAATTACCAGC
AACCACTTTCCGAAGAACATCCGATTTTAACGAAAGCTCCATCTTTGATA
GACGTTTGTTCGAAAGAGGGATTGAAAAATTCTTTTGACGAGGAGGATCA
TGAGGATAGTAAATCGCGTAAAGATTCTGGTCGAGGTAGTTCAGCTGGTT
CTGAAGTTCTCGATGGTCTGTTAGACCTGGAACCTTTCCAACATACTTTT
TAAATGTTGAGGAAAACAGAACAGAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011582-exon-sc0000130-1575043694:362770..362922 | TCONS_00011582-exon-sc0000130-1575043694:362770..362922 | Clytia hemisphaerica | exon |
| TCONS_00011582-exon-sc0000130-1575043694:360839..362410 | TCONS_00011582-exon-sc0000130-1575043694:360839..362410 | Clytia hemisphaerica | exon |
| TCONS_00011582-exon-sc0000130-1510915933:362770..362922 | TCONS_00011582-exon-sc0000130-1510915933:362770..362922 | Clytia hemisphaerica | exon |
| TCONS_00011582-exon-sc0000130-1510915933:360839..362410 | TCONS_00011582-exon-sc0000130-1510915933:360839..362410 | Clytia hemisphaerica | exon |
| TCONS_00011582-exon-sc0000130-1491911889:362770..362922 | TCONS_00011582-exon-sc0000130-1491911889:362770..362922 | Clytia hemisphaerica | exon |
| TCONS_00011582-exon-sc0000130-1491911889:360839..362410 | TCONS_00011582-exon-sc0000130-1491911889:360839..362410 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:360839..362922 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000818 | TEA/ATTS_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00011582 vs. Swiss-Prot (Human)
Match: TEAD3 (Transcriptional enhancer factor TEF-5 OS=Homo sapiens GN=TEAD3 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 5.082e-28 Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 3
Query: 237 DDSEGLWTGDVESCFQEALRMYPPCGRQKIMISSRDKMYGRNELIAKHILNMTGKVRTRKQVASHIQVLARKRVR 461
+D+EG+W+ D+E FQEAL +YPPCGR+KI++S KMYGRNELIA++I TGK RTRKQV+SHIQVLARK+VR
Sbjct: 29 NDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVR 103
The following BLAST results are available for this feature:
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