TCONS_00011389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011389
Unique NameTCONS_00011389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length840

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011389 ID=TCONS_00011389|Name=TCONS_00011389|organism=Clytia hemisphaerica|type=transcript|length=840bp
ATTATtatgacttaaaaacaaaaattaaccGGCATATCACTCATCTTCAA
AAATTACCTTctaggaagaaaaaaaagcaACAAATTATTACAAAAATGAA
GTTGGTTACCTGCTTGATACTTTTATCTTCGTTGGCACAGTTAACGGACG
GTCTTTCATGTTTTTGTCAAATGGTAACATGTCCACCGGCGCCCACGGAT
TGTCCAGTTGGTTTAACCATGGATGTTTGTGGATGCTGTGAGGTTTGTGC
TAGAGATATTTATCAAACATGCGATGGAATATGGGGTTCGGAGGGAACAT
GCGGTGAAAATCTTTACTGCGATAAAGAAGAACATAGAGGAGCTGAAATG
TTTGGAGCTATTGGTATTTGTAAACCTGACAATACTGTTCCAATCAAGCC
AAACAAAGAACAACTTGAAAAGATGAATCCATCAGATTACCAACCCAATG
ATATTTTTCCCGGACATTTACCATGATAAAATTAATCCTCGAACATGGAC
AGGTGTGCTTATTGTAATGTTGTTAAATTTTGCATtgtatatttattatt
tttaaagaattgatacttattttttgttttgttttcttttttttaagtaa
TACACATctttaaaaatgattatttggttaaaattgacttaaaaccTGAA
TTTTTATCCAATCCTTATATCCAAGTCTGTCATATTTAAAGACATCACTC
TTAGATGCGAAACAAACACCTCCACTTGTCACATATGCCGCGTGAAAACA
AGAAACGCAATAGATTTAATCCTTAAGGGTTCCTTTTCAAAGCTTccaaa
agtgcactgtaaggggcgaaatgagcaaagatgagaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00011389-protein

>TCONS_00011389-protein ID=TCONS_00011389-protein|Name=TCONS_00011389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
YYDLKTKINRHITHLQKLPSRKKKKQQIITKMKLVTCLILLSSLAQLTDG
LSCFCQMVTCPPAPTDCPVGLTMDVCGCCEVCARDIYQTCDGIWGSEGTC
GENLYCDKEEHRGAEMFGAIGICKPDNTVPIKPNKEQLEKMNPSDYQPND
IFPGHLP
Run BLAST on NCBI

transcript from alignment at sc0000127:324691..328873-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011389 ID=TCONS_00011389|Name=TCONS_00011389|organism=Clytia hemisphaerica|type=transcript|length=4183bp|location=Sequence derived from alignment at sc0000127:324691..328873- (Clytia hemisphaerica)
ATTATTATGACTTAAAAACAAAAATTAACCGGCATATCACTCATCTTCAA
AAATTACCTTCTAGGAAGAAAAAAAAGCAACAAATTATTACAAAAATGAA
GTTGGTTACCTGCTTGATACTTTTATCTTCGTTGGCACAGTTAACGGACG
GTCTTTCATGTTTTTGTCAAATGGTAACATGTCCACCGGCGCCCACGGAT
TGTCCAGGTCAGTTGTATTCCTCTGTTTGTCCAACATTCCCAAATCCTTG
AAAGATATGAAAAATCACGTACAATGAACATACGCTTGGTTTCAAAAGAA
TCAGTAAAGTTTTGACATGCCTCAACTTGTTGTCATTTTCCAGTCTGAAC
TGTAAATATTGTTTCTTATTCATGATATGCACCATTGCAATGCATTCTTA
CATTACATCACGGACTCAATAGCTGATTGGTTGTAAGTGACGTAAAATCA
GTCAATACGTCACTTTCAACCAATCAGCTGCTGAGTTCGTGGAAGACATT
GCAATGGTGCATATCATGAATACAACAAAATTCATTTTTGAGACGAATAA
TTCTTTTGCAAAATCTGCTGGAGCCTAGGATGGCACCATACTCTCATGAA
AAAAATCAGAAAAAATTAATGATCCATTTTTCAAGTCCAAAAAATCCTTA
TTTAGTCGTTTTCAGCTGAAAATTTAGCAAAGCATAATTTTTTTCGGTCG
TATTTAAGGGTTTATAGTTATGTACTTTCGTGCGAAAAATCAAGAAATCT
CAAAANTTTTCGGTCGTATTTGAGGGTTTCTAGTTATGTACTTTCGTGCG
AAAAATCAAGAAATCTCAAAAAAAGCTTATGAATGACGAAAAACTAACTA
ATAAACATGACTAAATTTATAGGACCTTCAGGTAGGTCCAAAATATCGTC
ACAATTAATACTAAGGTAGGCGGGTGTACTCAGACATACGGGTACCCAAT
GGGCACAAACATCTTTTGGACGTCTAATGTACGTTTCTAGGACGTCCATA
GGTCTTAAAGCCGTCCATCGAATGTCCATAAGACGTTGCGTGACCATGGG
GTAGTTTGAGTATTTGATGGGATGGATGGAGCCTCTTTTGAAAGAATCAT
AGCAACGTCAAGAGAGACAGTGGTCATAACATAAACAAACGCAGAGGTAT
GGCGAAACCACAGCAATGCTACTGGTTAATTGTCTAACGTCCAGAAGACG
TTTTTTGTACGCACACAAATGACCGAATGACAGATTATACCGGAATTTCA
GAAATTTCTTCTGATTGACAACCATCATAGACAAATAAACCAGACATGAA
CTTATGTTAGACTTAAGAAACATAAATTGAAGGCTCTTCTAGAAAAAAAT
TTGTACCACTCTTTGGGATATGGCGAAGCAACGAACACCTTGAATCTCTT
TACTGACATAAAGTCCTCATCTAAATCGATACTAAGCCCAATGTACATGG
TCTCTTATAAAAATGCACGACTTGCCTCATGGGAATCTCTAGCATAAGGC
GCTTCAATACACCTTTTCGACCGTAGCCGCCAATTGCCGCGCGGGCATTT
TTTTGTCCGTTTTACCACCCTAAAACCGTCCCAGTCTTTTTTCACACCTA
TAGGCAATAGAAAAAGGTGTCAAAAAAGTATTGGATCGAGTTTAGGGGAA
AAAATGCCCGCGCGGCAATTGGCGGCTACGGTCGAAAAAGTGTATTCTTT
GATATACGTTTTTATCTCGGTGGAAATTTGACGATTTTCCGATTTTCAGA
GCAAAAAAAACGAGTAAAAATTCCAAGGATTATGACAATTTAAAAGACTT
CCATTATAACTGATAAGGTCAGTTTCCTCTGTACTTTAAGGGACTAAAAA
TATATATTAAATTACAACTTTGATATTTTTTCCTTAGTTGGTTTAACCAT
GGATGTTTGTGGATGCTGTGAGGTTTGTGCTAGAGATATTTATCAAACAT
GCGATGGAATATGGGGTTCGGAGGGAACATGCGGTGAAAATCTTTACTGC
GATAAAGAAGAACATAGAGGAGCTGAAATGTTTGGAGCTATTGGTATTTG
TAAACCTGACAGTAAGTCGCTTTTATTATTATTTTTTTATCCCAAACTCG
TACCCAGTGCCTTAGAATGTATTTTGATCGCTCTGATGAAGTTAAGTTCA
ACACCGAGTTTTGACGAGAATTAAGGGTTAATTTAGAAGAAATTAATGAA
GAAGCTTAGTTTTTGAAAGGGACTAAAAAAACTTTTTTTATTTTTGTGAG
AAATATTTTTCGAACCCATTCACTTTTGCAGCTGATTGGCTGACTAGTAT
AAAGTTTATTGGCTTCAAAATTGATAAGTCACACATTATGGAGCACTAGT
GATTTTGGTCAATACAGAGAGCTAAACAACACCATTAACAAGATAAACAA
CCATACTTTTCCGTGGAGCCAGAAACAATCTTAAGTTGTTTACTTTTGAC
AAAGTTATCTTTGACTAATTTCTGGATATCTGTCTTAAATGACAGGTTAT
TTTCCTTTTCTTGTGTAATATCCAATATAACAAAGCGTCAATTGAAAATT
AGACCTTATTGTTCTTATCGGGTTTGTAGGGGTTCGAAATACCGTTTTTC
CCGCTTTATCCCGGAGTCCCGGACATTAAAAAAACAAAAAGGATAATTAC
CATCAACGTTTGATTTTTTTAAATCTCGTAATACCGTACTAAAAATGGGC
CACTCCCGTCACACCGTAAAAGTACTACCCCCTCCATATATGAGTATGAT
CTATCGCTGAGCTAGAAAATGGACTTGCTGTTACTCGATCATCTTTTTTT
ACCAGACCCGACTTTAATGGACATTTCCGCTGTCATTTTCTGCCCTTGTT
TGAGGGCTTATTCTTAACTACAGTTGACGATCTCTAATTCGACGTTCTAC
TATTCGATACGCTCCGTTTTTCGATAATATTGAAAGTCACAGTCAACAAG
AAACTCTTATAAGCGACGCCTTACCTTATTCGATGAAAATCCGGGGGTGG
GTATGCTTATACAAAACAGGTGACGGGTATAAGCGAGCCATAAGGTACCC
TTTTTCATACCTCAAAAGTCAATCAAAGGGGTACATATTCATAGGCTAGT
CTCTCAAAAGTTTTCCAAAATCACTAAAATCGAAAATTTCCCTCTCAAAT
AAAGGGATCGATTTTTAATTTTTGGCTCGGACATACTCGTCACCTTGCAA
ACCCAGTACCCCCTGGATAAAAATCCAAATTCCCCTTGAACATTCGAATT
AGAGAGCGTCGACTGTATGTTTATTTTTTTTAAATTGGAAATTTTGGTGA
CTGTGGTAACCATTTTAAATAAAGCAAAGCAAATCTTGAAACAATGTGTT
TTCTGAGAATGCATACTTACTTAAATTTTATATCCTTTACCTTTCCCGAA
ACCTATTTGTTATGGCCTTTGTAAACGTTTTTCTTTTATATTTTAAAAAG
AACATTCTTGGATTTTAAAAAGTTTTGAAACTTTCAGATGTTCTTAACTT
TTTGAATTTTAAGCCTAAAAATGCTCTTATTTTCACCATATCGTGGGCAA
TTTGGCCGCTTTCCAAAGAAATCGGGTGTTTTAGTGTCCACGAAGTCTTA
AAATATTCTTAACTTACTATTCTTAATACTTTGGCAACCGAAACCTTGTG
TTCTTATATAGTTTGTTCTTATATAACAAATCGTGTACTGGACTTCATTT
ATAAACCTATAGTTCTACTTTCAGATACTGTTCCAATCAAGCCAAACAAA
GAACAACTTGAAAAGATGAATCCATCAGATTACCAACCCAATGATATTTT
TCCCGGACATTTACCATGATAAAATTAATCCTCGAACATGGACAGGTGTG
CTTATTGTAATGTTGTTAAATTTTGCATTGTATATTTATTATTTTTAAAG
AATTGATACTTATTTTTTGTTTTGTTTTCTTTTTTTTAAGTAATACACAT
CTTTAAAAATGATTATTTGGTTAAAATTGACTTAAAACCTGAATTTTTAT
CCAATCCTTATATCCAAGTCTGTCATATTTAAAGACATCACTCTTAGATG
CGAAACAAACACCTCCACTTGTCACATATGCCGCGTGAAAACAAGAAACG
CAATAGATTTAATCCTTAAGGGTTCCTTTTCAAAGCTTCCAAAAGTGCAC
TGTAAGGGGCGAAATGAGCAAAGATGAGAAAAA

Coding sequence (CDS) from alignment at sc0000127:324691..328873-

>TCONS_00011389 ID=TCONS_00011389|Name=TCONS_00011389|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000127:324691..328873- (Clytia hemisphaerica)
ATACTGTTCCAATCAAGCCAAACAAAGAACAACTTGAAAAGATGAATCCA
TCAGATTACCAACCCAATGATATTTTTCCCGGACATTTACCATGATTGGT
TTAACCATGGATGTTTGTGGATGCTGTGAGGTTTGTGCTAGAGATATTTA
TCAAACATGCGATGGAATATGGGGTTCGGAGGGAACATGCGGTGAAAATC
TTTACTGCGATAAAGAAGAACATAGAGGAGCTGAAATGTTTGGAGCTATT
GGTATTTGTAAACCTGACATATTATGACTTAAAAACAAAAATTAACCGGC
ATATCACTCATCTTCAAAAATTACCTTCTAGGAAGAAAAAAAAGCAACAA
ATTATTACAAAAATGAAGTTGGTTACCTGCTTGATACTTTTATCTTCGTT
GGCACAGTTAACGGACGGTCTTTCATGTTTTTGTCAAATGGTAACATGTC
CACCGGCGCCCACGGATTGTCCAGATACTGTTCCAATCAAGCCAAACAAA
GAACAACTTGAAAAGATGAATCCATCAGATTACCAACCCAATGATATTTT
TCCCGGACATTTACCATGATTGGTTTAACCATGGATGTTTGTGGATGCTG
TGAGGTTTGTGCTAGAGATATTTATCAAACATGCGATGGAATATGGGGTT
CGGAGGGAACATGCGGTGAAAATCTTTACTGCGATAAAGAAGAACATAGA
GGAGCTGAAATGTTTGGAGCTATTGGTATTTGTAAACCTGACATATTATG
ACTTAAAAACAAAAATTAACCGGCATATCACTCATCTTCAAAAATTACCT
TCTAGGAAGAAAAAAAAGCAACAAATTATTACAAAAATGAAGTTGGTTAC
CTGCTTGATACTTTTATCTTCGTTGGCACAGTTAACGGACGGTCTTTCAT
GTTTTTGTCAAATGGTAACATGTCCACCGGCGCCCACGGATTGTCCAGAT
ACTGTTCCAATCAAGCCAAACAAAGAACAACTTGAAAAGATGAATCCATC
AGATTACCAACCCAATGATATTTTTCCCGGACATTTACCATGATTGGTTT
AACCATGGATGTTTGTGGATGCTGTGAGGTTTGTGCTAGAGATATTTATC
AAACATGCGATGGAATATGGGGTTCGGAGGGAACATGCGGTGAAAATCTT
TACTGCGATAAAGAAGAACATAGAGGAGCTGAAATGTTTGGAGCTATTGG
TATTTGTAAACCTGACATATTATGACTTAAAAACAAAAATTAACCGGCAT
ATCACTCATCTTCAAAAATTACCTTCTAGGAAGAAAAAAAAGCAACAAAT
TATTACAAAAATGAAGTTGGTTACCTGCTTGATACTTTTATCTTCGTTGG
CACAGTTAACGGACGGTCTTTCATGTTTTTGTCAAATGGTAACATGTCCA
CCGGCGCCCACGGATTGTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006386XLOC_006386Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011389-proteinTCONS_00011389-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011389-exon-sc0000127-1575043694:328667..328873TCONS_00011389-exon-sc0000127-1575043694:328667..328873Clytia hemisphaericaexon
TCONS_00011389-exon-sc0000127-1575043694:326813..326986TCONS_00011389-exon-sc0000127-1575043694:326813..326986Clytia hemisphaericaexon
TCONS_00011389-exon-sc0000127-1575043694:324691..325149TCONS_00011389-exon-sc0000127-1575043694:324691..325149Clytia hemisphaericaexon
TCONS_00011389-exon-sc0000127-1510915933:328667..328873TCONS_00011389-exon-sc0000127-1510915933:328667..328873Clytia hemisphaericaexon
TCONS_00011389-exon-sc0000127-1510915933:326813..326986TCONS_00011389-exon-sc0000127-1510915933:326813..326986Clytia hemisphaericaexon
TCONS_00011389-exon-sc0000127-1510915933:324691..325149TCONS_00011389-exon-sc0000127-1510915933:324691..325149Clytia hemisphaericaexon
TCONS_00011389-exon-sc0000127-1491911889:328667..328873TCONS_00011389-exon-sc0000127-1491911889:328667..328873Clytia hemisphaericaexon
TCONS_00011389-exon-sc0000127-1491911889:326813..326986TCONS_00011389-exon-sc0000127-1491911889:326813..326986Clytia hemisphaericaexon
TCONS_00011389-exon-sc0000127-1491911889:324691..325149TCONS_00011389-exon-sc0000127-1491911889:324691..325149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:324691..328873 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.49797	2.90588	2.29177	2.80268	0	0	12.65	15.2264	104.803	97.3618	36.1716	54.4455	44.1614	30.8336	49.4537	70.5791	13.8019	54.6392	70.347	86.8096	38.1072	40.6482	34.4249	37.2753	63.0824	50.912	18.3486	28.6327	260.041	252.606
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000867IGFBP-like
IPR009030Growth_fac_rcpt_
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0001558regulation of cell growth
Vocabulary: Molecular Function
TermDefinition
GO:0005520insulin-like growth factor binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001558 regulation of cell growth
cellular_component GO:0005576 extracellular region
molecular_function GO:0005520 insulin-like growth factor binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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