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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011554 ID=TCONS_00011554|Name=TCONS_00011554|organism=Clytia hemisphaerica|type=transcript|length=2192bp
GTCAAAATTCGATGATATTTTGGCTGCCCGGTGGATATCTGTGTTGATCG
CATTTCGTTTGTATCGTTTTGGAACTCTCGACTTCCAATGATTAGATTCG
TGTAAAGTACCGAACGAGTTTCGTGCTTACATCCATCACTGCGAAGGAGA
TTACTCTTACTCCAGTGAAGATACTGAAGATTACCGAACAGGATGGGTTG
CCATGGACAACCAACAAAACAACACTGTCAGTCGAAAGCGTCGTGACTTG
ACTTTTGTGATGGCACCGAAACGCCGAGCACGTCGCTCAACATCGAATGG
GGTTTACAAGAATATGGTAACCGGTGCCGGCAAAAAGAGTTCAAAAGCTC
GAAGATTAGCGAAGAAAAGGGCGCCCGGTGGTAAAAGGGTGTATTACGTC
AGCCCTAAGGCTCTCTTGCCTGGCGGTGCTGTTGTCTCCTGTTTTGATCG
CTGGGAGCACCGAACGCAATCTGAACTCAGGGGATTTCCTTTTGTGGGAA
GAATGCTGACGTATGCAGGAAGTGGTTACCATGCCAATCTTGGATACAAC
GAAGAAACAGCGTGGACAGTGATTGCTGATCTTCATTCACATAATTGGTT
CGATGAGCAGACACGCGCCATCTTTATCGAGTTCACTGTCTACAACCCGA
ACGTCAATTTATTCGCAACTGCTTTCCTTTTCACAGAAATGACTCCCACA
GgtGGATCCTTGCCATGggctgatttcaaaattttcaacggATATCGCTA
CTCTGTCAATGTGAACGCAATGAGTCGAGTTGCCGAGCTTATTTTTGTCG
GCTTCGTCATTTATTACACTGTGAAAGAGATCCGTAAACTCCTGAAACAA
AAATGGCAATATTTCCATAGTTTCTTCAACATCATTGAAATTCTACTGAT
ACCCTTATATTGTGCCATGTTTTGCTTACTTTTGGTTCGCTGGTTGACTA
CAGCCAGAAACATCAAAATGTTCAAAGAGAATCCAAAAGATTTCGTGAGT
TTCCAATACGCGGCCACTGCTGACGAAGTTTTGCAAGCCGTCATCGGATT
GGTGGCTTTCTTACTCAACATCAAATTTCTTCGACTTTTCCAATTCGCCA
AAACCTTCTTCAGTATAGGCCTCATCATGAAGACGTTCGTTCATCCGTTG
TTGATGTTCATGGTCCCCNATTCTTCAGTATTGGCCTCATCATGAAGACG
TTCGTTCATCCTTTGTTGATGTTCATGGTCCCCTTTCTCGGTTTCTTCCT
GCTTTTCGCTTACTGCGCCCACCTCGGGTTGGGGACACAGGTATACGAAT
ACAATTCGCTCGGGCGCACGTGTGTTTCGCAATTTCTCCATTTGCTCGGT
GCCGTAGATTTCGAACTAATGCAAGAAGCGCGGCCGTTGTTCGGGCCGCT
GTATTATGTGGCCTTCTCAATGTTCATGTTGAACGTTGTTTTTAACGTTT
GTATCGCCATCATTTGTGAAGCGATCGACGATGATTACGAGGAAGAGTAC
GTCAAGCAAGCAGGTGATATCCAACTCGTCGAATACATGATCACGCGTTT
AAAACGTTTCGTCGGGCGGTACGAAGAGGGCGCGTGGCGTGACCAGTTGG
ATGAAGAAGTGTCTCGGGATAAATACGAAACCTGTGACGCTTTGATGACG
AGATTGGAGAAAAGTGTTGACGAGATACACAAATATGTCTTCCAACAAAC
GGCGAGTTGTAATGAGAAAGAGAAAGGAGAACACGCGAATTTGGGCGTTG
CTATGGAGAACAGTGTAACTGTGGAAAACGTTGAGGAGGAGCATAGTGAG
ACAGGAAGCCGCTCAGTGGAGGAGTGTGATGAAAGAAGCGTCAACGAGAG
AGACGAAGATATGATGCAGATTGAAAGCGAGAAAGAAGAGGAAAATAAAC
AAACGAACGAAAATGAAGACCAAACTGTTGACGAAAACACTACTTCTCTT
GATTCGAACtgaaattttattcattcattttgaATATTGTGATAGTATTA
AAACTTTTTAGAGTGACCTGTGCTATATCAGTCAAggactattgcaaatt
aggataaATGCGAGTATTTAGCCTAAATAGGATAAATTATCCTAGCCTAT
TTAGGATAAAACGAAGAAAAActtaatttattgaataaacttTGAGATCT
GCGTCGAGATTTGCATGACGTCGCTGTAAAATAAGAGTGCCT Run BLAST on NCBI protein sequence of TCONS_00011554-protein >TCONS_00011554-protein ID=TCONS_00011554-protein|Name=TCONS_00011554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MDNQQNNTVSRKRRDLTFVMAPKRRARRSTSNGVYKNMVTGAGKKSSKAR
RLAKKRAPGGKRVYYVSPKALLPGGAVVSCFDRWEHRTQSELRGFPFVGR
MLTYAGSGYHANLGYNEETAWTVIADLHSHNWFDEQTRAIFIEFTVYNPN
VNLFATAFLFTEMTPTGGSLPWADFKIFNGYRYSVNVNAMSRVAELIFVG
FVIYYTVKEIRKLLKQKWQYFHSFFNIIEILLIPLYCAMFCLLLVRWLTT
ARNIKMFKENPKDFVSFQYAATADEVLQAVIGLVAFLLNIKFLRLFQFAK
TFFSIGLIMKTFVHPLLMFMVPXSSVLASS Run BLAST on NCBI transcript from alignment at sc0000130:454671..458223+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011554 ID=TCONS_00011554|Name=TCONS_00011554|organism=Clytia hemisphaerica|type=transcript|length=3553bp|location=Sequence derived from alignment at sc0000130:454671..458223+ (Clytia hemisphaerica)
GTCAAAATTCGATGATATTTTGGCTGCCCGGTGGATATCTGTGTTGATCG
CATTTCGTTTGTATCGTTTTGGAACTCTCGACTTCCAATGATTAGGTAAT
TTATATTCACTACGATAAACGGATGTTTCTATCGTTTCGTTATATTTGAT
TTTTGTGTCCAAGAACTTTGTTGGCGAAACTTCAAttgtgaatttgattt
tttccggTTTAAAATTGTTTAATGCTGTGAAAAGTACATctggtttgttt
ttctttcgtCGATTTATAGAGTCGTCGACATATCGGCGATAGAACAAAGG
CTTCAGGGGTACAACAACTTGTTGTTCTAATTTAGTcataaaaatgttag
aaaacaCTACGGATAACGGACCTCCCATGGTGCATCCATCGGTTTGTTTG
TAGAACTTTCCGTCAAACATAAAGGTGTTTTCTTTGGATAATTTTTCTAA
TAAACGAGTAAAGATTAATTTAGTAGCGATAATTGGTAGTTTTCGTTTGT
TGTATACTTGATCTATAATGTAGTCTATTGTATCCTTGACGGGAACATTG
GTGAATAAGCTTTCTACATCGTATGACACATATTCCTCATCTTCTTGTAA
TGGAGGTTGTTCTTTCAGCATACTTGGAAATTGTTGTGTGTTGTTGATGA
TGTAAGGGAGCATTTTCGTGATGAGAATTTcgattgaaaagttttttctc
gCTCTTGGACATTTATACATACTTTTAAGCAATTTCTCTTTAGAATATAA
TGTCTCTAAGGTAATCACACAAAATGAACTGATTTAGAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCACTGTGCTTTGGATAGGAAAATCTACT
CGCTTTGCAAACAGccaattataaattttcaaagtagATTTTCTCCATTT
CTTTTACTCACAACCGGCCAACCACTGCTTTAGCAAGGGAGTTTTCCAGC
ATAAATTTTCCACTTTAATTCACTTCCCCTTTCTTTTAGATTCGTGTAAA
GTACCGAACGAGTTTCGTGCTTACATCCATCACTGCGAAGGAGATTACTC
TTACTCCAGTGAAGATACTGAAGATTACCGAACAGGATGGGTTGCCATGG
ACAACCAACAAAACAACACTGTCAGTCGAAAGCGTCGTGACTTGACTTTT
GTGATGGCACCGAAACGCCGAGCACGTCGCTCAACATCGAATGGGGTTTA
CAAGAATATGGTAACCGGTGCCGGCAAAAAGAGTTCAAAAGCTCGAAGAT
TAGCGAAGAAAAGGGCGCCCGGTGGTAAAAGGGTGTATTACGTCAGCCCT
AAGGCTCTCTTGCCTGGCGGTGCTGTTGTCTCCTGTTTTGATCGCTGGGA
GCACCGAACGCAATCTGAACTCAGGGGATTTCCTTTTGTGGGAAGAATGC
TGACGTATGCAGGAAGTGGTTACCATGCCAATCTTGGATACAACGAAGAA
ACAGCGTGGACAGTGATTGCTGATCTTCATTCACATAATTGGTTCGATGA
GCAGACACGCGCCATCTTTATCGAGTTCACTGTCTACAACCCGAACGTCA
ATTTATTCGCAACTGCTTTCCTTTTCACAGAAATGACTCCCACAGGTGAG
ACCCtttgagattttttgatttctttgaatttctgTAGCCTCCGTACTTA
CATGTgacaaaacttttctttttcgtgAATTCGTCGATTCAAATCTTCCA
AGTTTCTGCCATTCCTCGTTACTAGtgattaatatttttattttattttt
ttttaactttaggtGGATCCTTGCCATGggctgatttcaaaattttcaac
ggATATCGCTACTCTGTCAATGTGAACGCAATGAGTCGAGTTGCCGAGCT
TATTTTTGTCGGCTTCGTCATTTATTACACTGTGAAAGAGATCCGTAAAC
TCCTGAAACAAAAATGGCAATATTTCCATAGTTTCTTCAACATCATTGAA
ATTCTACTGATACCCTTATATTGTGCCATGTTTTGCTTACTTTTGGTTCG
CTGGTTGACTACAGCCAGAAACATCAAAATGTTCAAAGAGAATCCAAAAG
ATTTCGTGAGTTTCCAATACGCGGCCACTGCTGACGAAGTTTTGCAAGCC
GTCATCGGATTGGTGGCTTTCTTACTCAACATCAAATTTCTTCGACTTTT
CCAATTCGCCAAAACCTTCTTCAGTATAGGCCTCATCATGAAGACGTTCG
TTCATCCGTTGTTGATGTTCATGGTCCCCNATTCTTCAGTATTGGCCTCA
TCATGAAGACGTTCGTTCATCCTTTGTTGATGTTCATGGTCCCCTTTCTC
GGTTTCTTCCTGCTTTTCGCTTACTGCGCCCACCTCGGGTTGGGGACACA
GGTATACGAATACAATTCGCTCGGGCGCACGTGTGTTTCGCAATTTCTCC
ATTTGCTCGGTGCCGTAGATTTCGAACTAATGCAAGAAGCGCGGCCGTTG
TTCGGGCCGCTGTATTATGTGGCCTTCTCAATGTTCATGTTGAACGTTGT
TTTTAACGTTTGTATCGCCATCATTTGTGAAGCGATCGACGATGATTACG
AGGAAGAGTACGTCAAGCAAGCAGGTGATATCCAACTCGTCGAATACATG
ATCACGCGTTTAAAACGTTTCGTCGGGCGGTACGAAGAGGGCGCGTGGCG
TGACCAGTTGGATGAAGAAGTGTCTCGGGATAAATACGAAACCTGTGACG
CTTTGATGACGAGATTGGAGAAAAGTGTTGACGAGATACACAAATATGTC
TTCCAACAAACGGCGAGTTGTAATGAGAAAGAGAAAGGAGAACACGCGAA
TTTGGGCGTTGCTATGGAGAACAGTGTAACTGTGGAAAACGTTGAGGAGG
AGCATAGTGAGACAGGAAGCCGCTCAGTGGAGGAGTGTGATGAAAGAAGC
GTCAACGAGAGAGACGAAGATATGATGCAGATTGAAAGCGAGAAAGAAGA
GGAAAATAAACAAACGAACGAAAATGAAGACCAAACTGTTGACGAAAACA
CTACTTCTCTTGATTCGAACtgaaattttattcattcattttgaATATTG
TGATAGTATTAAAACTTTTTAGAGTGACCTGTGCTATATCAGTCAAggac
tattgcaaattaggataaATGCGAGTATTTAGCCTAAATAGGATAAATTA
TCCTAGCCTATTTAGGATAAAACGAAGAAAAActtaatttattgaataaa
cttTGAGATCTGCGTCGAGATTTGCATGACGTCGCTGTAAAATAAGAGTG
CCT Coding sequence (CDS) from alignment at sc0000130:454671..458223+ >TCONS_00011554 ID=TCONS_00011554|Name=TCONS_00011554|organism=Clytia hemisphaerica|type=CDS|length=1986bp|location=Sequence derived from alignment at sc0000130:454671..458223+ (Clytia hemisphaerica)
ATGGACAACCAACAAAACAACACTGTCAGTCGAAAGCGTCGTGACTTGAC
TTTTGTGATGGCACCGAAACGCCGAGCACGTCGCTCAACATCGAATGGGG
TTTACAAGAATATGGTAACCGGTGCCGGCAAAAAGAGTTCAAAAGCTCGA
AGATTAGCGAAGAAAAGGGCGCCCGGTGGTAAAAGGGTGTATTACGTCAG
CCCTAAGGCTCTCTTGCCTGGCGGTGCTGTTGTCTCCTGTTTTGATCGCT
GGGAGCACCGAACGCAATCTGAACTCAGGGGATTTCCTTTTGTGGGAAGA
ATGCTGACGTATGCAGGAAGTGGTTACCATGCCAATCTTGGATACAACGA
AGAAACAGCGTGGACAGTGATTGCTGATCTTCATTCACATAATTGGTTCG
ATGAGCAGACACGCGCCATCTTTATCGAGTTCACTGTCTACAACCCGAAC
GTCAATTTATTCGCAACTGCTTTCCTTTTCACAGAAATGACTCCCACAGg
tGGATCCTTGCCATGggctgatttcaaaattttcaacggATATCGCTACT
CTGTCAATGTGAACGCAATGAGTCGAGTTGCCGAGCTTATTTTTGTCGGC
TTCGTCATTTATTACACTGTGAAAGAGATCCGTAAACTCCTGAAACAAAA
ATGGCAATATTTCCATAGTTTCTTCAACATCATTGAAATTCTACTGATAC
CCTTATATTGTGCCATGTTTTGCTTACTTTTGGTTCGCTGGTTGACTACA
GCCAGAAACATCAAAATGTTCAAAGAGAATCCAAAAGATTTCGTGAGTTT
CCAATACGCGGCCACTGCTGACGAAGTTTTGCAAGCCGTCATCGGATTGG
TGGCTTTCTTACTCAACATCAAATTTCTTCGACTTTTCCAATTCGCCAAA
ACCTTCTTCAGTATAGGCCTCATCATGAAGACGTTCGTTCATCCGTTGTT
GATGTTCATGGTCCCCNATTCTTCAGTATTGGCCTCATCATGAATGGACA
ACCAACAAAACAACACTGTCAGTCGAAAGCGTCGTGACTTGACTTTTGTG
ATGGCACCGAAACGCCGAGCACGTCGCTCAACATCGAATGGGGTTTACAA
GAATATGGTAACCGGTGCCGGCAAAAAGAGTTCAAAAGCTCGAAGATTAG
CGAAGAAAAGGGCGCCCGGTGGTAAAAGGGTGTATTACGTCAGCCCTAAG
GCTCTCTTGCCTGGCGGTGCTGTTGTCTCCTGTTTTGATCGCTGGGAGCA
CCGAACGCAATCTGAACTCAGGGGATTTCCTTTTGTGGGAAGAATGCTGA
CGTATGCAGGAAGTGGTTACCATGCCAATCTTGGATACAACGAAGAAACA
GCGTGGACAGTGATTGCTGATCTTCATTCACATAATTGGTTCGATGAGCA
GACACGCGCCATCTTTATCGAGTTCACTGTCTACAACCCGAACGTCAATT
TATTCGCAACTGCTTTCCTTTTCACAGAAATGACTCCCACAGgtGGATCC
TTGCCATGggctgatttcaaaattttcaacggATATCGCTACTCTGTCAA
TGTGAACGCAATGAGTCGAGTTGCCGAGCTTATTTTTGTCGGCTTCGTCA
TTTATTACACTGTGAAAGAGATCCGTAAACTCCTGAAACAAAAATGGCAA
TATTTCCATAGTTTCTTCAACATCATTGAAATTCTACTGATACCCTTATA
TTGTGCCATGTTTTGCTTACTTTTGGTTCGCTGGTTGACTACAGCCAGAA
ACATCAAAATGTTCAAAGAGAATCCAAAAGATTTCGTGAGTTTCCAATAC
GCGGCCACTGCTGACGAAGTTTTGCAAGCCGTCATCGGATTGGTGGCTTT
CTTACTCAACATCAAATTTCTTCGACTTTTCCAATTCGCCAAAACCTTCT
TCAGTATAGGCCTCATCATGAAGACGTTCGTTCATCCGTTGTTGATGTTC
ATGGTCCCCNATTCTTCAGTATTGGCCTCATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00011554-exon-sc0000130-1491911889:454671..454765 | TCONS_00011554-exon-sc0000130-1491911889:454671..454765 | Clytia hemisphaerica | exon |
| TCONS_00011554-exon-sc0000130-1510915933:454671..454765 | TCONS_00011554-exon-sc0000130-1510915933:454671..454765 | Clytia hemisphaerica | exon |
| TCONS_00011554-exon-sc0000130-1575043694:454671..454765 | TCONS_00011554-exon-sc0000130-1575043694:454671..454765 | Clytia hemisphaerica | exon |
| TCONS_00011554-exon-sc0000130-1491911889:455960..456565 | TCONS_00011554-exon-sc0000130-1491911889:455960..456565 | Clytia hemisphaerica | exon |
| TCONS_00011554-exon-sc0000130-1510915933:455960..456565 | TCONS_00011554-exon-sc0000130-1510915933:455960..456565 | Clytia hemisphaerica | exon |
| TCONS_00011554-exon-sc0000130-1575043694:455960..456565 | TCONS_00011554-exon-sc0000130-1575043694:455960..456565 | Clytia hemisphaerica | exon |
| TCONS_00011554-exon-sc0000130-1491911889:456733..458223 | TCONS_00011554-exon-sc0000130-1491911889:456733..458223 | Clytia hemisphaerica | exon |
| TCONS_00011554-exon-sc0000130-1510915933:456733..458223 | TCONS_00011554-exon-sc0000130-1510915933:456733..458223 | Clytia hemisphaerica | exon |
| TCONS_00011554-exon-sc0000130-1575043694:456733..458223 | TCONS_00011554-exon-sc0000130-1575043694:456733..458223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:454671..458223 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013122 | PKD1_2_channel |
Blast
BLAST of TCONS_00011554 vs. Swiss-Prot (Human)
Match: PK2L1 (Polycystic kidney disease 2-like 1 protein OS=Homo sapiens GN=PKD2L1 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 5.067e-29 Identity = 68/238 (28.57%), Postives = 111/238 (46.64%), Query Frame = 2
Query: 452 WEHRTQSELRGFPFVGRMLTYAGSGYHANLGYNEETAWTVIADLHSHNWFDEQTRAIFIEFTVYNPNVNLFATAFLFTEMTPTGGSLPWADFKIFNGYRYSVNVNAMSRVAELIFVGFVIYYTVKEIRKLLKQKWQYFHSFFNIIEILLIPLYCAMFCLLLVRWLTTARNIKMFKENPKDFVSFQYAATADEVLQAVIGLVAFLLNIKFLRLFQFAKTFFSIGLIMKTFVHPLLMFMV 1165
W + +Q EL GF GR+ +Y+G GY+ +L + + + + L W D TR +FI+F+VYN N+NLF L E TGG++P + RY N + E+IF F+ YY V+EI +L + +Y S +NI+++++I L + R L R + + P + F++ A + + F IK + F KT + + +L F V
Sbjct: 245 WTYHSQDELGGFSHWGRLTSYSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVEFPATGGAIPSWQIRTVKLIRYVSNWDFFIVGCEVIFCVFIFYYVVEEILELHIHRLRYLSSIWNILDLVVILLSIVAVGFHIFRTLEVNRLMGKLLQQPNTYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAV 482 HSP 2 Score: 34.6538 bits (78), Expect = 5.067e-29 Identity = 21/66 (31.82%), Postives = 34/66 (51.52%), Query Frame = 1
Query: 1213 LLMFMVPFLGFFLLFAYCAHLGLGTQVYEYNSLGRTCVSQFLHLLGAVDFELMQEARPLFGPLYYV 1410
+L F V F F +A +L GTQV +++ + +QF +LG D+ + A + GP Y+V
Sbjct: 477 ILGFAVMFFIVFFAYAQLGYLLFGTQVENFSTFIKCIFTQFRIILGDFDYNAIDNANRILGPAYFV 542
The following BLAST results are available for this feature:
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