TCONS_00011458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011458
Unique NameTCONS_00011458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011458 ID=TCONS_00011458|Name=TCONS_00011458|organism=Clytia hemisphaerica|type=transcript|length=753bp
GTTCGGAATGTAGCCGCTGAAGCCATGATTGAGTGTTTTAAGTCGGCGag
gaaaaaatataacagctGGCTTGACATATGGAACAACTTGCCAATATTCC
GTAAAGAAGTCCTTATCGTACTCTCCATTGTGATTGGTACTGTCAATTTT
GGTCTTTCCATCAATGACTTTGTACAATTTGGTGAATTACATCGACCATG
TCATTCTACGTACAGTATTACCACAGAGCTTTTGGCTTCGATTACAATTG
GATTTTATTTTGGCTTGACTGGATTCGTATATAGCTGTATTCGGCAAAGT
AAATGGAAGTTTGTCGCTATTTTTGCTATCGCTTGGAATATGTTTGTGTT
GATTTTCAGAACCATTTCTGAATTCGTATACGTTGAATTTCGACCAGATT
GAGAAGGTTATCTCaagatttgaaacttttttgaaatggtCCGGAATTTT
ATCGTTAAAATCTGTATACAGAGTTGATTCATTGGCGCTTGTAAGACCAA
TTTGACGCCATGACAATATTTTGGAATCAGCCAAAGATCATCAATGCTGC
TATTGGTTACATGAAGGTGGGCTCCCTGTCACCTAAACACAATAACAGAC
AATATAAAAGCACGCCCTGGGAAGGGATGATATAGAATGACAGAAAGAAG
ATCGGGATTTCGAAAGATTATTTGgtgttttgatatgtttttaaGTTACT
GTTGTAGTGTAGTCTACTTTATGTATTCATGAATTAAAATCCGAAAATAC
TTT
Run BLAST on NCBI

protein sequence of TCONS_00011458-protein

>TCONS_00011458-protein ID=TCONS_00011458-protein|Name=TCONS_00011458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
VRNVAAEAMIECFKSARKKYNSWLDIWNNLPIFRKEVLIVLSIVIGTVNF
GLSINDFVQFGELHRPCHSTYSITTELLASITIGFYFGLTGFVYSCIRQS
KWKFVAIFAIAWNMFVLIFRTISEFVYVEFRPD
Run BLAST on NCBI

transcript from alignment at sc0000128:312427..315831+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011458 ID=TCONS_00011458|Name=TCONS_00011458|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at sc0000128:312427..315831+ (Clytia hemisphaerica)
GTTCGGAATGTAGCCGCTGAAGCCATGATTGAGTGTTTTAAGTCGGTAAG
TTGTTATTTTTACcttgaatattatcaaaaatattgTTCCAGAAATCATT
TGCAGCATTTTGGTATCAGGCTTGTTTGCTTTCTCGAAAAAATCACGTTT
TTATAgaccaaaattttatgttttttagcTCTAGTTGTAAAGCTTTGAAA
ATTCATTTCGTCAATTTGCTTGTCTCTTATATTTTTCACTTAGGGAGTTT
TTACTACTTTTAATCATCATATTCACTCTCAATATATAACAATTTCTATC
CCTCTCTTCTCATAGGCGaggaaaaaatataacagctGGCTTGACATATG
GAACAACTTGCCAATATTCCGTAAAGAAGTCCTTATCGTACTCTCCATTG
TGATTGGTACTGTCAATTTTGGTCTTTCCATCAATGACTTTGTACAATTT
GGTGAATTACATCGACCATGTCATTCTACGTACAGTATTACCACAGAGCT
TTTGGtaagtttattttttaatcggGTGTTGTAAGACTGTAGGTTTATTA
CACGGCCTTTTGTACAAACAATAGCCGGTTAATGACTACTGAATTTAAAG
ATAATTGACTGAATGGTCAGAACGCTTTAAGGCTTCTGAGTTTACCAGGC
CAGCCTGGTGCAAATGAATGACCTTCCACTCCCAGCGGTAGATATTACTT
CAAATTCGGAATCAATTACGTGGGCTTCGCAAGTTTTGCGagattttagt
atttttatttCCGTTTTTGGAGCTTCAAATATCTGGTGCTTCGCACTTAG
ATGGATATGATAATATTCTGATTCGCAAACCTGTATGCATACACTTCCTG
TACAAGAAAACTTATTGTTAGGGGATTAGCAGTACTAAGACttagttcat
ctaatgttttcagctcacccaaatagagactaatacgcatgcgtaattta
tcgttcttttaAACAACATGCAGTTGATTTcagtgataaacaaagaggaa
tgaatctgtaggggtggtacagtcactttcggtcggggttgcagacagcg
aaatatgtcgttctttgataggGTTAGGGTCGTTCTTTTTGAcgtgcttt
ttaatagttatgtctggaaacgttagatgaacagtctcctAAAGTACTAG
TTTTGTTTGCTTTGTGTTCTCGCGTCTAACGAATTGCGTGTTTCTCTTCT
AAATCGAGTTTGCAGTTTTAGAAGTTCCCTGATAAGCATTATGGGTAGGG
TTATAACGCAATACTGGAAAATTTATCGTTTTGAAATCTGATCTAATAAA
TTTTCAAGCAAATTCTCCTTGACAGGTATAAAAATCCAACGTTAATTAGT
GATTTGAACGCTTCTTTCTATTTCTTAGGCTTCGATTACAATTGGATTTT
ATTTTGGCTTGACTGGATTCGTATATAGCTGTATTCGGCAAAGTAAATGG
AAGTTTGTCGCTATTTTTGCTATCGGTAAGTAAAATTATTTCAACTGCCT
CATTTTCCCGCTTGTTACACCTTGTAATGTTGCTCTAAAAATTTATGCGA
AAGTTTTTGAAACAGGTTACCCCAAATTAAGAGTAACTCTCAGACGGGAA
CTTTAAACACGATACGTAGCCTAGTtaccaaaacaaaatcaaaagttata
aacCGGTTAATCTGGTATTTATTCATACATTTTGTCATTTTAGCTTGGAA
TATGTTTGTGTTGATTTTCAGAACCATTTCTGAATTCGTATACGTTGAAT
TTCGACCAGATTGAGAAGGTAGgcatttttggtaaatttttgtaATGAAC
GAACAATTACCGCTCTGTAATTCAACGTTCTGCGTTCTGCCGCACGCTTA
TACGGTGCGATAATATCAGAAGtcgccgtcaacaagaaactctcataaat
gacGCTCTACGAtttgatacgctcccttatcCGATAAAAATCCAATTCCT
GCTGAAAATGGAATTAGGGAGCTTTAAGCTTTGTGGACGTCACTCCATCG
TCAAAGATTAAGCCTCGATTAAGGGACGCTTTGATCATATTTTGCCACCT
GACCAATACAAGTATTTGACAAACTGACCCGAATTTTCCCTTTAAACCTA
ATAAATAACTAGGAAAAGTGTTCtattttgcgattttttagactttttga
CTTCTTTGGCATTCTTGCAAATGTGTGCCAAGGCCATACTCTTAGGTttt
aaataaacggggggggggttcgaataaacaggggggttggaaaattttct
agattttaataaacggggggggacctaattgccgggggtggaaattgtac
ttctaaaacccaaaaataaggtaaaaataggctaaaatcaggctatctAG
AGCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNctttgacagctgaaaatattcttag
agattaataaacgggggggtcctaataaggtccgggggggttggaaaatt
ttcgaaaaatgaacaagcgggggggccgtttatttggaacctaagagtaa
cgcTACCGGAGGACAGGGGGCTTGACCcctcactttttttaaatgggCAA
AGTCAGTCTGAAATAGCGTGATTTCAAGGCATATTGGAGGATCAAAAACC
ATGGCCCTGTGTACGAGAATATTTTGAGTGATTTgcaggtctgtaaaata
ccaactgGTGGGTGACTTAATAAATTCTACACATTTCCACACAGACCAAT
CTATAATGTTTGCGGTGAAAAACTTTATAACCGTGCTTCAATTTTTCCAT
TTCTCTAGGTTATCTCaagatttgaaacttttttgaaatggtCCGGAATT
TTATCGTTAAAATCTGTATACAGAGTTGATTCATTGGCGCTTGTAAGACC
AATTTGACGCCATGACAATATTTTGGAATCAGCCAAAGATCATCAATGCT
GCTATTGGTTACATGAAGGTGGGCTCCCTGTCACCTAAACACAATAACAG
ACAATATAAAAGCACGCCCTGGGAAGGGATGATATAGAATGACAGAAAGA
AGATCGGGATTTCGAAAGATTATTTGgtgttttgatatgtttttaaGTTA
CTGTTGTAGTGTAGTCTACTTTATGTATTCATGAATTAAAATCCGAAAAT
ACTTT

Coding sequence (CDS) from alignment at sc0000128:312427..315831+

>TCONS_00011458 ID=TCONS_00011458|Name=TCONS_00011458|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0000128:312427..315831+ (Clytia hemisphaerica)
GTTCGGAATGTAGCCGCTGAAGCCATGATTGAGTGTTTTAAGTCGGCGag
gaaaaaatataacagctGGCTTGACATATGGAACAACTTGCCAATATTCC
GTAAAGAAGTCCTTATCGTACTCTCCATTGTGATTGGTACTGTCAATTTT
GGTCTTTCCATCAATGACTTTGTACAATTTGGTGAATTACATCGACCATG
TCATTCTACGTACAGTATTACCACAGAGCTTTTGGCTTCGATTACAATTG
GATTTTATTTTGGCTTGACTGGATTCGTATATAGCTGTATTCGGCAAAGT
AAATGGAAGTTTGTCGCTATTTTTGCTATCGCTTGGAATATGTTTGTGTT
GATTTTCAGAACCATTTCTGAATTCGTATACGTTGAATTTCGACCAGATT
GAGTTCGGAATGTAGCCGCTGAAGCCATGATTGAGTGTTTTAAGTCGGCG
aggaaaaaatataacagctGGCTTGACATATGGAACAACTTGCCAATATT
CCGTAAAGAAGTCCTTATCGTACTCTCCATTGTGATTGGTACTGTCAATT
TTGGTCTTTCCATCAATGACTTTGTACAATTTGGTGAATTACATCGACCA
TGTCATTCTACGTACAGTATTACCACAGAGCTTTTGGCTTCGATTACAAT
TGGATTTTATTTTGGCTTGACTGGATTCGTATATAGCTGTATTCGGCAAA
GTAAATGGAAGTTTGTCGCTATTTTTGCTATCGCTTGGAATATGTTTGTG
TTGATTTTCAGAACCATTTCTGAATTCGTATACGTTGAATTTCGACCAGA
TTGAGTTCGGAATGTAGCCGCTGAAGCCATGATTGAGTGTTTTAAGTCGG
CGaggaaaaaatataacagctGGCTTGACATATGGAACAACTTGCCAATA
TTCCGTAAAGAAGTCCTTATCGTACTCTCCATTGTGATTGGTACTGTCAA
TTTTGGTCTTTCCATCAATGACTTTGTACAATTTGGTGAATTACATCGAC
CATGTCATTCTACGTACAGTATTACCACAGAGCTTTTGGCTTCGATTACA
ATTGGATTTTATTTTGGCTTGACTGGATTCGTATATAGCTGTATTCGGCA
AAGTAAATGGAAGTTTGTCGCTATTTTTGCTATCGCTTGGAATATGTTTG
TGTTGATTTTCAGAACCATTTCTGAATTCGTATACGTTGAATTTCGACCA
GATTGAGTTCGGAATGTAGCCGCTGAAGCCATGATTGAGTGTTTTAAGTC
GGCGaggaaaaaatataacagctGGCTTGACATATGGAACAACTTGCCAA
TATTCCGTAAAGAAGTCCTTATCGTACTCTCCATTGTGATTGGTACTGTC
AATTTTGGTCTTTCCATCAATGACTTTGTACAATTTGGTGAATTACATCG
ACCATGTCATTCTACGTACAGTATTACCACAGAGCTTTTGGCTTCGATTA
CAATTGGATTTTATTTTGGCTTGACTGGATTCGTATATAGCTGTATTCGG
CAAAGTAAATGGAAGTTTGTCGCTATTTTTGCTATCGCTTGGAATATGTT
TGTGTTGATTTTCAGAACCATTTCTGAATTCGTATACGTTGAATTTCGAC
CAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006420XLOC_006420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011458-exon-sc0000128-1491911889:312427..312471TCONS_00011458-exon-sc0000128-1491911889:312427..312471Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1510915933:312427..312471TCONS_00011458-exon-sc0000128-1510915933:312427..312471Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1575043694:312427..312471TCONS_00011458-exon-sc0000128-1575043694:312427..312471Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1491911889:312742..312930TCONS_00011458-exon-sc0000128-1491911889:312742..312930Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1510915933:312742..312930TCONS_00011458-exon-sc0000128-1510915933:312742..312930Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1575043694:312742..312930TCONS_00011458-exon-sc0000128-1575043694:312742..312930Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1491911889:313805..313901TCONS_00011458-exon-sc0000128-1491911889:313805..313901Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1510915933:313805..313901TCONS_00011458-exon-sc0000128-1510915933:313805..313901Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1575043694:313805..313901TCONS_00011458-exon-sc0000128-1575043694:313805..313901Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1491911889:314120..314194TCONS_00011458-exon-sc0000128-1491911889:314120..314194Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1510915933:314120..314194TCONS_00011458-exon-sc0000128-1510915933:314120..314194Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1575043694:314120..314194TCONS_00011458-exon-sc0000128-1575043694:314120..314194Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1491911889:315485..315831TCONS_00011458-exon-sc0000128-1491911889:315485..315831Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1510915933:315485..315831TCONS_00011458-exon-sc0000128-1510915933:315485..315831Clytia hemisphaericaexon
TCONS_00011458-exon-sc0000128-1575043694:315485..315831TCONS_00011458-exon-sc0000128-1575043694:315485..315831Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011458-proteinTCONS_00011458-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:312427..315831 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.087948	0	0.251538	0.313983	0.384696	0.0680727	0.264292	0.260603	0	0	0.481417	0.437152	0	0.10036	0	0	0	0	0	0	0	0.312456	0	0	0	0.073749
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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