TCONS_00011553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011553
Unique NameTCONS_00011553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011553 ID=TCONS_00011553|Name=TCONS_00011553|organism=Clytia hemisphaerica|type=transcript|length=3231bp
GATCTACCAGGGATGGCTCTCTAACGTCTCCAAACAACTTGCGTTGAAAA
CCGGAGGAGATATGTCGGATAGTGAAAATATGGAGCAAaccatttatttt
gaaatcataGACGGTGTAGGAGCAAGAACGATTGTCAACGATACAGTGCA
GGTGAACTTGCCACCGGACATCGACAGCGTGGTGAATGAAGTTTCGGACA
CTTTGACTGGTGAAAATTCTCCTCTCGATGTTCTCTCACAAAGTGGTGAT
TATCTGGAGTTATCGAGGCAAGTTCAAATCTACGGCTCATTGTTCAACGC
ACCACGTGATAAAGACCAAAACAATGATACGCAAAAGGGTGCTAGGGTCC
AGcTGCGGTCATTATTATACGACAAAGTTTCCAGCATCAAAATGAAATCA
ACGAAAGACATCAACCTCATTGCTGGCCCATGTGGTGAAGTCTTACAAAA
CCCGGACGAAATTTCGGACAACACCCGCAAAAAAGTTCAGAGCAAGGTGG
ACGAAATGTTGGGCGTTTTGGAATCCGATGAACAAGCGCCAAGAAGTGTG
GTTTTGGGTGCGCTACCAGGTGTTCTAAGCATGACCAATAAAGTGGCGGA
GAGCGCGGCCAATTTGGTGTCCGTCGAACGTGAAGTGGATGGAAAAGTTG
ATGAAGTggtcaaaaaacaaaatttggatAACTCACGACGTCAAGTAAAG
AACGCCCGCCAACAAATGAACAAAACTTCAGAAATCCTCAAACACTACAG
CACACCCGGCGCTGGTACCATCGTCATAGAAACCAAAGATCAAGCATTgg
gattggccaaaatattatcCAATGAGAAAGAAGCTAGCTCAATGGCGGGT
GGAGTTGGCCTTACTTTCAACCCGGGTTTATATCGGAGTGAACAAAGCGA
AGATGATAATGATTTTGTAACTGTTAAGGTTTTGAAATTCGCCAACCTTT
ATTCATTCGATCAATCATCGCTTCGTGTCAACTCTGCCGTGACCGGTATC
AACTTTGAAAATTCACAAACAAACGGTCCAATGGAAGTAAAGGATGCTTC
AGAACCATTAAAAATCATCATCGAAAACCGGGAACCAAAGCAATCATCCT
TTGCAAACAATTCATCAGAAAATTCTAACTCAACTGGTGATGGACTAACG
GCGAACGTTTTCCGAATGGAAGTCGGCGACAACGGCGAGCAATGGTCCTT
CCACGCCGTTGATATTCACAACGAATCATTCCGCGCCGTTATCAACCCAC
AAAACACAAGTCTACGATTGACTGTTTATATGCGGGAAAACAACCGGCCA
TCCCCGGACAAGTATCTCTTCCGCTGGATCGTACCGGACAGTTCATCATG
TGATTGGTTGAACCGTACTGGTTTCGTGAACCGAACGGTTGATGTCCTCC
GCGACCAACCTGAAGATTACTCGTGTAGACTGCATCCGTTTTCTGTATTC
ATAAGTGACGAACTGGAGCTAGATGGAAAGTTCATTTTAGGCGTTCATTA
CCTACCATCTATGCAACAAGAAGAAAAACAGCAAAACACGTCGCCTGCTA
AGAAACGTCGGCGGCGTCGTAACACGCCTTCCAAAGATTCCGATGACTCC
ATAATAGACCTTGATCTTGTGGATGATGAATTTTGCGTCACCATAAAACC
GCCCCCTCCTACACCAGCGCCCACCCTTCCACCTGGTGAATTCGTGACGT
CAATCCCAGTCATCACCAACGACTCGGTTACGTACAATTTGACCATCACC
AAAGCCAAATGTTTGTTTTGGGATGAGATGAATGAAACATGGTCGTCAAA
TGGCTGCTTTGTTGATGCAGAAACCACTCCAGAACGAACAGTGTGTTTGT
GTACACATCTCACGGATTTCGGTGGTGACGTCATGGTAGCGCCCAATCCC
ATCGACATGAACGCTGTTTTTGCGGGCTTGAATAATTTAGGAGATAATTT
GGGTGTTTTGATGGTCATCATCTCACTTTTTCTTATCTACATCATTTTGG
GAGTTTGGGTTAGCAAGAAAGATCGCAAAGATGAAATTGAGAGACAAATG
GTGCATGTTGATTGCACCAACGGGCGACCCATCAAACAAACATTGATCAT
TACCGTAATTACGGGCGCTGGAAATGGATCTGGAACTACCGCCAGAGTGT
ATGGTTTGCTTAGAGGTAGCAAAGGTGAAATGGTGATCCCGTTAAACACG
TCAGAGAACACGCTTTTCAAAACACGATCCACGGTCATTTTGAAAATCAC
CTTATCACGGGAGATCGGTGAAGTGGATTTCTTTCGAGTGTTTCACGATA
ATGGAGGTCGAAGTCCATCATGGTATTTACGTTCCATCTTGGTAGTGGAC
ACTGAAACGCGTAACGAGTTCCCCTTCGTCTGCGACACTTGGCTCTCAGT
TGAATCGGTGGACGGACAGATTGACCGCACGCTCGTCGTGGCGAccgaaa
aagatttgaaaagttTCCATCTTATTTTCGCATCCAAAGTTTCCAAAGGC
CTCTTGGATGGTCATATCTGGTTCTCTATCTTTCTGCGACCTGCCCAAAG
TTCTTTTACACGTTTCCGCCGCCTCACCGCCTGCCTCGCTCTCATCTTCC
TTACTATGCTCACCAACGCAATGTTCTTTGGGGCGAGTGACGCCCCTGGT
GGGCGGAAAATTGTCTATCTAGGGAATTTCAAAGTCAATCTGACGGGCGT
GATGATCGGTATACAGTCTAGTATTATCATCATCCCGCCTAGTGTGATTA
TCGTCGAGATTTTTCGTCGTTTGAAACCAAAGAAGAAGCAAAAGGTCAAG
GAGATGGAGGTGGTCGAAATTGCCGGTGACGAAAGTTACcttgataaaga
agaaaatgaggATGAGATGAATAATTCGATGGTTTTCctcaaaaatgatc
aaaacacaaagaagaaggagaagaaaaaagagagtaaacCTTTCATGCTA
CCCCATGGTTTTAAATATGTGgcatatttcgttgtttttgcttctgtgag
TAGCTCTGCAACCGTATGTTTCTTTTACTCCATGATGTGGGGGCCGCGTC
GTTCGAACGAATGGCTTGTCTCGATGTTCACTGGTTTCTTTCAATCTGTC
ATTGTTATTCAACCCGTCAAAGCCGTCTTCGTCGCCGTTCTTTTTGCCGC
CATTTTGCGAAAACCCGTCAAACACGACGTCACTCTGCTTGATGATGACG
ATAAGATAGAGGAGGAGAGAAATGAACAGAC
Run BLAST on NCBI

transcript from alignment at sc0000130:443247..452072+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011553 ID=TCONS_00011553|Name=TCONS_00011553|organism=Clytia hemisphaerica|type=transcript|length=8826bp|location=Sequence derived from alignment at sc0000130:443247..452072+ (Clytia hemisphaerica)
GATCTACCAGGGATGGCTCTCTAACGTCTCCAAACAACTTGCGTTGAAAA
CCGGAGGAGATATGTCGGATAGTGAAAATATGGAGCAAaccatttatttt
gaaatcataGACGGTGTAGGAGCAAGAACGATTGTCAACGATACAGTGCA
GGTAtatgcttttttttataagaacgacccttcggatgttcttagctctt
tgagtttcaagccaaatgctcttaaaattgtcacttttttgtatttgtag
gtagttttgttcaaattcttaaaaaaaattttggccatcgCCGAAGCCTT
attgttcttacatagtttgttattataaaaaaaatgtgcatAGCATCGGT
AGTACATAACTTTGTGTTTCCAGGACTCATTCGACACTCGCCAGATAAAG
TAAAACTAAATACTAATCTAAATAATGTAGATATCCAGAAGTTTGTTCAT
ACATTTTTTGTAATATCTTTTAAttttctaacaaaattaattttgatatc
CATTTTGAGAATTTCGTTTCAACAAAGATAGTTGCCATTCAAGATATCAT
AATCGCAAACCATATTTCTAATGTTTTGCATTTCATCATTAACTTCAACA
GGTGAACTTGCCACCGGACATCGACAGCGTGGTGAATGAAGTTTCGGACA
CTTTGACTGGTGAAAATTCTCCTCTCGATGTTCTCTCACAAAGTGGTGAT
TATCTGGAGTTATCGAGGCAAGTTCAAATCTACGGCTCATTGTTCAACGC
ACCACGTGATAAAGACCAAAACAATGATACGCAAAAGGGTGCTAGGGTCC
AGGTAGGTGTTGATTTTATTTAGTTGGCTTATACTAAGCATGGCTAAACA
TAAAATTTCATCCTTCttagctttttatttttttacgaGGTAAtgagctt
ttttttttaagtatcaGATATGGAAACTTTCCTTTTATACCATCAACGAA
GAATCGAACTATTGTTTGTCAAACTATAACTTATTGAGAATAAAAACTTT
ACTTTAGCCAGTGAGATTATAATGGTTTTTCGCTTTCctattttaccttt
tttagcTGCGGTCATTATTATACGACAAAGTTTCCAGCATCAAAATGAAA
TCAACGAAAGACATCAACCTCATTGCTGGCCCATGTGGTGAAGTCTTACA
AAACCCGGACGAAATTTCGGACAACACCCGCAAAAAAGTTCAGAGCAAGG
TGGACGAAATGTTGGGCGTTTTGGAATCCGATGAACAAGCGCCAAGAAGT
GTGGTTTTGGGTGCGCTACCAGGTGTTCTAAGCATGACCAATAAAGTGGC
GGAGAGCGCGGCCAATTTGGTGTCCGTCGAACGTGAAGTGGATGGAAAAG
TTGATGAAGTggtcaaaaaacaaaatttggatAACGTAAGTGACGTGATT
ATACAAAATTTATACTCCACTCAAGTGGGAGCTGTATTTTTTTTACCTGG
GCCAAAGACTCAACAGTGAATTAATGTATTCGAGATGTAGCTAAAGTCAC
CATCTACTTTTCTTggcgacggtaaaaacacctaAATACCATTGTCtttt
taggtgagcaaaggtgATTTAGAgtcgtacatcaactatcgactttgttt
tgcgtcGACTTTACTTACCGTTGGCCTCGATATCCCCCGATACATAAGCC
CGCTAACCAATTTTCTGCCACCCGTTTAGAAATacattatgatatttttg
cagTTGATTATCCATAACTCGAGCACGCGCTAAGATTTGTTTGACTTGAA
TATCTTAAGTTATGTACTAAGGTTTGAaagacattgttaactgaagtgat
cataaaacttgttcgagttatagcgGTTCGACTTAAAGAGACAGCACTGT
AAAATGAATAATCTACCCTTTCATATATAtggttttttctttataagcat
tgcgcttataagcataactaggctcatatatggcaaaaatttaagcatat
gctaaacaTTACCTTGAGCCTTCATACTCAGAGTTTGTTTCTTTTTgact
ggaattttacggattttctaaatttctctaaaattttgcttaggataagc
atccctcaaagcatttttcagctttgtaaatctCTCGATCGAAGCATTTC
CGAGCcagcttttggatttttgtatgcttataaaaaaaaacatgtatatg
gTAGGTCATAATTCCTCATCTGTTTTTCAGTCACGACGTCAAGTAAAGAA
CGCCCGCCAACAAATGAACAAAACTTCAGAAATCCTCAAACACTACAGCA
CACCCGGCGCTGGTACCATCGTCATAGAAACCAAAGATCAAGCATTggga
ttggccaaaatattatcCAATGAGAAAGAAGCTAGCTCAATGGCGGGTGG
AGTTGGCCTTACTTTCAACCCGGGTTTATATCGGAGTGAACAAAGCGAAG
ATGATAATGATTTTGTAACTGTTAAGGTCGGTTCCCTTGAAATCTTGCTC
CATTACtattattttttctcttttacaaGTCTGTTGTTTCATTGCTATGC
CTATGCACGGTTTAATCTTTTCAAACCCCAGTTCAATTCTTCCAAACGGC
catcttttctttttaagttcTACACGAtcattttcaattgttttaaaaTC
GTCATTTATTAAATATCTCTGCCAGGTTTTGAAATTCGCCAACCTTTATT
CATTCGATCAATCATCGCTTCGTGTCAACTCTGCCGTGACCGGTATCAAC
TTTGAAAATTCACAAACAAACGGTCCAATGGAAGTAAAGGATGCTTCAGA
ACCATTAAAAATCATCATCGAAAACCGGGAACCAAAGCAATCATCCTTTG
CAAACAATTCATCAGAAAATTCTAACTCAACTGGTGATGGACTAACGGCG
AACGTTTTCCGAATGGAAGTCGGCGACAACGGCGAGCAATGGTCCTTCCA
CGCCGTTGATATTCACAACGAATCATTCCGCGCCGTTATCAACCCACAAA
ACACAAGTCTACGATTGACTGTTTATATGCGGGAAAACAACCGGCCATCC
CCGGACAAGTATCTCTTCCGCTGGATCGTACCGGACAGTTCATCATGTGA
TTGGTTGAACCGTACTGGTTTCGTGAACCGAACGGTTGATGTCCTCCGCG
ACCAACCTGAAGATTACTCGTGTAGACTGCATCCGTTTTCTGTATTCATA
AGTGACGAACTGGAGCTAGATGGAAAGTTCATTTTAGGTAAATTTCAGCA
AGTAGCATAAAAAATATTTGGGTACCATTAAAAGCTCTTACAAAGTcaaa
tataacaaaaatatcAGATTCAGAGAAATTATTTAATGCAtggctttcaa
tttctcttttttatagGCGTTCATTACCTACCATCTATGCAACAAGAAGA
AAAACAGCAAAACACGTCGCCTGCTAAGAAACGTCGGCGGCGTCGTAACA
CGCCTTCCAAAGATTCCGATGACTCCATAATAGACCTTGATCTTGTGGAT
GATGAATTTTGCGTCACCATAAAACCGCCCCCTCCTACACCAGCGCCCAC
CCTTCCACCTGGTGAATTCGTGACGTCAATCCCAGTCATCACCAACGACT
CGGTTACGTACAATTTGACCATCACCAAAGCCAAATGTTTGTTTTGGGAT
GAGATGAATGAAACATGGTCGTCAAATGGCTGCTTTGTAAGACCGTCTTT
CACTTTCGcacttttttcataattttaaaaagataaaaggtCCAAATAGA
ACgttaaacttttgaaaatgtaatGTCGAACTCAACACCATATTGCAGTT
ATCAGTAAAAGCCTCAAGGCAATACGCGTTGGTAGTGGATAAAATACAGC
AGAGTCCCTCTAAACTCTAAACCaatataactcgaatgtctccttaactc
gaacaagttttcttgtcttttcagttaacaACGCCTTGCAATCCTTactt
ccataactcgaaatttccataactcgaacaaatttgtgttccccatACGT
GTTCGAGTTATCGAGACTTCGCTGTCTCGGTGCGTTGAGGTCAGGGTGAG
AGGAGACGAAAACTCATTACCATTTATCCATTCTTTCCAGGTTGATGCAG
AAACCACTCCAGAACGAACAGTGTGTTTGTGTACACATCTCACGGATTTC
GGTGGTGACGTCATGGTAGCGCCCAATCCCATCGACATGAACGCTGTTTT
TGCGGGCTTGAATAATTTAGGAGATAATTTGGGTGTTTTGATGGTCATCA
TCTCACTTTTTCTTATCTACATCATTTTGGGAGTTTGGGTTAGCAAGAAA
GATCGCAAAGATGAAATTGAGGTTATTACGGTTATTGAGTTTGGACCAAT
AAGTGAAATGCTTTTATTCTGAAAATTCTGATTCTTCCTTTAATCTTTCT
TTTTGTTGTGTCAAATCGCAATTCGAAACTGAAAAGCAATAAACAAACTC
TCGACAAACCTCCAGGctaaatgttttgttttcatattctttaagtttat
atcaacttttttttttctttttttttatatatgattTGAGAAACTACATT
ACACTTACGAACATATACtacttacaaaaacaaacacagaaaaaataacT
TCTCTTTTTCACCAGAGACAAATGGTGCATGTTGATTGCACCAACGGGCG
ACCCATCAAACAAACATTGATCATTACCGTAATTACGGGCGCTGGAAATG
GATCTGGAACTACCGCCAGAGTGTATGGTTTGCTTAGAGGTACCTTGATG
TTAAATTTTCTACTTCACTGTTTTCAATTCTACCCCACAATCTATCTTGA
TCATGTGAAGTCTATTGTATTCAGCCATGAATTTGCTATTCACTCTATCC
Ttggcaaacgatagcccttgacccaataagcatatgatataatatcaggg
gtactcaaagcaaatttttcaaatgagaatgctaagcaaccccacccctg
acccgaaaattggagttgcttataaaaaagtaattaatTATTATTCAAGC
GAAGTATGAAACTTTTGACCAACTGCTTCAGCTGAGGTAATTACAGATTT
TTGACCCGAAAACATATCAAAGAGTATCTCTCAAAACGTTTATATTTCTG
TCACATCACAGGTAGCAAAGGTGAAATGGTGATCCCGTTAAACACGTCAG
AGAACACGCTTTTCAAAACACGATCCACGGTCATTTTGAAAATCACCTTA
TCACGGGAGATCGGTGAAGTGGATTTCTTTCGAGTGTTTCACGATAATGG
AGGTGAATATTCATtcactcattcattcattcattcattcattcattcat
tcatttagtCATTCATCATAGGGTCCTCCAGGgttcaggtacccccaaaa
aatttaggtacccccaatcattttggtacccccaaaatttttagaatttt
gaagtaaacccccaccccggtggggtggaggtcctataaattaacctttg
tccgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtt
cgttcgttcgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctataaaccctcgaatg
tgacggagcccgattttcgaaaaaaaaatttttgggcaaatttgggccaa
aaaacgggttttttggactttatgaaaaattggatcgttaactttttcag
attttttgcatgaaagtagggtaccatcataggtaaaagatggctcaagc
agattttttcaaaaaaaattttttggctcaaaaaacgcatNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNttggcgtgtttttatagaaaaactggccaaattcg
atatttatttataagcacattatcaattacctaggttttagcttttctcg
aggttgcctctttgattctttatgattttttgcacaaagatgcataacta
taaaccctcaaatgtgacggagcctgactttcaaaaaaaaaaaatttggg
gcaaatttgggtcaaaaaacggctaaagaacgggttttttggactttgtg
aaaaattgaatcattaactttttctgattttttgcatgaaagtagggtac
catctaaggtaaaagatggctcaagtagattttttcaaaaaaattttgtt
ggctcaaaaaacgcatgtttatctataagagtcaattgataagcatacat
caatgttcttagccaaattacttaattttttgatgagatagatgtttttt
tgctcccagagtcttgaatatgaaagaatatttcaagagcatgaaatttt
ggtttttaaacgctttttttataagaaacaaacgactaattttaatagat
cgtcactatttgtgttctgaatgattgtttaatggtcacgcttacgtaga
tatcaattatatacgtgttaaatgcataaccaggtaggtccataaaaatc
acttgttaatttttttattgttagaAATACAAAATGGGGAATTTTtgctc
ttttgtcattcctgggAAAATACTTCCATGGCGGCCAGCacttctttttc
aacaaattcaaggGTGTCATTTTTTACTATAATTTTCCAGGGTTTTTTTT
ATATACCACAAACTTTCCAGGGTTTCTAGGGTTTTTAGTTGATCTTTGct
agttttcaaagatttcaaggaATTCTGTCGACAAAAggagaaaggttgaa
ttttcaatttttgtgtaaAGGAGGACCCTTAAATTGgctgataattgata
attttgcAACCACCCATTCTATCACCCAGACCTGCCAATCTCATATAATT
CCAGTGGCACTTAGCGGGTTAAAAGGTAAACCCCCTAAGAATGAGTGTGG
AATATCCCCTTGAGTCTAAGGGGTTCCAAAAGtatgttttcttgttttta
agtCACTGCGATGTTTGTATCCCACGCAATGGGAAAAATTTCGTAATTCT
GAAagttaaaatggctgaaaatggccaaaaaatttggcatttcaagggtt
tcaaggaccCCCAAAACAATATTGacttttcaagggtgtttcaagggttt
caaggaattCAAGGTGATGGCtttatacaaaaacaacagcccccgccccc
actaatgaaaatgcaggtacccccaaacatatcaggtaccccctaaattt
aggaatacttccaggtacctggcttttttttaggtacccccaaatcaCTG
GGGGGGTGGATCCTAtgtcattcattcattcgtttatgcattcattcatt
cattccagCGCCCGTTTGCTGATCTTCATTCTTTACCCAAAACGAGATAA
AGCTGATAAAAATTCGTTTTGCTTGCTTCGCTCTCGAAAAATTTCAAGAC
ACATTTTTTCAGTCAGTGTCAAAACTTGCCTCCCCAGTCAACCCTAATTT
CGGTCGACCTACCACGATACTGCAATATGTTGGGTCTGATCGAAATTAGG
GTTGACTGGACTTATTTGGACTCCAGTAGTTGTATTCAGAAATAGAAAGA
AGTGATCACAACCGCCCTTAATGTCTTTCTTTCATCATTTTTATATTTCA
GGTCGAAGTCCATCATGGTATTTACGTTCCATCTTGGTAGTGGACACTGA
AACGCGTAACGAGTTCCCCTTCGTCTGCGACACTTGGCTCTCAGTTGAAT
CGGTGGACGGACAGATTGACCGCACGCTCGTCGTGGCGAccgaaaaagat
ttgaaaagttTCCATCTTATTTTCGCATCCAAAGTTTCCAAAGGCCTCTT
GGATGGTCATATCTGGTTCTCTATCTTTCTGCGACCTGCCCAAAGTTCTT
TTACACGTTTCCGCCGCCTCACCGCCTGCCTCGCTCTCATCTTCCTTACT
ATGCTCACCAACGCAATGTTCTTTGGGGCGAGTGACGCCCCTGGTGGGCG
GAAAATTGTCTATCTAGGGAATTTCAAAGTCAATCTGACGGGCGTGATGA
TCGGTATACAGTCTAGTATTATCATCATCCCGCCTAGTGTGATTATCGTC
GAGATTTTTCGTCGTTTGAAACCAAAGAAGAAGCAAAAGGTCAAGGAGAT
GGAGGTGGTCGAAATTGCCGGTGACGAAAGTTACcttgataaagaagaaa
atgaggATGAGATGAATAATTCGATGGTTTTCctcaaaaatgatcaaaac
acaaagaagaaggagaagaaaaaagagagtaaacCTTTCATGCTACCCCA
TGGTTTTAAATATGTGgcatatttcgttgtttttgcttctgtgagTAGCT
CTGCAACCGTATGTTTCTTTTACTCCATGATGTGGGGGCCGCGTCGTTCG
AACGAATGGCTTGTCTCGATGTTCACTGGTTTCTTTCAATCTGTCATTGT
TATTCAACCCGTCAAAGCCGTCTTCGTCGCCGTTCTTTTTGCCGCCATTT
TGCGAAAACCCGTCAAACACGACGTCACTCTGCTTGATGATGACGATAAG
ATAGAGGAGGAGAGAAATGAACAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006474XLOC_006474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011553-exon-sc0000130-1491911889:443247..443397TCONS_00011553-exon-sc0000130-1491911889:443247..443397Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:443247..443397TCONS_00011553-exon-sc0000130-1510915933:443247..443397Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:443247..443397TCONS_00011553-exon-sc0000130-1575043694:443247..443397Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:443848..444048TCONS_00011553-exon-sc0000130-1491911889:443848..444048Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:443848..444048TCONS_00011553-exon-sc0000130-1510915933:443848..444048Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:443848..444048TCONS_00011553-exon-sc0000130-1575043694:443848..444048Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:444302..444631TCONS_00011553-exon-sc0000130-1491911889:444302..444631Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:444302..444631TCONS_00011553-exon-sc0000130-1510915933:444302..444631Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:444302..444631TCONS_00011553-exon-sc0000130-1575043694:444302..444631Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:445427..445672TCONS_00011553-exon-sc0000130-1491911889:445427..445672Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:445427..445672TCONS_00011553-exon-sc0000130-1510915933:445427..445672Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:445427..445672TCONS_00011553-exon-sc0000130-1575043694:445427..445672Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:445872..446433TCONS_00011553-exon-sc0000130-1491911889:445872..446433Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:445872..446433TCONS_00011553-exon-sc0000130-1510915933:445872..446433Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:445872..446433TCONS_00011553-exon-sc0000130-1575043694:445872..446433Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:446563..446882TCONS_00011553-exon-sc0000130-1491911889:446563..446882Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:446563..446882TCONS_00011553-exon-sc0000130-1510915933:446563..446882Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:446563..446882TCONS_00011553-exon-sc0000130-1575043694:446563..446882Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:447287..447517TCONS_00011553-exon-sc0000130-1491911889:447287..447517Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:447287..447517TCONS_00011553-exon-sc0000130-1510915933:447287..447517Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:447287..447517TCONS_00011553-exon-sc0000130-1575043694:447287..447517Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:447812..447935TCONS_00011553-exon-sc0000130-1491911889:447812..447935Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:447812..447935TCONS_00011553-exon-sc0000130-1510915933:447812..447935Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:447812..447935TCONS_00011553-exon-sc0000130-1575043694:447812..447935Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:448308..448448TCONS_00011553-exon-sc0000130-1491911889:448308..448448Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:448308..448448TCONS_00011553-exon-sc0000130-1510915933:448308..448448Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:448308..448448TCONS_00011553-exon-sc0000130-1575043694:448308..448448Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1491911889:451148..452072TCONS_00011553-exon-sc0000130-1491911889:451148..452072Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1510915933:451148..452072TCONS_00011553-exon-sc0000130-1510915933:451148..452072Clytia hemisphaericaexon
TCONS_00011553-exon-sc0000130-1575043694:451148..452072TCONS_00011553-exon-sc0000130-1575043694:451148..452072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:443247..452072 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.254536	0.233652	0.240389	0.183165	0.126654	0.175147	0.137118	0.269671	0.0115682	0.34594	0.523337	0.245688	0.314566	0.247579	0.192214	0.299088	0.279725	0.196934	2.55867e-08	0.119743	0.966598	0.771378	0.402481	1.16843	1.4739	2.34867	0.162339	0.154618	0.156363	0.0409514
Blast
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BLAST of TCONS_00011553 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4)

HSP 1 Score: 195.282 bits (495), Expect = 2.536e-50
Identity = 114/328 (34.76%), Postives = 183/328 (55.79%), Query Frame = 2 
Query: 1727 VTYNLTITKAKCLFWDEMNETWSSNGCFVDAETTPERTVCLCTHLTDFGGDVMVAPNPIDMNAVFAXXXXXXXXXXVLMVIISLFLIYIILGVWVSKKDRKDEIERQMVHVDCTNGRPIKQT-LIITVITGAGNGSGTTARVYGLLRGSKGEMVIP-LNTSENTLFKTRSTVILKITLSREIGEVDFFRVFHDNGGRSPSWYLRSILVVDTETRNEFPFVCDTWLSVESVDGQIDRTLVVATEKDLKSFHLIFASKVSKGLLDGHIWFSIFLRPAQSSFTRFRRLTACLALIFLTMLTNAMFFGASDAPGGRKIVYLGNFKVNLTGVM 2704
            +T  +T   + C+FWDE+ ETW  +GC V   T+P +T CLC HLT FG   +V  N I+++          DN  V+  +  L ++Y+++ +W  +KD +D+ + ++  ++  +  P  Q   ++TV TG   G+ T+++V   L G  GE     L   +  +F+  +     ++    +GE+   R++HDN G  PSWY+  +LV D     ++ F+C++WLS+   D  +D+   VATE+D K F  +F  K S G  DGHIW+SIF R A+SSFTR +R++ C +L+  TMLT+ MF+G    P  +K+  LG  +     VM
Sbjct: 1271 LTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLE--DNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKM-DLGKIEFTWQEVM 1595
The following BLAST results are available for this feature:
BLAST of TCONS_00011553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK1L22.536e-5034.76Polycystic kidney disease protein 1-like 2 OS=Homo... [more]
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