TCONS_00011570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011570
Unique NameTCONS_00011570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011570 ID=TCONS_00011570|Name=TCONS_00011570|organism=Clytia hemisphaerica|type=transcript|length=2142bp
AAGCATGATaaaaagcaagcaaaaaaaagataCTTATTTTGAATACGATC
TTCCGAAGAAAACCATTCGTCTTTAATAAGAGGGAGAGGATTacaaaggt
gtaaaaaatttcatttttgagaCAGGGGAAAGAAATATGTGGACCTAAAT
GGACCCATCTAAGGTTCGAGAAGGCAAAGTAGTTCAAGAAAGCAATTTTT
CAGATATTAATATTTTCGAAACACTCAAAAATCACGACTTCAGTAGATCC
ATGCATGCTTTAACCGAATCTGTTTGGGAGGTCATCTCCTGGAAATCCAA
ATCACGTTATGACACAGCCAGTGATCAATACACTCGTATCTTCATGCCAA
AACTCTTCATTATCTCATCCCTTATCATGGCGTTCAGTTATTTCAACGAT
AAATTAAACTGTCTTGTCCATAAACGGTTGGAAACATCAAAAGATTTTGT
TCAAGAGACATGTTGGATTCAAGGCTTTTACATTTACCATGAGATGGAGG
ACCATTTGACCAATTCAGCTTTTTACGGTATTCCTGAAGAAACTTCCAAA
GACGGAATGAATATCAACGGGGCTTTGTGTGAGACGAAGAATAGACAGAA
AGAAAATCAACCTCATTGCAGACCAATGACCAGAAGGTATTTTTTACATT
ATCAATGGATACCATTCTACGTGTGCAGTCTGGCTGTCCTTTACTTCTTC
CCTTATCTCATCTTCAAGTTTGGCAACGCAGATCTCATCTCACTGGTGGA
TTACATCAGAACTGGTGGTTTCAAAGATGTCGACAAAATCGTCAACAACT
ATTTCAATTATAAGATCAATtcgaaattgaagatgagactTATAGTTTGG
TTcaatattttcatcaagCTTTTGTTCATCCTGGTCAACGTATCCGGTTT
CATTTTGACGGACTTCGTGATGGGCGGACGTTTTTTGTCGTACGGCCCGA
GCTGGTTGCGTTGGAACGAACTACCCAATGATGTTGCTCACAATCTGATG
AAGTCACCAGCACCGAAACCTGGAGATTATTTCCTTCCTTCGGTTGGTCT
GTGTAATATCCATGAAATGTTGAAAAATGAGCGAGCCACATACACGGATG
AACACGTGGTGATTTGTGAGATCAGTCAAAACATTCGTTATCAATACATC
TTCATCATCCTCTGGTTCTTCTTCGTCATGGGTTGCTTGATATCTGTCCT
CGGTTTGGTGCAAAGTCTCTTCGTGCTTGCCAAGTCCATGTATTGGGTGA
GCTACCCCAAACACGTGGGAAAGAAATCGTTGTCCGATTGCGTCCATTCA
CAACTCACTCTCAGAGAAATGGAATATCTGGACAAGATTCGACAGATGGA
CATGACAATGTATGGTGAAGTTCTACGCGAGCTGACTCGCTTCAAACCTG
ACATTCACGTCATCAAGAAATTTCAAACAGCTGATGGAGAGGTCATGCTT
TTACCATCTGCACCTCTCGGTCAACACAATGTTTAGTCGTCCAATACaac
cctgtctcgcagccctaatgaaactttttcctacagttgaaatgaaaatt
tctaattGTTCACAGCTCACAATATCCAGTGGGGTTGTTTTGGAGTGGGG
TCGTTTTGGCGTGTCGATTTTACCTGTGAATcttaaattgaaataaaatc
aaattcaatatcCCAGTGAAACTAATTTGTAGGATATATTTCCCACCAGG
ACCCATTTTTGATCAGATTTTCCagagggtctgtgacacaggggtggtAA
GAATGTGTATAGCATCAGTTAAATGACCACATTGTTAACTAAAAAtgcat
ttaaaaataaaagccaaaaattgtaaaaatctcTGAATTCGCGAATATTT
TCAGTCCGATTTTTCGATGATTTAAGTTTTACAAAAGGCCCTGCGGAACA
ACCCTTtaagtggagaggctgaaggctcaaaatgagacaaaatttgCTAG
gagtttcagaaaaaaaatctcattcgCTCAAAAGTGGCTGAAACCTCCCT
AGTCTCCCCACTTCCGCCGGGCCTTTACAATTAATATTCTTGTTTTAGTT
CTCCTAAAACTTTCTGATAAAAattatttgtaagaatttttaatattttc
agtttaataTAGGGTGTAAACTTTTCTACTTAGAATTTTAac
Run BLAST on NCBI

transcript from alignment at sc0000130:289043..293959-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011570 ID=TCONS_00011570|Name=TCONS_00011570|organism=Clytia hemisphaerica|type=transcript|length=4917bp|location=Sequence derived from alignment at sc0000130:289043..293959- (Clytia hemisphaerica)
AAGCATGATAAAAAGCAAGCAAAAAAAAGATACTTATTTTGAATACGATC
TTCCGAAGAAAACCATTCGTCTTTAATAAGAGGGAGAGGATTACAAAGGT
GTAAAAAATTTCATTTTTGAGACAGGGGAAAGAAATATGTGGACCTAAAT
GGACCCATCTAAGGTTCGAGAAGGCAAAGTAGTTCAAGAAAGCAATTTTT
CAGATATTAATATTTTCGAAACACTCAAAAATCACGACTTCAGGTATATT
GTTGTACTTTGCTACAAACCGTCCAACTTACCGTGTTTTGATTAGTGATA
TATTCGAGCCCAGAATTAATGCTGGGAACTTTTCGTACACTAATCAAACA
GTAAAAGTTGACCAGGGGACTAGTTATATTTTCTAAGTACCTTCAAATGT
TAAGAAAAAGACCCTGCTCTTCAATAACATATTTAACTTTTCTAACACGC
TCTTTCTCATTTCTTCTTGCAGTAGATCCATGCATGCTTTAACCGAATCT
GTTTGGGAGGTCATCTCCTGGAAATCCAAATCACGTTATGACACAGCCAG
TGATCAATACACTCGTATCTTCATGCCAAAACTCTTCATTATCTCATCCC
TTATCATGGCGTTCAGTTATTTCAACGATAAATTAAACTGTCTTGTCCAT
AAACGGTTGGAAACATCAAAAGATTTTGTTCAAGAGACATGTTGGATTCA
AGGCTTTTACATTTACCATGAGATGGAGGACCATTTGACCAATTCAGCTT
TTTACGGTATTCCTGAAGAAACTTCCAAAGACGGAATGAATATCAACGGT
TAGTCCACTTCTCCCAAAGGGAGATGCATCTTATTTTCGCCCGATCTGTC
TCGTCTCATCTCTGTCTCTTTACACTCCTGTCTCAGTGTACATCCTATCT
CAGTTCTTTAGCATCACCCCATCCATGTATTATTAAATAGCGAGTTTATG
TATTTGCACTTTTGAGGGCGGATCCAAATCGAGTACGGTAAAAGTGCTGA
TTTATACCTTCGTCCAAAGTCTGTCAGGATATAGATAAATTAGAAACTTA
CCGTCTCCGTCACAGGAAAACACACATACATAAACTCGCTGATTGCTGTC
TTAGGACAGTATTTTCAAACAAACTTTTCTGACACCTTTTGCAATGAGGA
TCAAAGAAAATCATCTAGCTTATCTCGCACCGTTTTGCTTACACAGCAGT
TTTTAAAAATAAACATATAAAAAATTCCTCCTCCCCCACACTGTGTGATC
ACAAATGTTAAGAAACTCTTTTATTAAATCTGAATTGTCAAAATACACCT
TTTTGACCGTAGCCACCAATTACTACGTGGTCATTTTTTCGTCCGTTTTA
CCACCCTAAAACTGTCCCAGTCTTTTTTTCGCGACTAAAGACAATAGAAA
AAAGTGTAAAAAAAGAATTGGGTAGAGTCTAGGGTGGTAAATTAAATAAT
AAAGTGGCAAGCGCCTGACCGCGTGACTACGGTCGAAAAGGTGTATATAA
GGCACACCCCCTTTCCATATCATGAAAAGATATGACCTTTAAACAACAAA
CTTTTTCTTGTAGGGGCTTTGTGTGAGACGAAGAATAGACAGAAAGAAAA
TCAACCTCATTGCAGACCAATGACCAGAAGGTAGCTGTTGATGCATTAAT
ATTTTGATTCGTTGTTGTCAATAGACCTTTTTCTCTGGAACATATAGTTT
GACCCTCTAGCTTCAACAAGAAGAAAATTCTCGACTGTTTTATTTTTGGA
AAGAAATAATAGGACTTTCATTATAATTTGATTGTTAATAAATATAGAAC
AGAATGGATACAGTCATTGTGTTGCTTTAAATCCTGTAGAAAAGTATACC
ACTTTCATCGTCTCTGTGTCATAAATACTATGCACGATGAACAATGCTAC
AGGCTTTTTTATAAGAATATACTCCCGGGGGGTGGCTCGATTCAAAAAGG
CCTTAAAGATCGGACAATGACAGTGCAAAGAAGATTTTGCAAAACTTGAG
CAAAAAATCAACCCTTACGGTGCATTTTCTTGAAACCTTTTGACCAATTT
CAGGCAAAATATGGTCAGATTTCAGAATTTTTCTCACCTTTGCTGATTTC
GGCACCTAACAGTGCATTTCGGGAAGCTTGGAAAATATACCCTAAAGGGA
AATACTTATGGTCATTTACCTTAAGTGCCCCCCCCCCTTCGGAATATACT
CTATGAAAATACTCATGGTGATATCGACCAAAAATTAAGAATATCACCAT
CATGGAATATGACAAAGGATATAATCTTTAGTTCGTGCTCATCCTCAAAT
TTCGATCAAAAGAATAGTTCAGGATGATTTTCCCCCAAAAGGTGAAGAAA
AACACGATGAAATGGAAAAGAACGATTCTTATATATACCGTATCTTATAA
AAAAGTGTATATAATTTTCTGTTTGACCATAACCAAGTAAAGGGACACCA
AATTTCTCTTTCACTTTCAGGTATTTTTTACATTATCAATGGATACCATT
CTACGTGTGCAGTCTGGCTGTCCTTTACTTCTTCCCTTATCTCATCTTCA
AGTTTGGCAACGCAGATCTCATCTCACTGGTGGATTACATCAGAACTGGT
GGTTTCAAAGATGTCGACAAAATCGTCAACAACTATTTCAATTATAAGAT
CAATTCGAAATTGAAGATGAGACTTATAGTTTGGTTCAATATTTTCATCA
AGGTACTTTTTCACTCCTCCTCGATTAGGTTTCCTTCTATTTGTATTGTT
TTCTCAATTATCTGTTCCTCAAAAACGAATAACACAATGACTGCCGAAAA
TAATGCTGTAGAGTAGAGCCGATGGTTGTAGATATTTTATTTCTCTTCTA
TTGCTCCGTTTTATTTAAGGCTTGGGGACACAAGAAGTTTTTTTCGCCTT
GGTGCAATGCAACATGCTCTATCCCACCAAGAAAAAAAGTACGTGTCCCC
AAAAAGTGAGGGAAATACCCAAAAGAAACGCTGATTTTGGTGAAATTTCA
CTTTTATTGGTAGAAAGAAAAATGCGGAGTGGAGACACGAGAAAGCGTTT
CATGTTGGTGGGATGGAGCATGTTGCATTGCACCAACGCGAAGAAAAATT
TTCGTGTCCCCAAGCTAGGATTCTCTTACGAGAAACATTGGAGAGCTCTC
ACAATAATCTCTGAGAAGATCTCAAATTTCTTTTGAATCTCTTTTTGGTA
TGTTTGTGTATGTTTGTCATTGAAGTATCATCAATGTGCATCATTTCAGC
TTTTGTTCATCCTGGTCAACGTATCCGGTTTCATTTTGACGGACTTCGTG
ATGGGCGGACGTTTTTTGTCGTACGGCCCGAGCTGGTTGCGTTGGAACGA
ACTACCCAATGATGTTGCTCACAATCTGATGAAGTCACCAGCACCGAAAC
CTGGAGATTATTTCCTTCCTTCGGTTGGTCTGTGTAATATCCATGAAATG
TTGAAAAATGAGCGAGCCACATACACGGATGAGTAAGTCAAAGTAGTCTG
TACCGGTTGATAAACGTTTTTCATTAAGAAATACACAGCATACTGGTTTC
AGGTACTGGCTGGATTAAACTCTAAAGTCGATTAGCTTTAAGTGTGCACT
CGTTGTTTTCTATGTGGAAACCACACTCTCAACAAAATTATTCTTAATAA
CGATGGTCCCTTTTTACCAGTAACTTTTTAATCGACTACCCTCACATTCA
CCACACAACAATCGTAAAAACATGATTCATTTGAAATATATTGGATAGAA
AATAGAGATTCAAAAAACGTCTTATAAATGCTTATGTTTAGATTATCGAA
GAAGTTCTTGGTAACTATCTCAAGTCAAGTTTTTCGGTTCAATCATGATA
TATTAAATCTTCCATTTCGTTTGCAGACACGTGGTGATTTGTGAGATCAG
TCAAAACATTCGTTATCAATACATCTTCATCATCCTCTGGTTCTTCTTCG
TCATGGGTTGCTTGATATCTGTCCTCGGTTTGGTGCAAAGTCTCTTCGTG
CTTGCCAAGTCCATGTATTGGGTGAGCTACCCCAAACACGTGGGAAAGAA
ATCGTTGTCCGATTGCGTCCATTCACAACTCACTCTCAGAGAAATGGAAT
ATCTGGACAAGATTCGACAGATGGACATGACAATGTATGGTGAAGTTCTA
CGCGAGCTGACTCGCTTCAAACCTGACATTCACGTCATCAAGAAATTTCA
AACAGCTGATGGAGAGGTCATGCTTTTACCATCTGCACCTCTCGGTCAAC
ACAATGTTTAGTCGTCCAATACAACCCTGTCTCGCAGCCCTAATGAAACT
TTTTCCTACAGTTGAAATGAAAATTTCTAATTGTTCACAGCTCACAATAT
CCAGTGGGGTTGTTTTGGAGTGGGGTCGTTTTGGCGTGTCGATTTTACCT
GTGAATCTTAAATTGAAATAAAATCAAATTCAATATCCCAGTGAAACTAA
TTTGTAGGATATATTTCCCACCAGGACCCATTTTTGATCAGATTTTCCAG
AGGGTCTGTGACACAGGGGTGGTAAGAATGTGTATAGCATCAGTTAAATG
ACCACATTGTTAACTAAAAATGCATTTAAAAATAAAAGCCAAAAATTGTA
AAAATCTCTGAATTCGCGAATATTTTCAGTCCGATTTTTCGATGATTTAA
GTTTTACAAAAGGCCCTGCGGAACAACCCTTTAAGTGGAGAGGCTGAAGG
CTCAAAATGAGACAAAATTTGCTAGGAGTTTCAGAAAAAAAATCTCATTC
GCTCAAAAGTGGCTGAAACCTCCCTAGTCTCCCCACTTCCGCCGGGCCTT
TACAATTAATATTCTTGTTTTAGTTCTCCTAAAACTTTCTGATAAAAATT
ATTTGTAAGAATTTTTAATATTTTCAGTTTAATATAGGGTGTAAACTTTT
CTACTTAGAATTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006485XLOC_006485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011570-exon-sc0000130-1575043694:293717..293959TCONS_00011570-exon-sc0000130-1575043694:293717..293959Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1575043694:293162..293487TCONS_00011570-exon-sc0000130-1575043694:293162..293487Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1575043694:292330..292396TCONS_00011570-exon-sc0000130-1575043694:292330..292396Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1575043694:291258..291489TCONS_00011570-exon-sc0000130-1575043694:291258..291489Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1575043694:290478..290710TCONS_00011570-exon-sc0000130-1575043694:290478..290710Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1575043694:289043..290083TCONS_00011570-exon-sc0000130-1575043694:289043..290083Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1510915933:293717..293959TCONS_00011570-exon-sc0000130-1510915933:293717..293959Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1510915933:293162..293487TCONS_00011570-exon-sc0000130-1510915933:293162..293487Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1510915933:292330..292396TCONS_00011570-exon-sc0000130-1510915933:292330..292396Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1510915933:291258..291489TCONS_00011570-exon-sc0000130-1510915933:291258..291489Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1510915933:290478..290710TCONS_00011570-exon-sc0000130-1510915933:290478..290710Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1510915933:289043..290083TCONS_00011570-exon-sc0000130-1510915933:289043..290083Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1491911889:293717..293959TCONS_00011570-exon-sc0000130-1491911889:293717..293959Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1491911889:293162..293487TCONS_00011570-exon-sc0000130-1491911889:293162..293487Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1491911889:292330..292396TCONS_00011570-exon-sc0000130-1491911889:292330..292396Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1491911889:291258..291489TCONS_00011570-exon-sc0000130-1491911889:291258..291489Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1491911889:290478..290710TCONS_00011570-exon-sc0000130-1491911889:290478..290710Clytia hemisphaericaexon
TCONS_00011570-exon-sc0000130-1491911889:289043..290083TCONS_00011570-exon-sc0000130-1491911889:289043..290083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:289043..293959 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.0909304	0	0	0	0.777244	0.542606	0.589275	0.811359	3.55509	2.50628	1.32393	1.94594	2.11911	1.82904	0.221622	0.336663	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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