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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011468 ID=TCONS_00011468|Name=TCONS_00011468|organism=Clytia hemisphaerica|type=transcript|length=1697bp
ttttgagattgaacgtcattttcagccaatcagaagcGACCACGAACATC
AGAAGCAAAACATCtataaaattttttcttgtctCTTTAAATCAACATGG
AGAAATTTCGAATGAAGACGtttttttgactgaaaattttaaggaaaGGG
AAAACATATTGAAATCATGGTAGAAGATAATATATTGAAAGGCAACATTT
TTTGCCTTGCCAATGTTGATGCGGAAAAGGTTTTAAATTCACTAGAAGAC
GATGAAAATCCATCACCAGAAATTATTGGTCGGAAGAGGAAAAGACTCGA
TGATTTCACACCACAAGAAAAAATGATAAGAAGGAAACTAAAGAATCGAG
TTGCTGCCCAAAATGCTAGAGATCGAAAGAAGGAACGACTTGAACAATTG
GAACATATTGTTGATAGACTGGAGAAAGAGAACAAAGAACTGAAAAAGAG
CAATGATGAATTACGGACAAATATGACCTTCCTCATGTCACAAAACAAAA
CTATGCGATTAAAACTGGGCATGAGTGATGGAGATTTtgaacaaccaaaa
acattaaaTATAACACAATCACCAATTATTACACCAACTGTCGGAGACCA
TGATCATATTGTGattaagaaagaagaagaaactgACACCGAGTACGCAT
CACTTGGGAGAATTTCTCTGCAGCAGAAGCTTCAGGTTCTTCTTGTTTCA
TTAGTCACGATGTGGTTAGCCAATCCCAGACTGGCCAACTGCTTGACATC
CTTGAACGAATCGGAGCAAGAAGTAGTGGTCAAATATCTCTTACAGAAGA
AATTGATTCTTCAAAAGAGCAACGTCTCCAACAAGAAAGTACAGTTGATA
CAACTGTTACTTCAAATGAATCTTATACCGATAATCCAGAATTGTCTACC
GAAGACACCACTGAATTATTTTCCCTCTGCCAAGAAATCCAAGACCTTGT
GGATGGACCCGGCAATACTATAGATGAAGCAGACCTTGATGTTGTATCGC
TTATTTCCGAATTACCAGCTGAAGTTTCAAAGACAGTTCAAAAATCTAAC
CAAACATTCAAACCATCTCATGAGTTATCAGAAATATTTAGTCTTTTGGA
TTCTGACTCTGGCTTTGGATCAGAGGATGAAAGGACAGATTTTTCACCTT
CCAATACAATTGATGATGATTTTCTGGACTTATTTCCTATTCTTTCTTCT
GTCTAAATGACAAATTCATTCCTTTAAAACTTTATATCCATATATTTCGT
TATTGAAATTTGTACATAAGatttatatttttctgttaCACTTATCCACC
AACAACAAGTTGACCttgttgtttttggttttgataaattcacaaacaat
caaaattgcATATAACAAATCAGATCTATTTTTTGAATACTCGATAAGGC
CATGATGTATGCTATGCTTGATTGTTTGGGTGTTTGTACATACTTATTTG
AAAATTCTTCttggtaaaaagaaaattaaaatgtaatttattatgaaaca
ataaaacactctctctaattcattCAAACCCTAATATAACCTTTATCTAG
ACAAGTAAAAACCTATGGTCCACTTTATCTCATTAAGCGGATAATTGACA
AGATCATATCCAATTTTTTAATAATATCTTATAAGAGGAACTTGGTCCTT
GTTCCTTGGAAATGTTGAACATATCAGTAAGATCTTTAAATAAGGAA Run BLAST on NCBI protein sequence of TCONS_00011468-protein >TCONS_00011468-protein ID=TCONS_00011468-protein|Name=TCONS_00011468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MVEDNILKGNIFCLANVDAEKVLNSLEDDENPSPEIIGRKRKRLDDFTPQ
EKMIRRKLKNRVAAQNARDRKKERLEQLEHIVDRLEKENKELKKSNDELR
TNMTFLMSQNKTMRLKLGMSDGDFEQPKTLNITQSPIITPTVGDHDHIVI
KKEEETDTEYASLGRISLQQKLQVLLVSLVTMWLANPRLANCLTSLNESE
QEVVVKYLLQKKLILQKSNVSNKKVQLIQLLLQMNLIPIIQNCLPKTPLN
YFPSAKKSKTLWMDPAIL Run BLAST on NCBI transcript from alignment at sc0000128:82074..85664- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011468 ID=TCONS_00011468|Name=TCONS_00011468|organism=Clytia hemisphaerica|type=transcript|length=3591bp|location=Sequence derived from alignment at sc0000128:82074..85664- (Clytia hemisphaerica)
TTTTGAGATTGAACGTCATTTTCAGCCAATCAGAAGCGACCACGAACATC
AGAAGCAAAACATCTATAAAATTTTTTCTTGTCTCTTTAAATCAACATGG
AGAAATTTCGAATGAAGACGTTTTTTTGACTGAAAATTTTAAGGAAAGGG
AAAACATATTGAAATCATGGTAGAAGATAATATATTGAAAGGCAACATTT
TTTGCCTTGCCAATGTTGATGCGGAAAAGGTTTTAAATTCACTAGAAGAC
GATGAAAATCCATCACCAGAAATTATTGGTCGGAAGAGGAAAAGACTCGA
TGATTTCACACCACAAGAAAAAATGATAAGAAGGTAAGACTTTTGCCATC
AATTTCACCTTTTTTATCCAGTGTTTTCAGATAAGGATCATCCACTCACT
CACCAATTGAGTCAGTGCTTCAAATAATACCGTGAAAAAGGGTAACTTGC
ATCAGTGGAGGCTAACATGCATAGCCCTCAAATGAATGACCTGGCTGGTC
ATTAAAATACAACTACGCAGCTCTGCTCGCAGCTCTACTCTACCATTTTT
GTTTTGATTTATTTTTGTATTTTAATGACCAGCTGGGTCTTTCATTTGAG
GGCTATGCATGTTAGCCTCCAATGATGCAAGTTAGCCTTTTTCACGGTAC
ATCACTTCAAGTCCCAACTTTCAAAGTTTATAAGTAAAAATTTCAATTTA
TACATGATACTTATGGTAAGATTTCCCAAAGAAATTTCTAAAAAATCCAG
ACTATTTTTTAAAGGCAAAGTTAATTAGCTAGGTCCTTTAGGAGTTGGCA
TTACAATTTTTGTTTGGATGTAAACGGGGGTAGGTAGGGTAGGTTGGAAT
AAATAGGGGGCTGGAAAAATTGAAATTGTACCTTTAAATACCTTTAAATA
CCTTCAAAATAAGGTAAATATAGACTAAAGCCTGGCTATTTAGAGGAAAA
TAAGGGGCTCCTCATTTGACGACTGACAACATTTTAACAAATTTATAAAC
AGGGGAGTCCTAATAAGGTCAGGGAAGGTTGGAAGAGAATTTTAAAACTA
ACAAGCGAGGGGGGTCATTTTTTAGACACAAGGGGTCACTTTTTAAACAC
AGGGGAGTACTGAACTTTTTCATTGTATTTCAGGAAACTAAAGAATCGAG
TTGCTGCCCAAAATGCTAGAGATCGAAAGAAGGAACGACTTGAACAATTG
GAACATATTGTTGATAGACTGGAGAAAGAGGTAGACATAACTAGCTGGGT
TATCTTTGATAAATTGATTCAATTGGAATTTTAAGTTGAGGGCTAGTTAT
AAATACAACTTATTTAGGTATCGTTCTTGATCTCTTCTTTGTAAATCTTA
TTATTAGGCTGGAATTGTTGGTTTGCCGTCACCTGACCAACCCTACCTCG
AAACCTGCCAACCCAAAAAAATTTATTGCCATTTTAAAGAAGATTTTTTT
TCCTTCAAAAACTTCAAACAATAAAAAATCAAAACTCGTATCTTGTTTGT
CTCAAGCACAAGAATCGTAAATTCCCTGCTAGCACTTCTGTTTTTTATTT
AAAATTATATAAATGTAAACAAACTGTTAACCCTTCCATGGACAAAAATT
TCGGTAACGGCAAACCAACAATTTTAAGCCCAGCCTTAGCCTTGAATTAA
CCTATTTACCAGGTCTTTTGCCTAATTGGTTCTTTAACCTAAACCCCAAA
TTATGGAGAGTAACTAAATATGTTTTGCAAATTATTGGAAGGTTGTATTT
ATTACTAGAATTGCTATTGGCGTTTGCTTTGAAAATGTTCATTAAAGGGA
ACGACGCATGGTATATTTATGAAATGCTGATCTAGCATTGGCACAAACAT
CCATACGGAGGAGTATTTAGGAGTGCTGGATCATAACAAAAACCAAAAGT
GACTTTATTCCAAAAAATATATTCAAAAAAGTGAATATAATTTACTATAA
TGTTCAACAACAACAGAAAAAGACTTACATAAAACTGAAAGAAAAAAAGA
ATGTCTTTTTCTTTTGAATGAAATCGAGTGTTTCTATTTTTAAATGAAGA
CATTCTATTGTGAATTTAGTGAAAACTTCTTTGCAATCTTTTTGTTTACA
TTTTGTCTTCATTCACTTTCGTTTACTGTTGAAAACATAACAAAGTTTTA
GCTATACTCTTAAACCGCGTATAACTGTCTGTTAAGCCAATCAGCTTCCG
GGCTGACATCAGCATGTATTTCAGAGTATACCATGGAAGTGCCACCAAAT
CCGACCCCTACTATAAGTATAGCGCTATTGCCTTTAAGGTAAAAACTTAA
CAACTTATTTTTTTTCAATCACAGAACAAAGAACTGAAAAAGAGCAATGA
TGAATTACGGACAAATATGACCTTCCTCATGTCACAAAACAAAACTATGC
GATTAAAACTGGGCATGAGTGATGGAGATTTTGAACAACCAAAAACATTA
AATATAACACAATCACCAATTATTACACCAACTGTCGGAGACCATGATCA
TATTGTGATTAAGAAAGAAGAAGAAACTGACACCGAGTACGCATCACTTG
GGAGAATTTCTCTGCAGCAGAAGCTTCAGGTTCTTCTTGTTTCATTAGTC
ACGATGTGGTTAGCCAATCCCAGACTGGCCAACTGCTTGACATCCTTGAA
CGAATCGGAGCAAGAAGTAGTGGTCAAATATCTCTTACAGAAGAAATTGA
TTCTTCAAAAGAGCAACGTCTCCAACAAGAAAGTACAGTTGATACAACTG
TTACTTCAAATGAATCTTATACCGATAATCCAGAATTGTCTACCGAAGAC
ACCACTGAATTATTTTCCCTCTGCCAAGAAATCCAAGACCTTGTGGATGG
ACCCGGCAATACTATAGATGAAGCAGACCTTGATGTTGTATCGCTTATTT
CCGAATTACCAGCTGAAGTTTCAAAGACAGTTCAAAAATCTAACCAAACA
TTCAAACCATCTCATGAGTTATCAGAAATATTTAGTCTTTTGGATTCTGA
CTCTGGCTTTGGATCAGAGGATGAAAGGACAGATTTTTCACCTTCCAATA
CAATTGATGATGATTTTCTGGACTTATTTCCTATTCTTTCTTCTGTCTAA
ATGACAAATTCATTCCTTTAAAACTTTATATCCATATATTTCGTTATTGA
AATTTGTACATAAGATTTATATTTTTCTGTTACACTTATCCACCAACAAC
AAGTTGACCTTGTTGTTTTTGGTTTTGATAAATTCACAAACAATCAAAAT
TGCATATAACAAATCAGATCTATTTTTTGAATACTCGATAAGGCCATGAT
GTATGCTATGCTTGATTGTTTGGGTGTTTGTACATACTTATTTGAAAATT
CTTCTTGGTAAAAAGAAAATTAAAATGTAATTTATTATGAAACAATAAAA
CACTCTCTCTAATTCATTCAAACCCTAATATAACCTTTATCTAGACAAGT
AAAAACCTATGGTCCACTTTATCTCATTAAGCGGATAATTGACAAGATCA
TATCCAATTTTTTAATAATATCTTATAAGAGGAACTTGGTCCTTGTTCCT
TGGAAATGTTGAACATATCAGTAAGATCTTTAAATAAGGAA Coding sequence (CDS) from alignment at sc0000128:82074..85664- >TCONS_00011468 ID=TCONS_00011468|Name=TCONS_00011468|organism=Clytia hemisphaerica|type=CDS|length=2421bp|location=Sequence derived from alignment at sc0000128:82074..85664- (Clytia hemisphaerica)
AACAAAGAACTGAAAAAGAGCAATGATGAATTACGGACAAATATGACCTT
CCTCATGTCACAAAACAAAACTATGCGATTAAAACTGGGCATGAGTGATG
GAGATTTTGAACAACCAAAAACATTAAATATAACACAATCACCAATTATT
ACACCAACTGTCGGAGACCATGATCATATTGTGATTAAGAAAGAAGAAGA
AACTGACACCGAGTACGCATCACTTGGGAGAATTTCTCTGCAGCAGAAGC
TTCAGGTTCTTCTTGTTTCATTAGTCACGATGTGGTTAGCCAATCCCAGA
CTGGCCAACTGCTTGACATCCTTGAACGAATCGGAGCAAGAAGTAGTGGT
CAAATATCTCTTACAGAAGAAATTGATTCTTCAAAAGAGCAACGTCTCCA
ACAAGAAAGTACAGTTGATACAACTGTTACTTCAAATGAATCTTATACCG
ATAATCCAGAATTGTCTACCGAAGACACCACTGAATTATTTTCCCTCTGC
CAAGAAATCCAAGACCTTGTGGATGGACCCGGCAATACTATAGGAAACTA
AAGAATCGAGTTGCTGCCCAAAATGCTAGAGATCGAAAGAAGGAACGACT
TGAACAATTGGAACATATTGTTGATAGACTGGAGAAAGAGATGGTAGAAG
ATAATATATTGAAAGGCAACATTTTTTGCCTTGCCAATGTTGATGCGGAA
AAGGTTTTAAATTCACTAGAAGACGATGAAAATCCATCACCAGAAATTAT
TGGTCGGAAGAGGAAAAGACTCGATGATTTCACACCACAAGAAAAAATGA
TAAGAAGAACAAAGAACTGAAAAAGAGCAATGATGAATTACGGACAAATA
TGACCTTCCTCATGTCACAAAACAAAACTATGCGATTAAAACTGGGCATG
AGTGATGGAGATTTTGAACAACCAAAAACATTAAATATAACACAATCACC
AATTATTACACCAACTGTCGGAGACCATGATCATATTGTGATTAAGAAAG
AAGAAGAAACTGACACCGAGTACGCATCACTTGGGAGAATTTCTCTGCAG
CAGAAGCTTCAGGTTCTTCTTGTTTCATTAGTCACGATGTGGTTAGCCAA
TCCCAGACTGGCCAACTGCTTGACATCCTTGAACGAATCGGAGCAAGAAG
TAGTGGTCAAATATCTCTTACAGAAGAAATTGATTCTTCAAAAGAGCAAC
GTCTCCAACAAGAAAGTACAGTTGATACAACTGTTACTTCAAATGAATCT
TATACCGATAATCCAGAATTGTCTACCGAAGACACCACTGAATTATTTTC
CCTCTGCCAAGAAATCCAAGACCTTGTGGATGGACCCGGCAATACTATAG
GAAACTAAAGAATCGAGTTGCTGCCCAAAATGCTAGAGATCGAAAGAAGG
AACGACTTGAACAATTGGAACATATTGTTGATAGACTGGAGAAAGAGATG
GTAGAAGATAATATATTGAAAGGCAACATTTTTTGCCTTGCCAATGTTGA
TGCGGAAAAGGTTTTAAATTCACTAGAAGACGATGAAAATCCATCACCAG
AAATTATTGGTCGGAAGAGGAAAAGACTCGATGATTTCACACCACAAGAA
AAAATGATAAGAAGAACAAAGAACTGAAAAAGAGCAATGATGAATTACGG
ACAAATATGACCTTCCTCATGTCACAAAACAAAACTATGCGATTAAAACT
GGGCATGAGTGATGGAGATTTTGAACAACCAAAAACATTAAATATAACAC
AATCACCAATTATTACACCAACTGTCGGAGACCATGATCATATTGTGATT
AAGAAAGAAGAAGAAACTGACACCGAGTACGCATCACTTGGGAGAATTTC
TCTGCAGCAGAAGCTTCAGGTTCTTCTTGTTTCATTAGTCACGATGTGGT
TAGCCAATCCCAGACTGGCCAACTGCTTGACATCCTTGAACGAATCGGAG
CAAGAAGTAGTGGTCAAATATCTCTTACAGAAGAAATTGATTCTTCAAAA
GAGCAACGTCTCCAACAAGAAAGTACAGTTGATACAACTGTTACTTCAAA
TGAATCTTATACCGATAATCCAGAATTGTCTACCGAAGACACCACTGAAT
TATTTTCCCTCTGCCAAGAAATCCAAGACCTTGTGGATGGACCCGGCAAT
ACTATAGGAAACTAAAGAATCGAGTTGCTGCCCAAAATGCTAGAGATCGA
AAGAAGGAACGACTTGAACAATTGGAACATATTGTTGATAGACTGGAGAA
AGAGATGGTAGAAGATAATATATTGAAAGGCAACATTTTTTGCCTTGCCA
ATGTTGATGCGGAAAAGGTTTTAAATTCACTAGAAGACGATGAAAATCCA
TCACCAGAAATTATTGGTCGGAAGAGGAAAAGACTCGATGATTTCACACC
ACAAGAAAAAATGATAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011468-exon-sc0000128-1575043694:85332..85664 | TCONS_00011468-exon-sc0000128-1575043694:85332..85664 | Clytia hemisphaerica | exon |
| TCONS_00011468-exon-sc0000128-1575043694:84435..84531 | TCONS_00011468-exon-sc0000128-1575043694:84435..84531 | Clytia hemisphaerica | exon |
| TCONS_00011468-exon-sc0000128-1575043694:82074..83340 | TCONS_00011468-exon-sc0000128-1575043694:82074..83340 | Clytia hemisphaerica | exon |
| TCONS_00011468-exon-sc0000128-1510915933:85332..85664 | TCONS_00011468-exon-sc0000128-1510915933:85332..85664 | Clytia hemisphaerica | exon |
| TCONS_00011468-exon-sc0000128-1510915933:84435..84531 | TCONS_00011468-exon-sc0000128-1510915933:84435..84531 | Clytia hemisphaerica | exon |
| TCONS_00011468-exon-sc0000128-1510915933:82074..83340 | TCONS_00011468-exon-sc0000128-1510915933:82074..83340 | Clytia hemisphaerica | exon |
| TCONS_00011468-exon-sc0000128-1491911889:85332..85664 | TCONS_00011468-exon-sc0000128-1491911889:85332..85664 | Clytia hemisphaerica | exon |
| TCONS_00011468-exon-sc0000128-1491911889:84435..84531 | TCONS_00011468-exon-sc0000128-1491911889:84435..84531 | Clytia hemisphaerica | exon |
| TCONS_00011468-exon-sc0000128-1491911889:82074..83340 | TCONS_00011468-exon-sc0000128-1491911889:82074..83340 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000128 | supercontig | sc0000128:82074..85664 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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