TCONS_00011581 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011581
Unique NameTCONS_00011581
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011581 ID=TCONS_00011581|Name=TCONS_00011581|organism=Clytia hemisphaerica|type=transcript|length=1781bp
GTGTCGTAAAatatttgtttgaaatttttgtgttCAAATGCTGGCGAGCG
AACGACATGTTGAGGAAAACAGAACAGAAGTGTGAGTCTTTCGAATGTTA
ATTTTTCCTTattgaaaacttgtaaattgCTTGTTTTTACTGATGAATGG
TTGTTTTATTTTACTGCTTTGTTGTACTTCCTAAATTGATATCTTTCAAC
ACGACGAAGattcCATTGAAATTCCTCGCACACCAATGCTGAGAAATACG
CAACCAGAGATACAAAATACTCAAGTTTCATCAATTGAATCTGATGATTC
AGAGGGCCTATGGACGGGCGACGTGGAGTCGTGTTTCCAGGAAGCGCTCC
GAATGTACCCACCGTGCGGCCGCCAGAAGATCATGATTTCATCACGTGAT
AAGATGTACGGACGTAACGAATTGATTGCCAAACACATCCTCAACATGAC
AGGAAAAGTTCGAACTCGTAAACAAGTGGCCAGTCATATTCAAGTTCTCG
CTCGAAAGCGCGTACGTGTCCTCTCCTCCAAACAGAGATCTATGCTGCCG
CCCAATATGATAGCACCCTGTCTGCCACGCCGACATTATTTGACACCCCA
GCAGTCACGTGGGCAAATCTACAGCCAATACGTAAAATCCTGTCAAGAAC
CACCTCCGCCGCCTTTAAGTCACTCAACTCCAATGTCCAGTCCTTTTGAT
CAAGCGCCCTACCATACGGGTGTTCCCGCCCAATCAACACCCATCTACGA
TAACATGCCAGagcttcatcatcatcatttccGTCACGAGCAGCGACGTT
ATGCGGCAACCAAGATACCTTACGTTCTCTCTCCGCCCTTTCCACCTCAC
GCCTCCCCACCAAACAACAGGTACCACCTGCATCACGATCAACCTCCTCA
ACATAGTTTCACCCACGCTGATTACCCATCTACGAACGAAAACATTCACC
CATCCGTTATCAGTGATCATGCATTAGATACTTACAATATAAAACACGAA
CTTCCACATTCCACTCTTTATCCACCACCGCCTGAGCGAGAACTGAAGCC
ACAGCTACCGCACTACCAGCCTGCACCCTCTCATCTCCACAATCCGCACT
CATTGGTACCACTAACGGCATCAAAACAAATAGGATATTTTCCACCACCC
ACCACCACCAGTCCACTAACGCATCCTCATCTCCACAACTCCACCCTTCA
ACCAACCCAACCAATGGAAGATTGGCGGTCACTTCAAAATAACTCTTATC
AATTCACCGACAACCAACGAACATTCACCGACAACCAACGAACATTCACC
GACAACCAACGAGACATTCCAATCATGCTGCCCCAAAATCTTCCGCGAAT
GACGTCACCTAATTACCAGCAACCACTTTCCGAAGAACATCCGATTTTAA
CGAAAGCTCCATCTTTGATAGACGTTTGTTCGAAAGAGggattgaaaaat
tcttttgacgAGGAGGATCATGAGGATAGTAAATCGCGTAAAGATTCTGG
TCGAGGTAGTTCAGCTGGTTCTGAAGTTCTCGATGGTCTGTTAGACCTGG
AACCTTTCCAACATACTTTTTAAATGTATTACATAATGTTTTAGGGCGtt
agattttttatgactttttgtaCAGTTCTTTGTTATATTTCAACAAGTTA
TACATAAAGCTTTCGTGTCACCCTAATCCTTTTCAGCTTCTCGAATGTTC
TTTATTAAAATACTCTCTACTTTGTCTACCTTAgcggccctttttacgct
ggcccttattggcgttatttttaggctcGTG
Run BLAST on NCBI

transcript from alignment at sc0000130:360839..362850-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011581 ID=TCONS_00011581|Name=TCONS_00011581|organism=Clytia hemisphaerica|type=transcript|length=2012bp|location=Sequence derived from alignment at sc0000130:360839..362850- (Clytia hemisphaerica)
GTGTCGTAAAATATTTGTTTGAAATTTTTGTGTTCAAATGCTGGCGAGCG
AACGACATGTTGAGGAAAACAGAACAGAAGTGTGAGTCTTTCGAATGTTA
ATTTTTCCTTATTGAAAACTTGTAAATTGCTTGTTTTTACTGATGAATGG
TTGTTTTATTTTACTGCTTTGTTGTACTTCCTAAATTGATATCTTTCAAC
ACGACGAAGGTACGTCAGCATTTTAAGTTTTTTGTTATTTTTTTCTAATG
TAACTCTGAGTTCTTTTGTTTTGTTTTCGCAAACATTTCACGAAATTATG
TACAAATTGAGGATATATTTTTTTGGAATTCGTTGAAGAATGTTTTACAA
ATATTCATTCCATTAAGAGAAATTTAAGTGAACATTTCTAGGAGGGTTTT
CAAACAAATTATCTTAAAAACTGTCGTTTCTTTTTTTCAGATTCCATTGA
AATTCCTCGCACACCAATGCTGAGAAATACGCAACCAGAGATACAAAATA
CTCAAGTTTCATCAATTGAATCTGATGATTCAGAGGGCCTATGGACGGGC
GACGTGGAGTCGTGTTTCCAGGAAGCGCTCCGAATGTACCCACCGTGCGG
CCGCCAGAAGATCATGATTTCATCACGTGATAAGATGTACGGACGTAACG
AATTGATTGCCAAACACATCCTCAACATGACAGGAAAAGTTCGAACTCGT
AAACAAGTGGCCAGTCATATTCAAGTTCTCGCTCGAAAGCGCGTACGTGT
CCTCTCCTCCAAACAGAGATCTATGCTGCCGCCCAATATGATAGCACCCT
GTCTGCCACGCCGACATTATTTGACACCCCAGCAGTCACGTGGGCAAATC
TACAGCCAATACGTAAAATCCTGTCAAGAACCACCTCCGCCGCCTTTAAG
TCACTCAACTCCAATGTCCAGTCCTTTTGATCAAGCGCCCTACCATACGG
GTGTTCCCGCCCAATCAACACCCATCTACGATAACATGCCAGAGCTTCAT
CATCATCATTTCCGTCACGAGCAGCGACGTTATGCGGCAACCAAGATACC
TTACGTTCTCTCTCCGCCCTTTCCACCTCACGCCTCCCCACCAAACAACA
GGTACCACCTGCATCACGATCAACCTCCTCAACATAGTTTCACCCACGCT
GATTACCCATCTACGAACGAAAACATTCACCCATCCGTTATCAGTGATCA
TGCATTAGATACTTACAATATAAAACACGAACTTCCACATTCCACTCTTT
ATCCACCACCGCCTGAGCGAGAACTGAAGCCACAGCTACCGCACTACCAG
CCTGCACCCTCTCATCTCCACAATCCGCACTCATTGGTACCACTAACGGC
ATCAAAACAAATAGGATATTTTCCACCACCCACCACCACCAGTCCACTAA
CGCATCCTCATCTCCACAACTCCACCCTTCAACCAACCCAACCAATGGAA
GATTGGCGGTCACTTCAAAATAACTCTTATCAATTCACCGACAACCAACG
AACATTCACCGACAACCAACGAACATTCACCGACAACCAACGAGACATTC
CAATCATGCTGCCCCAAAATCTTCCGCGAATGACGTCACCTAATTACCAG
CAACCACTTTCCGAAGAACATCCGATTTTAACGAAAGCTCCATCTTTGAT
AGACGTTTGTTCGAAAGAGGGATTGAAAAATTCTTTTGACGAGGAGGATC
ATGAGGATAGTAAATCGCGTAAAGATTCTGGTCGAGGTAGTTCAGCTGGT
TCTGAAGTTCTCGATGGTCTGTTAGACCTGGAACCTTTCCAACATACTTT
TTAAATGTATTACATAATGTTTTAGGGCGTTAGATTTTTTATGACTTTTT
GTACAGTTCTTTGTTATATTTCAACAAGTTATACATAAAGCTTTCGTGTC
ACCCTAATCCTTTTCAGCTTCTCGAATGTTCTTTATTAAAATACTCTCTA
CTTTGTCTACCTTAGCGGCCCTTTTTACGCTGGCCCTTATTGGCGTTATT
TTTAGGCTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006489XLOC_006489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011581-exon-sc0000130-1575043694:362642..362850TCONS_00011581-exon-sc0000130-1575043694:362642..362850Clytia hemisphaericaexon
TCONS_00011581-exon-sc0000130-1575043694:360839..362410TCONS_00011581-exon-sc0000130-1575043694:360839..362410Clytia hemisphaericaexon
TCONS_00011581-exon-sc0000130-1510915933:362642..362850TCONS_00011581-exon-sc0000130-1510915933:362642..362850Clytia hemisphaericaexon
TCONS_00011581-exon-sc0000130-1510915933:360839..362410TCONS_00011581-exon-sc0000130-1510915933:360839..362410Clytia hemisphaericaexon
TCONS_00011581-exon-sc0000130-1491911889:362642..362850TCONS_00011581-exon-sc0000130-1491911889:362642..362850Clytia hemisphaericaexon
TCONS_00011581-exon-sc0000130-1491911889:360839..362410TCONS_00011581-exon-sc0000130-1491911889:360839..362410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:360839..362850 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.42669	2.28759	1.71163	1.32241	1.40696	1.27701	4.31337	4.23403	4.46952	5.16334	2.37795	2.70783	0	0	1.04833	2.58632	0.750423	1.08218	0.680194	0	0	0	0	0
Blast
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BLAST of TCONS_00011581 vs. Swiss-Prot (Human)
Match: TEAD3 (Transcriptional enhancer factor TEF-5 OS=Homo sapiens GN=TEAD3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.514e-28
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 2 
Query:  293 DDSEGLWTGDVESCFQEALRMYPPCGRQKIMISSRDKMYGRNELIAKHILNMTGKVRTRKQVASHIQVLARKRVR 517
            +D+EG+W+ D+E  FQEAL +YPPCGR+KI++S   KMYGRNELIA++I   TGK RTRKQV+SHIQVLARK+VR
Sbjct:   29 NDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVR 103
The following BLAST results are available for this feature:
BLAST of TCONS_00011581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEAD34.514e-2868.00Transcriptional enhancer factor TEF-5 OS=Homo sapi... [more]
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