TCONS_00011415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011415
Unique NameTCONS_00011415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011415 ID=TCONS_00011415|Name=TCONS_00011415|organism=Clytia hemisphaerica|type=transcript|length=399bp
ATCCATTcttaattcaatcaaaaaattctgtttcaactccaataaataaa
aataattcaacaaATCCCACTATCTAACATATATATAACTTAAATCAATT
CAAATTAACTCTATATATATAAAACTCTAGTATGTACATAAATTCTTACA
ATCTCAAAATNCAATTCAAATTAACTCTATTGATATAAAACTCTAGTATG
TACATAAATTCTTACaatctcaaaattaaaattaaacatAACACCAAGTC
ACTCAAAAGTAGTATGGAAAATTAAACAACAACAGTTAATACTCCCATTT
TACACACCAATAACAAGGTACCATGGAGTtacaaagaaaaacaggagatt
TATGTAATTGTAACCAacctcgccctacgattaaaatagtgacgaggta
Run BLAST on NCBI

transcript from alignment at sc0000127:280088..280486

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011415 ID=TCONS_00011415|Name=TCONS_00011415|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at sc0000127:280088..280486 (Clytia hemisphaerica)
tacctcgtcactattttaatcgtagggcgaggtTGGTTACAATTACATAa
atctcctgtttttctttgtaACTCCATGGTACCTTGTTATTGGTGTGTAA
AATGGGAGTATTAACTGTTGTTGTTTAATTTTCCATACTACTTTTGAGTG
ACTTGGTGTTatgtttaattttaattttgagattGTAAGAATTTATGTAC
ATACTAGAGTTTTATATCAATAGAGTTAATTTGAATTGNATTTTGAGATT
GTAAGAATTTATGTACATACTAGAGTTTTATATATATAGAGTTAATTTGA
ATTGATTTAAGTTATATATATGTTAGATAGTGGGATttgttgaattattt
ttatttattggagttgaaacagaattttttgattgaattaagAATGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006401XLOC_006401Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011415-exon-sc0000127-1491911889:280088..280486TCONS_00011415-exon-sc0000127-1491911889:280088..280486Clytia hemisphaericaexon
TCONS_00011415-exon-sc0000127-1510915933:280088..280486TCONS_00011415-exon-sc0000127-1510915933:280088..280486Clytia hemisphaericaexon
TCONS_00011415-exon-sc0000127-1575043694:280088..280486TCONS_00011415-exon-sc0000127-1575043694:280088..280486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:280088..280486 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.933625	1.82086	0.422839	0.620523	1.00724	0.397966	1.92052	0.674236	0	0.194903	0	0	0.372555	0	0.212057	0	0	0.287347	0.793971	0	0.180536	0	0	0.389287	3.40813	3.2206	0	0.27325	0.20725	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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