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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011424 ID=TCONS_00011424|Name=TCONS_00011424|organism=Clytia hemisphaerica|type=transcript|length=1499bp
tttgcTAAGAAAATTACAACATTCGTTTctagttttaaatttttatttgt
atatTCATTATTAAATACTTGTTTCCCCTAAATCTAACAATCGCTGTAAC
TCGGGAGTCCTTAACCCAACTGAAGAAGATGATCTCCCTTCATCCACATC
TTTATCATTAAGTGCTGATGTCAGCGGTTTTTTAGACTCATCCCCAGTCT
CTTCACCGTCTGATTCGTCTTCTAAATCGTAATGGACAGAGTACCTATTA
TGATAAATAGATTTATCTTGTATCGTAGCTGatgatttctttttattctt
tgttGTGGTGGTAACAttacaattttcatgattaGAAAGCCTTGATCCTT
CTCGTCCAATATCGTTGTGAATGTTTTGCGATGAACTAGAGTCGATTTCA
ACATGATTTGACAAAGAATCTTCGAAGGAGGAATGGAACTCCTCATGTTC
GTTTATAGTAGGTTCTCTTATACCATTTATTGAATCGTCTGTTCGTAAAT
CAACACTGGCTATCGTGGATGCGCACCCAGAGTCACAGCCTGTAGTTGTC
GCGAATGTAGAAACGGAGCTACAAGGGGTAGACAGGCTAGATGCACTACC
TTCCTTGACTGGTAATCCGaaaactttttgttgaaaaaatttactaacAT
TTTCATAGTCAAAATCATCGTAATTTGCTTTCGAAAGTCTCACGCTACCA
TCTTGCATCTTTTTGATTGGATGACGGCTTGGGATTTTATATTCACGTGA
TAATAATAAACCAATTTGATTGGCTGCTGTTTTAGCTGACTCTTTGTTCT
TACATAAACATAAATGACATTCAAGCATGTTCGATTTTGGATTTCCAATA
TAAGGTGATTCATTGTGGTAAAAAATAGCGacaagtttttgatttttagc
gtCAATACACGACATGACAATTCTACGAACGTCATATTCCCGACATTTGT
GATTTTTGCCATCACGTAATAAAACTGCtgtattttcaaaacatatgtAT
ACAATAGGTATTAGATTCTTCTCTAaatcttttttggtttttgataaTAA
TATATGTGCTGCACGTCGAAGTTCGTCCGAATTCGGATCTGCGGCGAATG
TTTGTCCGAGATAATAGGTTGCTATGGTAATTTGATCTGGATCATCACAC
TCAATGTTCGGTgatttattattattgttattcatAAATGAAAAGAAACG
ACGAAAAAATGCCATCTTTTTCGTTGTGGTAAGGTTGTTGCCATGCAAAA
TTTatttactaactttttttttcgtgGTCTAAAAAGAAGATGGTAACCAT
ATATTTAATAGGAAGAAACAAATGAACAAAGAAGGAAAGCAGAAGGAACG
AACTTAAGAAGGAACGAATGAAAGAGCAATCCTGTGCAAAAAATCCACAA
TATGGAAGACATGAATTACATGcacatttttcataagaacataaggcttc
gttggcaaaaatattaaaacaaattaagaatattttaaggctttaagga Run BLAST on NCBI protein sequence of TCONS_00011424-protein >TCONS_00011424-protein ID=TCONS_00011424-protein|Name=TCONS_00011424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MAFFRRFFSFMNNNNNKSPNIECDDPDQITIATYYLGQTFAADPNSDELR
RAAHILLSKTKKDLEKNLIPIVYICFENTAVLLRDGKNHKCREYDVRRIV
MSCIDAKNQKLVAIFYHNESPYIGNPKSNMLECHLCLCKNKESAKTAANQ
IGLLLSREYKIPSRHPIKKMQDGSVRLSKANYDDFDYENVSKFFQQKVFG
LPVKEGSASSLSTPCSSVSTFATTTGCDSGCASTIASVDLRTDDSINGIR
EPTINEHEEFHSSFEDSLSNHVEIDSSSSQNIHNDIGREGSRLSNHENCN
VTTTTKNKKKSSATIQDKSIYHNRYSVHYDLEDESDGEETGDESKKPLTS
ALNDKDVDEGRSSSSVGLRTPELQRLLDLGETSI Run BLAST on NCBI transcript from alignment at sc0000127:558040..559538 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011424 ID=TCONS_00011424|Name=TCONS_00011424|organism=Clytia hemisphaerica|type=transcript|length=1499bp|location=Sequence derived from alignment at sc0000127:558040..559538 (Clytia hemisphaerica)
tccttaaagccttaaaatattcttaatttgttttaatatttttgccaacg
aagccttatgttcttatgaaaaatgtgCATGTAATTCATGTCTTCCATAT
TGTGGATTTTTTGCACAGGATTGCTCTTTCATTCGTTCCTTCTTAAGTTC
GTTCCTTCTGCTTTCCTTCTTTGTTCATTTGTTTCTTCCTATTAAATATA
TGGTTACCATCTTCTTTTTAGACcacgaaaaaaaaagttagtaaatAAAT
TTTGCATGGCAACAACCTTACCACAACGAAAAAGATGGCATTTTTTCGTC
GTTTCTTTTCATTTatgaataacaataataataaatcACCGAACATTGAG
TGTGATGATCCAGATCAAATTACCATAGCAACCTATTATCTCGGACAAAC
ATTCGCCGCAGATCCGAATTCGGACGAACTTCGACGTGCAGCACATATAT
TAttatcaaaaaccaaaaaagattTAGAGAAGAATCTAATACCTATTGTA
TacatatgttttgaaaatacaGCAGTTTTATTACGTGATGGCAAAAATCA
CAAATGTCGGGAATATGACGTTCGTAGAATTGTCATGTCGTGTATTGacg
ctaaaaatcaaaaacttgtCGCTATTTTTTACCACAATGAATCACCTTAT
ATTGGAAATCCAAAATCGAACATGCTTGAATGTCATTTATGTTTATGTAA
GAACAAAGAGTCAGCTAAAACAGCAGCCAATCAAATTGGTTTATTATTAT
CACGTGAATATAAAATCCCAAGCCGTCATCCAATCAAAAAGATGCAAGAT
GGTAGCGTGAGACTTTCGAAAGCAAATTACGATGATTTTGACTATGAAAA
TgttagtaaattttttcaacaaaaagttttCGGATTACCAGTCAAGGAAG
GTAGTGCATCTAGCCTGTCTACCCCTTGTAGCTCCGTTTCTACATTCGCG
ACAACTACAGGCTGTGACTCTGGGTGCGCATCCACGATAGCCAGTGTTGA
TTTACGAACAGACGATTCAATAAATGGTATAAGAGAACCTACTATAAACG
AACATGAGGAGTTCCATTCCTCCTTCGAAGATTCTTTGTCAAATCATGTT
GAAATCGACTCTAGTTCATCGCAAAACATTCACAACGATATTGGACGAGA
AGGATCAAGGCTTTCtaatcatgaaaattgtaaTGTTACCACCACaacaa
agaataaaaagaaatcatCAGCTACGATACAAGATAAATCTATTTATCAT
AATAGGTACTCTGTCCATTACGATTTAGAAGACGAATCAGACGGTGAAGA
GACTGGGGATGAGTCTAAAAAACCGCTGACATCAGCACTTAATGATAAAG
ATGTGGATGAAGGGAGATCATCTTCTTCAGTTGGGTTAAGGACTCCCGAG
TTACAGCGATTGTTAGATTTAGGGGAAACAAGTATTTAATAATGAatata
caaataaaaatttaaaactagAAACGAATGTTGTAATTTTCTTAgcaaa Coding sequence (CDS) from alignment at sc0000127:558040..559538 >TCONS_00011424 ID=TCONS_00011424|Name=TCONS_00011424|organism=Clytia hemisphaerica|type=CDS|length=1155bp|location=Sequence derived from alignment at sc0000127:558040..559538 (Clytia hemisphaerica)
ATGGCATTTTTTCGTCGTTTCTTTTCATTTatgaataacaataataataa
atcACCGAACATTGAGTGTGATGATCCAGATCAAATTACCATAGCAACCT
ATTATCTCGGACAAACATTCGCCGCAGATCCGAATTCGGACGAACTTCGA
CGTGCAGCACATATATTAttatcaaaaaccaaaaaagattTAGAGAAGAA
TCTAATACCTATTGTATacatatgttttgaaaatacaGCAGTTTTATTAC
GTGATGGCAAAAATCACAAATGTCGGGAATATGACGTTCGTAGAATTGTC
ATGTCGTGTATTGacgctaaaaatcaaaaacttgtCGCTATTTTTTACCA
CAATGAATCACCTTATATTGGAAATCCAAAATCGAACATGCTTGAATGTC
ATTTATGTTTATGTAAGAACAAAGAGTCAGCTAAAACAGCAGCCAATCAA
ATTGGTTTATTATTATCACGTGAATATAAAATCCCAAGCCGTCATCCAAT
CAAAAAGATGCAAGATGGTAGCGTGAGACTTTCGAAAGCAAATTACGATG
ATTTTGACTATGAAAATgttagtaaattttttcaacaaaaagttttCGGA
TTACCAGTCAAGGAAGGTAGTGCATCTAGCCTGTCTACCCCTTGTAGCTC
CGTTTCTACATTCGCGACAACTACAGGCTGTGACTCTGGGTGCGCATCCA
CGATAGCCAGTGTTGATTTACGAACAGACGATTCAATAAATGGTATAAGA
GAACCTACTATAAACGAACATGAGGAGTTCCATTCCTCCTTCGAAGATTC
TTTGTCAAATCATGTTGAAATCGACTCTAGTTCATCGCAAAACATTCACA
ACGATATTGGACGAGAAGGATCAAGGCTTTCtaatcatgaaaattgtaaT
GTTACCACCACaacaaagaataaaaagaaatcatCAGCTACGATACAAGA
TAAATCTATTTATCATAATAGGTACTCTGTCCATTACGATTTAGAAGACG
AATCAGACGGTGAAGAGACTGGGGATGAGTCTAAAAAACCGCTGACATCA
GCACTTAATGATAAAGATGTGGATGAAGGGAGATCATCTTCTTCAGTTGG
GTTAAGGACTCCCGAGTTACAGCGATTGTTAGATTTAGGGGAAACAAGTA
TTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011424-exon-sc0000127-1491911889:558040..559538 | TCONS_00011424-exon-sc0000127-1491911889:558040..559538 | Clytia hemisphaerica | exon |
| TCONS_00011424-exon-sc0000127-1510915933:558040..559538 | TCONS_00011424-exon-sc0000127-1510915933:558040..559538 | Clytia hemisphaerica | exon |
| TCONS_00011424-exon-sc0000127-1575043694:558040..559538 | TCONS_00011424-exon-sc0000127-1575043694:558040..559538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:558040..559538 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011993 | PH_dom-like |
Blast
The following BLAST results are available for this feature:
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