TCONS_00011397 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011397
Unique Name	TCONS_00011397
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	748

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000127:409817..414852-

transcript sequence

>TCONS_00011397 ID=TCONS_00011397|Name=TCONS_00011397|organism=Clytia hemisphaerica|type=transcript|length=748bp
CCCTGATGAAGATgttaaaaggatacaggaaaagtgtgtgaTCTAGaaaa
acaatttattcaataagaaaaaaatggggaagaaatcaaaaaagtcaaat
aagCTTGAATCGTTGAAAGCAgcaattgaagaagaagaaaataaagaaga
agagGTCAAGGAAGATGAGCCAAAACTTGTGAAAAAGAGAAAAGGAAAGA
AAGATGTGGCTGCCAAAATGAAGAATTTAGAACTGGGTGAGGATAGAGGT
GCTGAACAATGTTTCGATTACGACAGCGAAGAAGAAACCGAAGAACCAGA
TTATGCTGCTGAAACTGAAGATACTGGGgTGAAAATGTCAcgtaaagaaa
agaagaaagctgCAAAACAGgCAAAATACGCCGCTGAACAAGCTGCAATG
GAAAACGAAAGTCAATTTTCTGTATCACAACAAGAACAAACATCAAAAGC
AGCTGCTATCGAAAATGCAACTGATATTAAGGTAGAAAAATTCAGCATTG
CAGCTAGAGGAAAAGACCTTTTTGTGAATGCAGATTTGACAATTACACAA
GGTCGCCGATATGGTCTTGTTGGTCCTAATGGcatGGGAAAGACAACACT
GCTGGTACATATTGCACGACGTTTGATCAAAATTCCACCCAATATTGATG
TGTTGTTGTGCGAACAAGATATTCAAGTAGATGAAACACCTGCTGTTGAT
ATGGTCTTGAAAGCTGacaaaaaacgtttagaactTCTTGCAGAGGTT

Run BLAST on NCBI

transcript from alignment at sc0000127:409817..414852-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011397 ID=TCONS_00011397|Name=TCONS_00011397|organism=Clytia hemisphaerica|type=transcript|length=5036bp|location=Sequence derived from alignment at sc0000127:409817..414852- (Clytia hemisphaerica)
CCCTGATGAAGATGTTAAAAGGATACAGGAAAAGTGTGTGATCTAGGTAT
AGGAAGTAATTTCTCGATATTACATTCCGATTTTGCCCTTGAAAACAGAA
GCTGATATTCTGTAGAACAGCACAAACTTGTTGAACTAATCTAAATCGCG
ATCCATAATATTTCATGTTATCTAACAGTTTATGCTGTATGTATTTACTT
TTTATTTGGCCTAACCCTGTGTTTGTTCTAAATTCGCACAACAAACTTGC
AAAGCTTGGTTATCTCAGTTGTAAGCATATTTTTCTTACTATCATAGGTC
GGACCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTA
TTTTCACTAAAAAGTGGTATTATATTTGCCAGACTTAATTTTTCTTTACT
GTTTTCCTTCCCTTTTTACCATAAAAAATTTAGCCCGAAACCCTTGGGGG
ATAGGCATTTTTAAAGGTTGGGGGGATGCCAAGAAGGGTGGGGAGCATTT
AAGAAGGGGGGATCAGACCCCTTTCCGCACTATGTCTATACTGTTATTTA
GAAAAACAATTTATTCAATAAGAAAAAAATGGGGAAGAAATCAAAAAAGT
CAAATAAGCTTGAATCGTTGAAAGCAGCAATTGAAGAAGAAGAAAATAAA
GAAGAAGAGGTCAAGGAAGATGAGCCAAAACTTGTGAAAAAGAGAAAAGG
TTGGTTCAAACAGCACTCAATGTGTAGAAATCTGTTTCAGCATGTTTCAT
GTTTTTAATCATTCCCCATTTTGAATCTATTCTTCATCTTACTTCAATTT
GTTCATGGTTCTTCTGTCTAAGTTACAAAAATGAAAATGTAAAAGTAAAA
ATTGTTGAATATATTACAAATTCACAAAAATAAAAATTACAAATTAACAG
GACTGGCTTGAGAGTAAAGAGGAGGATAGGATTAAGGTATGGGAGACCTG
TTGGGAGGAAGTATTTGAAGAAAAAAAAATGAAAAAAAATTTTAGTCTAT
CACTTTTTTAATATAAAAAAATATTAGGAATTTATATTTTTATTATTTCT
TACACATTAATTACCTGTATTTACTGTCTGTATTTATGTTGCTTTTAGGA
AAGAAAGATGTGGCTGCCAAAATGAAGAATTTAGAACTGGGTGAGGATAG
AGGTGCTGAACAATGTTTCGATTACGACAGCGAAGAAGAAACCGAAGAAC
CAGATTATGCTGCTGAAACTGAAGATACTGGGGGTAAATATAATTTTTGT
ATTCTGAGAGGGCTGGTACCGTTTACTGTTAGTTTGCCGTCACCCAACCT
TACATTTTGGAGGTGGGTCTGTCGGTCAGTTAGAAAAATTTATTTTTGAA
GATTTATGAAAATTCAGTTTATATTTAGGTAATTTTGAAGTAAAAACAAA
AGAGCTAGAAATTAGTTCATGATTCTTAAAGTAATATAGAATGAGACAGA
CACAATAGGGGTTTTGATTTGAAGAAAAGTAATTTTCTTTTTTTAAATGG
CCATAGTCCAGCCTTATTTACAGTACTTCTAAAAAGTAATTAAGTCTCCA
AGTAGTTATAGACAGTGCTAAACATTCCAACTTTTTTCTTCACCAGTGAA
AATGTCACGTAAAGAAAAGAAGAAAGCTGCAAAACAGGTACTGATAGTTT
TCTCTTGTGCATTTGTTGCAGAATTTTTGTGTTCTACAGATCTTTCATTA
AAGATCGATCATTCTTATCTGAACAGAAAGCAACCATAGAGGTGTTTGAT
GGTTTACTATCTTCTCTGGTATAATTGAGACTCTCGAAAATAAATGTAAA
TAAATGTTCAAGAAAAGATCTGATTGATCAATAGGAAATACAACAAAGAT
GTAGAAATAATATGTACAAAACACCCTAACTTTTTTGATAATATTTTCAT
TTCAAGGCAAAATACGCCGCTGAACAAGCTGCAATGGAAAACGAAAGTCA
ATTTTCTGTATCACAACAAGAACAAACATCAAAAGCAGCTGCTATCGAAA
ATGCAACTGATATTAAGGTAACTTCTGTTTGGTAGCAAGAAATTTAGTAC
ATTTTTGATTAAGATTTAATCAAATATTGAAGATTTGAAAAAGTTTCAAA
ATCGAAAATTTTTTTCCAAAACACATTTTTTTCAGGTAGAAAAATTCAGC
ATTGCAGCTAGAGGAAAAGACCTTTTTGTGAATGCAGATTTGACAATTAC
ACAAGGTCGCCGATATGGTCTTGTTGGTCCTAATGGGTAAGCAGAAAACT
TTCCACATTCTCAAAGAAGTGAGAACTTCGAATCATCTAATAAATCTTAC
TGTTTGCAATGTGTCGAGACTTAAGTAACAGTTTTCCATTTTTTTAAGTG
CAACCTTACCAAAAATTTAGTAGACTAAATATTTTAATAAAAACCATATG
AAAGGCTAGATTCTTTGNTAAAACTTGTCAGCATTGGCTTAAAACTCACA
TTATCTTTGTTTGCTGTACAGGAGAAACATCTTTTGAAAGCGCTCGAATC
AAAAGACGAGAAGATCAGTGAAGATGCGAACAAACGATTGAAAGTTGTTT
ATGCTGAAATGGAAGCTATCGGTGCTGACAAAGCCGAATCCAAAGCTAGG
CGTATCTTATCTGTAAGAATCGTTTCAACCCTAACACTGTAAGAGGATTG
GATTTCAAGTTTTCCCAGAGTCAAATGATGTCATAATGCATGTCTGTGTG
CTGTGTTGTGAATAAGTGTCGGTGTAGTGAACAGACCTTTTCATAAATTA
CGTCACGAACATCAATTGCCTCGTTTTGAAATTATTGCCATGGTGAATAA
CTACCAGCGAATTTTATTAAAATTACTTCCTATTCATAAACAAATCATTT
AATGTCTCAAGGGACATAATCACCATGATAATTGTTTGAATACGAGGCAA
GTGATGTTCGTGACGTAATTTATAAAAAGGTCTATTAAGCCATTTGACCC
AATTCCCTTTCATTATCGCTTTTGACAGAAAGATTTGATATAAGTGTACC
AGCTGTTAGGCTTAAGTGGTTTACTCTGCCTTTCTTTCCTACTCCCCCTT
TGGTGTCCATAATTTAGAGATCGTCTAGCTGAAGATAAAACAGAATGCTG
AGGAAGCGTTCATTTTATCAAAGTTGAATTATCTATAAAAGTCTCGGAAG
GATTTCCTTCTCAGTGAAGATGTTTGTCCGTCTCAAAATTCAGCATGATT
CACAAAAATTTCAAGAATTTGTGCTAATTTGCAGTATAAAATCTATTTCC
GCTTCAGAGGAAAAACCTTGCTCTGACAATGCTTTATAAAAATTGGTTCA
ATTCAAATCTTTAAGCTGCAATTATAATATTTCAGTTCGAAATTATGCTA
AACTAGGTCATAANATTGAGACTCTCGAAAATAAATGTAAATAAATGTTC
AAGAAAAGATCTGATTGATCAATAGGAAATACAACAAAGATGTAGAAATA
ATATGTACAAAACACCCTAACTTTTTTGATAATATTTTCATTTCAAGGCA
AAATACGCCGCTGAACAAGCTGCAATGGAAAACGAAAGTCAATTTTCTGT
GTCACAACAAGAACAAACATCAAAAGCAGCTGCTATCGAAAATGCAACTG
ATATTAAGGTAACTTCTGTTTGGTAGCAAGAAATTTAGTACATTTTTTAT
TAAGATTTAATCAAATTATTGAAGATTTGAAAAACTTTCAAAATCGAAAA
TTCTTTTCTACACATTTTTTTCAGGTAGAAAAATTCAGCATTGCAGCTAG
AGGAAAAGACCTTTTTGTGAATGCAGATTTGACAATTGCACAAGGTCGCC
GATATGGTCTTGTTGGTCCTAATGGGTAAGCAGAAAACTTTCCACATTCT
CAAAGAAGTGAGAACTTCGAATCATCTAATAAATCTTACTGTTTGCCTAG
TTAGCAATGCGTCGCATGAAGACTTAAGTAACATTTTTCCATTTCTTTTA
GTGCAACCTTACCAAAAATTTATTAGACTAAATATTTTGATAAAAACCAT
ATGAAAGGCTAGATTCTTTCCCCACAGGAAAATATGTAAATACAATTTTC
AACCTAAAAGATTTAAACCTTTTCCATTGGTTAACAAACACTGTGGTTTC
AACTCACATAAAGGCTTTGTTTGTTTAACACATCCTTATCTTCAGAGAGT
TATACCACCTAGTGTTTTCACAGAATTCTGGCGTCATGCAGTTGCAAGAA
TGATGCTTTTCATTAACACTGATCATAATTCCATTTCATTGTTTTTTTTC
TTTCAGCATGGGAAAGACAACACTGCTGGTACATATTGCACGACGTTTGA
TCAAAATTCCACCCAATATTGATGTGTTGTTGTGCGAACAAGGTCAGATT
ATTGCCCATGAGCTATTCACAATATGAACCACTGCAATGACTCTAGAAAT
ATTTATGGAGTTATACTTTGATATAAATTTTGATATTGATGATGATTTCT
TTATGAATAAGTCGAGTCTTGCGCTCAAAGTTTCTCAAAGGTATTACCAC
TTTTTCATTTCCTTTACATAATGATTCGAACAAAGATGACCTTTTTCATT
CAATAGATATTCAAGTAGATGAAACACCTGCTGTTGATATGGTCTTGAAA
GCTGACAAAAAACGTTTAGAACTTCTTGCAGAGGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006390	XLOC_006390	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000127	supercontig	sc0000127:409817..414852 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.07873	5.52213	8.67813	15.7984	0	0	0	0	0	0	0	0	0	0	6.55272e-09	0	0	0	0	0	4.85013	9.06243	0	0	0	0

Blast

[Close]

BLAST of TCONS_00011397 vs. Swiss-Prot (Human)
Match: ABCF1 (ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.226e-46
Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 2

Query:  407 ESQFSVSQQEQTSKAAAIENATDIKVEKFSIAARGKDLFVNADLTITQGRRYGLVGPNGMGKTTLLVHIARRLIKIPPNIDVLLCEQDIQVDETPAVDMVLKADKKRLELLAE 745
            E+ FSVSQ E +S+ A +ENA+DIK+EKFSI+A GK+LFVNADL I  GRRYGLVGPNG GKTTLL HIA R + IPPNIDVLLCEQ++  DETPAV  VL+AD KRL+LL E
Sbjct:  281 ENDFSVSQAEMSSRQAMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEE 393

The following BLAST results are available for this feature:

BLAST of TCONS_00011397 vs. Swiss-Prot (Human)

BLAST of TCONS_00011397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCF1	1.226e-46	70.80	ATP-binding cassette sub-family F member 1 OS=Homo...	[more]

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TCONS_00011397 (transcript) - C. hemisphaerica