|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011395 ID=TCONS_00011395|Name=TCONS_00011395|organism=Clytia hemisphaerica|type=transcript|length=715bp
TACTGTTatttagaaaaacaatttattcaataagaaaaaaatggggaaga
aatcaaaaaagtcaaataagCTTGAATCGTTGAAAGCAgcaattgaagaa
gaagaaaataaagaagaagagGTCAAGGAAGATGAGCCAAAACTTGTGAA
AAAGAGAAAAGGAAAGAAAGATGTGGCTGCCAAAATGAAGAATTTAGAAC
TGGGTGAGGATAGAGGTGCTGAACAATGTTTCGATTACGACAGCGAAGAA
GAAACCGAAGAACCAGATTATGCTGCTGAAACTGAAGATACTGGGgTGAA
AATGTCAcgtaaagaaaagaagaaagctgCAAAACAGgCAAAATACGCCG
CTGAACAAGCTGCAATGGAAAACGAAAGTCAATTTTCTGTATCACAACAA
GAACAAACATCAAAAGCAGCTGCTATCGAAAATGCAACTGATATTAAGGT
AGAAAAATTCAGCATTGCAGCTAGAGGAAAAGACCTTTTTGTGAATGCAG
ATTTGACAATTGCACAAGGTCGCCGATATGGTCTTGTTGGTCCTAATGGc
atGGGAAAGACAACACTGCTGGTACATATTGCACGACGTTTGATCAAAAT
TCCACCCAATATTGATGTGTTGTTGTGCGAACAAGATATTCAAGTAGATG
AAACACCTGCTGTTGATATGGTCTTGAAAGCTGacaaaaaacgtttagaa
ctTCTTGCAGAGGTT Run BLAST on NCBI transcript from alignment at sc0000127:409817..413914- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011395 ID=TCONS_00011395|Name=TCONS_00011395|organism=Clytia hemisphaerica|type=transcript|length=4098bp|location=Sequence derived from alignment at sc0000127:409817..413914- (Clytia hemisphaerica)
TACTGTTATTTAGAAAAACAATTTATTCAATAAGAAAAAAATGGGGAAGA
AATCAAAAAAGTCAAATAAGCTTGAATCGTTGAAAGCAGCAATTGAAGAA
GAAGAAAATAAAGAAGAAGAGGTCAAGGAAGATGAGCCAAAACTTGTGAA
AAAGAGAAAAGGTTGGTTCAAACAGCACTCAATGTGTAGAAATCTGTTTC
AGCATGTTTCATGTTTTTAATCATTCCCCATTTTGAATCTATTCTTCATC
TTACTTCAATTTGTTCATGGTTCTTCTGTCTAAGTTACAAAAATGAAAAT
GTAAAAGTAAAAATTGTTGAATATATTACAAATTCACAAAAATAAAAATT
ACAAATTAACAGGACTGGCTTGAGAGTAAAGAGGAGGATAGGATTAAGGT
ATGGGAGACCTGTTGGGAGGAAGTATTTGAAGAAAAAAAAATGAAAAAAA
ATTTTAGTCTATCACTTTTTTAATATAAAAAAATATTAGGAATTTATATT
TTTATTATTTCTTACACATTAATTACCTGTATTTACTGTCTGTATTTATG
TTGCTTTTAGGAAAGAAAGATGTGGCTGCCAAAATGAAGAATTTAGAACT
GGGTGAGGATAGAGGTGCTGAACAATGTTTCGATTACGACAGCGAAGAAG
AAACCGAAGAACCAGATTATGCTGCTGAAACTGAAGATACTGGGGGTAAA
TATAATTTTTGTATTCTGAGAGGGCTGGTACCGTTTACTGTTAGTTTGCC
GTCACCCAACCTTACATTTTGGAGGTGGGTCTGTCGGTCAGTTAGAAAAA
TTTATTTTTGAAGATTTATGAAAATTCAGTTTATATTTAGGTAATTTTGA
AGTAAAAACAAAAGAGCTAGAAATTAGTTCATGATTCTTAAAGTAATATA
GAATGAGACAGACACAATAGGGGTTTTGATTTGAAGAAAAGTAATTTTCT
TTTTTTAAATGGCCATAGTCCAGCCTTATTTACAGTACTTCTAAAAAGTA
ATTAAGTCTCCAAGTAGTTATAGACAGTGCTAAACATTCCAACTTTTTTC
TTCACCAGTGAAAATGTCACGTAAAGAAAAGAAGAAAGCTGCAAAACAGG
TACTGATAGTTTTCTCTTGTGCATTTGTTGCAGAATTTTTGTGTTCTACA
GATCTTTCATTAAAGATCGATCATTCTTATCTGAACAGAAAGCAACCATA
GAGGTGTTTGATGGTTTACTATCTTCTCTGGTATAATTGAGACTCTCGAA
AATAAATGTAAATAAATGTTCAAGAAAAGATCTGATTGATCAATAGGAAA
TACAACAAAGATGTAGAAATAATATGTACAAAACACCCTAACTTTTTTGA
TAATATTTTCATTTCAAGGCAAAATACGCCGCTGAACAAGCTGCAATGGA
AAACGAAAGTCAATTTTCTGTATCACAACAAGAACAAACATCAAAAGCAG
CTGCTATCGAAAATGCAACTGATATTAAGGTAACTTCTGTTTGGTAGCAA
GAAATTTAGTACATTTTTGATTAAGATTTAATCAAATATTGAAGATTTGA
AAAAGTTTCAAAATCGAAAATTTTTTTCCAAAACACATTTTTTTCAGGTA
GAAAAATTCAGCATTGCAGCTAGAGGAAAAGACCTTTTTGTGAATGCAGA
TTTGACAATTACACAAGGTCGCCGATATGGTCTTGTTGGTCCTAATGGGT
AAGCAGAAAACTTTCCACATTCTCAAAGAAGTGAGAACTTCGAATCATCT
AATAAATCTTACTGTTTGCAATGTGTCGAGACTTAAGTAACAGTTTTCCA
TTTTTTTAAGTGCAACCTTACCAAAAATTTAGTAGACTAAATATTTTAAT
AAAAACCATATGAAAGGCTAGATTCTTTGNTAAAACTTGTCAGCATTGGC
TTAAAACTCACATTATCTTTGTTTGCTGTACAGGAGAAACATCTTTTGAA
AGCGCTCGAATCAAAAGACGAGAAGATCAGTGAAGATGCGAACAAACGAT
TGAAAGTTGTTTATGCTGAAATGGAAGCTATCGGTGCTGACAAAGCCGAA
TCCAAAGCTAGGCGTATCTTATCTGTAAGAATCGTTTCAACCCTAACACT
GTAAGAGGATTGGATTTCAAGTTTTCCCAGAGTCAAATGATGTCATAATG
CATGTCTGTGTGCTGTGTTGTGAATAAGTGTCGGTGTAGTGAACAGACCT
TTTCATAAATTACGTCACGAACATCAATTGCCTCGTTTTGAAATTATTGC
CATGGTGAATAACTACCAGCGAATTTTATTAAAATTACTTCCTATTCATA
AACAAATCATTTAATGTCTCAAGGGACATAATCACCATGATAATTGTTTG
AATACGAGGCAAGTGATGTTCGTGACGTAATTTATAAAAAGGTCTATTAA
GCCATTTGACCCAATTCCCTTTCATTATCGCTTTTGACAGAAAGATTTGA
TATAAGTGTACCAGCTGTTAGGCTTAAGTGGTTTACTCTGCCTTTCTTTC
CTACTCCCCCTTTGGTGTCCATAATTTAGAGATCGTCTAGCTGAAGATAA
AACAGAATGCTGAGGAAGCGTTCATTTTATCAAAGTTGAATTATCTATAA
AAGTCTCGGAAGGATTTCCTTCTCAGTGAAGATGTTTGTCCGTCTCAAAA
TTCAGCATGATTCACAAAAATTTCAAGAATTTGTGCTAATTTGCAGTATA
AAATCTATTTCCGCTTCAGAGGAAAAACCTTGCTCTGACAATGCTTTATA
AAAATTGGTTCAATTCAAATCTTTAAGCTGCAATTATAATATTTCAGTTC
GAAATTATGCTAAACTAGGTCATAANATTGAGACTCTCGAAAATAAATGT
AAATAAATGTTCAAGAAAAGATCTGATTGATCAATAGGAAATACAACAAA
GATGTAGAAATAATATGTACAAAACACCCTAACTTTTTTGATAATATTTT
CATTTCAAGGCAAAATACGCCGCTGAACAAGCTGCAATGGAAAACGAAAG
TCAATTTTCTGTGTCACAACAAGAACAAACATCAAAAGCAGCTGCTATCG
AAAATGCAACTGATATTAAGGTAACTTCTGTTTGGTAGCAAGAAATTTAG
TACATTTTTTATTAAGATTTAATCAAATTATTGAAGATTTGAAAAACTTT
CAAAATCGAAAATTCTTTTCTACACATTTTTTTCAGGTAGAAAAATTCAG
CATTGCAGCTAGAGGAAAAGACCTTTTTGTGAATGCAGATTTGACAATTG
CACAAGGTCGCCGATATGGTCTTGTTGGTCCTAATGGGTAAGCAGAAAAC
TTTCCACATTCTCAAAGAAGTGAGAACTTCGAATCATCTAATAAATCTTA
CTGTTTGCCTAGTTAGCAATGCGTCGCATGAAGACTTAAGTAACATTTTT
CCATTTCTTTTAGTGCAACCTTACCAAAAATTTATTAGACTAAATATTTT
GATAAAAACCATATGAAAGGCTAGATTCTTTCCCCACAGGAAAATATGTA
AATACAATTTTCAACCTAAAAGATTTAAACCTTTTCCATTGGTTAACAAA
CACTGTGGTTTCAACTCACATAAAGGCTTTGTTTGTTTAACACATCCTTA
TCTTCAGAGAGTTATACCACCTAGTGTTTTCACAGAATTCTGGCGTCATG
CAGTTGCAAGAATGATGCTTTTCATTAACACTGATCATAATTCCATTTCA
TTGTTTTTTTTCTTTCAGCATGGGAAAGACAACACTGCTGGTACATATTG
CACGACGTTTGATCAAAATTCCACCCAATATTGATGTGTTGTTGTGCGAA
CAAGGTCAGATTATTGCCCATGAGCTATTCACAATATGAACCACTGCAAT
GACTCTAGAAATATTTATGGAGTTATACTTTGATATAAATTTTGATATTG
ATGATGATTTCTTTATGAATAAGTCGAGTCTTGCGCTCAAAGTTTCTCAA
AGGTATTACCACTTTTTCATTTCCTTTACATAATGATTCGAACAAAGATG
ACCTTTTTCATTCAATAGATATTCAAGTAGATGAAACACCTGCTGTTGAT
ATGGTCTTGAAAGCTGACAAAAAACGTTTAGAACTTCTTGCAGAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011395-exon-sc0000127-1575043694:413754..413914 | TCONS_00011395-exon-sc0000127-1575043694:413754..413914 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1575043694:413220..413354 | TCONS_00011395-exon-sc0000127-1575043694:413220..413354 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1575043694:412816..412856 | TCONS_00011395-exon-sc0000127-1575043694:412816..412856 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1575043694:412436..412546 | TCONS_00011395-exon-sc0000127-1575043694:412436..412546 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1575043694:410628..410728 | TCONS_00011395-exon-sc0000127-1575043694:410628..410728 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1575043694:410111..410196 | TCONS_00011395-exon-sc0000127-1575043694:410111..410196 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1575043694:409817..409896 | TCONS_00011395-exon-sc0000127-1575043694:409817..409896 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1510915933:413754..413914 | TCONS_00011395-exon-sc0000127-1510915933:413754..413914 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1510915933:413220..413354 | TCONS_00011395-exon-sc0000127-1510915933:413220..413354 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1510915933:412816..412856 | TCONS_00011395-exon-sc0000127-1510915933:412816..412856 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1510915933:412436..412546 | TCONS_00011395-exon-sc0000127-1510915933:412436..412546 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1510915933:410628..410728 | TCONS_00011395-exon-sc0000127-1510915933:410628..410728 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1510915933:410111..410196 | TCONS_00011395-exon-sc0000127-1510915933:410111..410196 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1510915933:409817..409896 | TCONS_00011395-exon-sc0000127-1510915933:409817..409896 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1491911889:413754..413914 | TCONS_00011395-exon-sc0000127-1491911889:413754..413914 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1491911889:413220..413354 | TCONS_00011395-exon-sc0000127-1491911889:413220..413354 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1491911889:412816..412856 | TCONS_00011395-exon-sc0000127-1491911889:412816..412856 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1491911889:412436..412546 | TCONS_00011395-exon-sc0000127-1491911889:412436..412546 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1491911889:410628..410728 | TCONS_00011395-exon-sc0000127-1491911889:410628..410728 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1491911889:410111..410196 | TCONS_00011395-exon-sc0000127-1491911889:410111..410196 | Clytia hemisphaerica | exon |
| TCONS_00011395-exon-sc0000127-1491911889:409817..409896 | TCONS_00011395-exon-sc0000127-1491911889:409817..409896 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:409817..413914 - |
Blast
BLAST of TCONS_00011395 vs. Swiss-Prot (Human)
Match: ABCF1 (ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 1.063e-46 Identity = 80/113 (70.80%), Postives = 93/113 (82.30%), Query Frame = 2
Query: 374 ESQFSVSQQEQTSKAAAIENATDIKVEKFSIAARGKDLFVNADLTIAQGRRYGLVGPNGMGKTTLLVHIARRLIKIPPNIDVLLCEQDIQVDETPAVDMVLKADKKRLELLAE 712
E+ FSVSQ E +S+ A +ENA+DIK+EKFSI+A GK+LFVNADL I GRRYGLVGPNG GKTTLL HIA R + IPPNIDVLLCEQ++ DETPAV VL+AD KRL+LL E
Sbjct: 281 ENDFSVSQAEMSSRQAMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLKLLEE 393
The following BLAST results are available for this feature:
|
