TCONS_00011384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011384
Unique NameTCONS_00011384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011384 ID=TCONS_00011384|Name=TCONS_00011384|organism=Clytia hemisphaerica|type=transcript|length=726bp
CTAGAATATTTTGATCATCATATCGAAGTTCAAATACTCGGATCACTCAC
ATCTCATCATGAAGGTTTTCATCGTCTTAGCTCTTTGCGCtgCTTCTTAC
GCCCTCGAGGTCGAAAAGATCACTGGTACCACACCACCAGCTGTCCCATG
CCCAGACTCCCTCTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTACT
ACTATGGTCAATACAGAAGCAACTATTTCGTCCAATGCTCAAATGGATTA
GCTGCCTGTCAACCATGTTTCCCATTGTCTTTGGAATTCAGTCAATCATG
CAACCAATGTCTTTACAGCAAACAAGATGATTGTGTTACCACACAACCAT
GGGAACCAGCAACCACTTTGAAATGCACTGATATTTGCCCAACACGAGGA
CCTGAATTCAGTGGCAACCTTGAAGATCCACACAGTCCATTCCAATACAT
CGCCTGCTGGAAGGGAGTCACTGTAGGATGTGTTGCTTGCCCAAGTGGTT
TAAAATTCAACGAGAGATGGAATGCCTGTTTATTTGATGGTATCTACAAA
ACTGCCCCATCTCACTAAATTCTTTGATATTCCTAAATCGAGGCTTTTTG
GATATTGTCCTCaatcaaaaacgaaaattttgTAACATTTGATAGAATTT
TTAAAACCATTGCATTTAATCAACCTTTTTTTGAATATACCTGATACACA
CTCCCAATAAAAGCTTAGCAAATtgt
Run BLAST on NCBI

transcript from alignment at sc0000127:230948..233394-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011384 ID=TCONS_00011384|Name=TCONS_00011384|organism=Clytia hemisphaerica|type=transcript|length=2447bp|location=Sequence derived from alignment at sc0000127:230948..233394- (Clytia hemisphaerica)
CTAGAATATTTTGATCATCATATCGAAGTTCAAATACTCGGATCACTCAC
ATCTCATCATGAAGGTTTTCATCGTCTTAGCTCTTTGCGCTGGTAAGAAA
CTTTTTTTTTTCTTTATCCATCTATCGTTCATATCAACCATATTGTTGTC
AAATGATTTTGCTACTATTTTTGCGTTTTTTGTAACGGTGTATTATTGTT
ATTTATTGGCATTTTGTAGCAGTTTTTTTTGGATGATAACGGAAAGTTCA
AAGGTAGCGTATGGAGCATAGACATACGTCCATACTCTTATAAATCTTTT
CTATCATTTCTTTTATAGCTTCTTACGCCCTCGAGGTCGAAAAGATCACT
GGTACCACACCACCAGCTGTCCCATGCCCAGACTCCCTCTGCAAAGGAAA
AGCTGACGGAAACTTCGAATACTACTACTATGGTCAATACAGAAGCAACT
ATTTCGTCCAATGCTCAAATGGATTAGCTGCCTGTCAACCATGTTTCCCA
TTGTCTTTGGAATTCAGTCAATCATGCAACCAATGTCTTTACAGCAAACA
AGGTAAAAAATACTTGAGAAACTTGGTAAACTACACTTCACATAAGACCC
TTTACCCCTTCCTAAAAAGTTCCAAATTAATTTTAACCAATCACTTTTTT
AAATTTGAAAATTTTTTCTTTCTATATGACCCTATTCATAAGTTTTTAGA
TGCAATGAGTATCAAAATCTCAATCTAAAAACCTCATCCCTAAGAAGATC
CATTTTAATATCAGTCCCATATATATTTTTGAAATTTGAAAAAGTTTTTG
TAAAAGCTTCTCTATCTGAAAAGTTAGAGTCCTGTAATTCAAAAGCTTGC
ACAACTGAAGTCCCAAACCCAATTCACCCACACAACGTCCTTTCAACGTT
TTTCCAATATTCACAACGTCTATATAACGTTAGATGAACGTTGAAACAAC
GTTGTGTGTCAGCTGGGCGTATACTCTCAGGTGCCTAATAAACGGGGGGA
GGTTGGAAAAAACGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGAAAACGAATTCAGTCAATAATTTAA
TACAAATATTCGCTAAAATTTATCCACGCGAAATTTTTTGAAATCGTGAT
TCGCTAAAATAAATCCAATAAAAAATCGATTTTTCTGACTCGCTAATATA
CGCTAAAATTAGTCTCGCTAAAATTTCTACGATTAAAGTACACTTAATTA
TAAATTAAAGCAAATTTTTGACCTATTGTTATTTCTTTTTTCCTTAGATG
ATTGTGTTACCACACAACCATGGGAACCAGCAACCACTTTGAAATGCACT
GATATTTGCCCAACACGAGGACCTGAATTCAGTGGCAACCTTGAAGATCC
ACACAGTCCATTCCAATACATCGCCTGCTGGAAGGGAGTCACTGTAGGAT
GTGTTGCTTGCCCAAGTGGTTTAAAATTCAACGAGAGATGGAATGCCTGT
TTATTTGATGGTATCTACAAAACTGCCCCATCTCACTAAATTCTTTGATA
TTCCTAAATCGAGGCTTTTTGGATATTGTCCTCAATCAAAAACGAAAATT
TTGTAACATTTGATAGAATTTTTAAAACCATTGCATTTAATCAACCTTTT
TTTGAATATACCTGATACACACTCCCAATAAAAGCTTAGCAAATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006384XLOC_006384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011384-exon-sc0000127-1575043694:233303..233394TCONS_00011384-exon-sc0000127-1575043694:233303..233394Clytia hemisphaericaexon
TCONS_00011384-exon-sc0000127-1575043694:232843..233076TCONS_00011384-exon-sc0000127-1575043694:232843..233076Clytia hemisphaericaexon
TCONS_00011384-exon-sc0000127-1575043694:230948..231347TCONS_00011384-exon-sc0000127-1575043694:230948..231347Clytia hemisphaericaexon
TCONS_00011384-exon-sc0000127-1510915933:233303..233394TCONS_00011384-exon-sc0000127-1510915933:233303..233394Clytia hemisphaericaexon
TCONS_00011384-exon-sc0000127-1510915933:232843..233076TCONS_00011384-exon-sc0000127-1510915933:232843..233076Clytia hemisphaericaexon
TCONS_00011384-exon-sc0000127-1510915933:230948..231347TCONS_00011384-exon-sc0000127-1510915933:230948..231347Clytia hemisphaericaexon
TCONS_00011384-exon-sc0000127-1491911889:233303..233394TCONS_00011384-exon-sc0000127-1491911889:233303..233394Clytia hemisphaericaexon
TCONS_00011384-exon-sc0000127-1491911889:232843..233076TCONS_00011384-exon-sc0000127-1491911889:232843..233076Clytia hemisphaericaexon
TCONS_00011384-exon-sc0000127-1491911889:230948..231347TCONS_00011384-exon-sc0000127-1491911889:230948..231347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:230948..233394 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.092541	0.0731272	0	0	0	0	0	0.0542721	0.751394	48.2401	405.601	54.5159	3.78945	0	0	0	0	0	0	0	0.193997	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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