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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011569 ID=TCONS_00011569|Name=TCONS_00011569|organism=Clytia hemisphaerica|type=transcript|length=451bp
attGACAAGACGATGAAGAAAGATGTCGGCAAACCAACATCCGAGCAAAA
GCAATAGATCCATGCATGCTTTAACCGAATCTGTTTGGGAGGTCATCTCC
TGGAAATCCAAATCACGTTATGACACAGCCAGTGATCAATACACTCGCAT
CTTCATGCCAAAACTATTTATCGTGTCCTCTCTGGTCATGGCTTTTAGCT
ATTTCAATGATAAGTTAAACTGCATGGTTAGCAATAGACTTGATATGTCG
AAAGAATTCGTCCAAGAGACGTGTTGGATTCAAGGTTTTTACATTTACCA
TGAGATGCACACAAAACTAAACGAATCTTCGTATTATGGAATTCCTGAGT
ATACTGGCTACAATGGAGTGAATCGCAAAGGATTGTTGTGCTCAACCGTT
GATCGAGCTGGCGGTAAGAATTATGAATGCATCCCTATGATACGAAGGTA
A Run BLAST on NCBI transcript from alignment at sc0000130:284292..288248- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011569 ID=TCONS_00011569|Name=TCONS_00011569|organism=Clytia hemisphaerica|type=transcript|length=3957bp|location=Sequence derived from alignment at sc0000130:284292..288248- (Clytia hemisphaerica)
ATTGACAAGACGATGAAGAAAGATGTCGGCAAACCAACATCCGAGCAAAA
GCAAGTAAGTTCGTCCCATTTCCCATAATGCAATTCGTTCACACCTCTTC
TACATTTCATTAACAAATTGTTTTCTTTTGCAAAACTTCTATAAAGAAAC
CTGCTCACACATTTGTGTTTTAAGATTTTTCACGATATTTTGTGAGATTC
TTCGAATAGAAAACATTTTAGGAAAGCATCTTCATAAAGAATGAAAGACA
CTTCCTTCAAACACGAGATCTATTTTCTTCAACATGTCATACGTTACGAG
TACAGAGCATTTAGTTTATGTACAATAAAGGAATCACAAGTTTTATTTCT
TTTGCTTCATTCAGGTAAGGTCCTATGTCACCTACTCTAAAGTCTTTTCT
GTCCACTGTTAAAGTTAGTACCGAGTTTATGTGTTTTTCTGCGACAGAGA
TGGTTAGCTTCTGATTTGTCTAATTCTTTATTGACTAAGGACAACGGTAA
ACAAGCACCCGATTTCACAGGTCAAAATGCAGGTTATTCCACAAACCACT
TCAGTCATTCCACCATTCTCAGAAGTGCAAATACATAAACTCGCGACCCC
ATCATGGGCTAACATAAATATGCAACCCCACTAGTTTTATAGTTTTATAG
TTTAACAACATACTAAAAATTTAAGAGTGAGCAGTACCTTCATTTTAAAT
TTTCATCCATTTCATTTATGGATGCATTGGTGTAGGTTAGCTGGTAGTGA
GATTGAAGAAAAACTGACTTTTTATCAAATAGTAGCAATGGAGTTTTTTG
TTGTTGAAAAATCTCGGTTGAGATGTAAGGGTTATAGGTCTTTTATGTTG
AATAATTAAATATGAATCTCGGAAAAGATTTCATGTCCCCCTTTTGTGGT
TTGCTATTTAGAACTGAGCCACAGCGGTGCCAGGAAGTTGAAAGATGAAA
ATCCGAGATCGAAAACAGTCAGAAAAATAATGAAATGTTCAAATGATACA
CCTATTTGAAGGCTATTCTTTGATACTGTAAAAGTATTGATATATGTTAC
ATCGACTATCAGAAAAATAACAATCAAATGAAAAAGAATATTAGAAAATG
AAAGTGAATAAGAATTGATGTTTTTGGTCATTAAGAGTCATTATCCTTTC
AATAAAAGATTTTAATTACTTTCCAATCGGATCTGATACTTGAAGTTTCG
TATTCTTCACTTCGTGTCAGTAGTACTTCTTCCTGACCGATTTTTGACGG
CGTTGCCAGGATAAGAAAAACAAGCTTGGGTAGAATTTAATATGGTATGG
TCCGCACGTCGAGAATAATTCTGCTGAAACACTAATGTTTGTCGTTCGAT
TGATAAGGTAAATTTAGTTATTTGCCCAACATTTTTTTCAGTTGAGAAGA
ACATCAGAGTTCATGACCGAGATCATAACATATATAAGTGCGTAAGATGG
GTGGAATATATGTGCGTAAGATGTGGGTGGAATATGCAAAAAGGATCAGG
TTTTTTAGGGAAGGCTTGAAACACTCCTGCCTCATAGCCCTTTTCTTATA
ACTTTTCCCATAGCGGAGATAAAAATTTCTATAAAGTCTTAAAGGGGACA
GAAATTTTGTTGTTCTACGCTTAAAAAATCCAGCAGAAATGGTTTTTGAC
AATATTTTACACTGAATTCCAAATGAAATTCAATTGAAATTGTAGGGTAT
TTTTTTACCAGGAAGAAAAATTGGCCAATTTTGTTAGTAGGTTTGGGGTC
CCGTCGGGTCTGTGACACGAGGATGTCAAGTTAGAGAATTGTTAATTCAC
ACCGTCAGTCGCTACCACTACATGAAAAAGGTTTTCCCGTTCGGGAAATA
TTCCCCGTTAAGGCAATAGTTGCCTTTCCATATACAGTGATCCCGACTGA
CCGTCAGCCAAGGACCAAAAACGTGAAGTCAGCATAAAAATGTTTGGGTG
GGTGACGAACAAAGCAATGGCTGAAGGGTAATATAATGCAGTTTCCCTGA
AAACCAAAGCAACTTAATTTTTGACGTCAAAAGATTAAAGAGTGAATTTC
TAATGAATAGCTCCATTAATCATCTTTTTTATAAAAGCCGCTCTTTTGCA
TGAAGATTAATGGCTAATTTTACTGATAACCTTTCCAGCTCAAAAAAACA
ATATAAAATCTGTGCTTGGACTGTCTGTAGCATTTTCGGAATGTAGTAAA
TTTATTCCAAAGAATATATATGAAAGTTTTACGAACGAATTTATTGTCAA
CTTGAAGCACCTTGACAACACTAAAAAAGAAAAGCATCACACCCATTTAC
CTTGAATGAGAAAAACTTTTTTCATTTTTACTTTTCTTTTCTTCTTTTGT
TACTGTGACATTAAAATTTAAAAACACCAAAAAAAAGAAGATTTTTGAAG
GAAGGGTTAATTAGACGTCCGTCAATTTTTTGAAAACTTCTTCAATCTTG
AATTATTAGCGGTGAAGCAGAAAAACAAAGAAGAAGAAAATTAACATTAA
CGAGAAGTCCTTCATTTTTTGACAATTTTTTGATTCAAGACTTTGTTGGA
TGAGATTTCCATCAAATTAATTGGTGACCCTTTAATCATCACAATATTTT
GCTCGACCAAAAACAATGAGGAAACATCGAACACAACTCTAAGGAAATGA
ACTGCAAAGCGTAAAACATATTTTTTCACTTCTTCATTTTGCCTAACCTT
TCCCAAAATCAATTTAATACATTGTATCTGAGGGGATTTTGCTTTACTCA
ATTTCTTTTTAACCGACAAATCTAGACAGGTAAACAGACAGAGAGACAAA
GTATTTAGATTATTTTGACCTTTTATTAAACCTTTTATAATTTGCTTCAC
CAGTACTATTTCAATTAACGGTTTTAAGTTTAGGAAAGATTTTTCACAAA
CGTTCGCTTTTTGTAAAGACATTTGTTTTTCATGAAGTCAGTCAGAAAGT
TTGTAAAGTCAATCTAGATGCAAAACTTTTTACTACTGTATAGAAGGTTT
GTCATTTAAGAAATTTCATAAGGGGACAATTATTATTGTGGGTACGATTT
TTCTAGCATATTTTGGGAAAGTTTCGGTCTTACCGAAATTGTAATAAGCT
TAGTGGCGTGCCAAAGAAAAGAAGATGTTTGTGAGCTTTTTATCTAATTA
AGAGGAAGGTAGAATGAGTTAAAAAGGTTTGGTATGACTTATTGAAACCT
ACTCTTCAAACAGAGAGTCAGAAAAATGAGACTGAAATTTTGTTTCTTTT
CTCTTTGCAGTAGATCCATGCATGCTTTAACCGAATCTGTTTGGGAGGTC
ATCTCCTGGAAATCCAAATCACGTTATGACACAGCCAGTGATCAATACAC
TCGCATCTTCATGCCAAAACTATTTATCGTGTCCTCTCTGGTCATGGCTT
TTAGCTATTTCAATGATAAGTTAAACTGCATGGTTAGCAATAGACTTGAT
ATGTCGAAAGAATTCGTCCAAGAGACGTGTTGGATTCAAGGTTTTTACAT
TTACCATGAGATGCACACAAAACTAAACGAATCTTCGTATTATGGAATTC
CTGAGTATACTGGCTACAATGGAGTGAATCGCAAAGGTAATGACTTAATT
GATTGTTCGGTGTGGAAATCACTTTTGACAACTAACAACACTTTTCCCTG
TTTCAATTTTAGACCCAAAGACTGATACTGATCTTTTTTTCCTGACTATC
TCTGATCATTGAAGCATCGTGTTCCCATCCTTCGAAATGGACCTTACCTT
TCCATTTCTGATACAGCAATCAGCATCACTGAGTCAGTGAGACAGGGTTT
GCAAACTTTAATAAAGCTATTTCAATTATCAAGTTGTTGACAAAAAAGAA
ATGTCTTAGTTTTTCCTTTCTCGTTTCATTTGGTAGGATTGTTGTGCTCA
ACCGTTGATCGAGCTGGCGGTAAGAATTATGAATGCATCCCTATGATACG
AAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011569-exon-sc0000130-1575043694:288195..288248 | TCONS_00011569-exon-sc0000130-1575043694:288195..288248 | Clytia hemisphaerica | exon |
| TCONS_00011569-exon-sc0000130-1575043694:284663..284988 | TCONS_00011569-exon-sc0000130-1575043694:284663..284988 | Clytia hemisphaerica | exon |
| TCONS_00011569-exon-sc0000130-1575043694:284292..284362 | TCONS_00011569-exon-sc0000130-1575043694:284292..284362 | Clytia hemisphaerica | exon |
| TCONS_00011569-exon-sc0000130-1510915933:288195..288248 | TCONS_00011569-exon-sc0000130-1510915933:288195..288248 | Clytia hemisphaerica | exon |
| TCONS_00011569-exon-sc0000130-1510915933:284663..284988 | TCONS_00011569-exon-sc0000130-1510915933:284663..284988 | Clytia hemisphaerica | exon |
| TCONS_00011569-exon-sc0000130-1510915933:284292..284362 | TCONS_00011569-exon-sc0000130-1510915933:284292..284362 | Clytia hemisphaerica | exon |
| TCONS_00011569-exon-sc0000130-1491911889:288195..288248 | TCONS_00011569-exon-sc0000130-1491911889:288195..288248 | Clytia hemisphaerica | exon |
| TCONS_00011569-exon-sc0000130-1491911889:284663..284988 | TCONS_00011569-exon-sc0000130-1491911889:284663..284988 | Clytia hemisphaerica | exon |
| TCONS_00011569-exon-sc0000130-1491911889:284292..284362 | TCONS_00011569-exon-sc0000130-1491911889:284292..284362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:284292..288248 - |
Blast
The following BLAST results are available for this feature:
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