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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011361 ID=TCONS_00011361|Name=TCONS_00011361|organism=Clytia hemisphaerica|type=transcript|length=1375bp
TTTCAATTACGGTTTAAAGTAGCTTGGTTCGTTTAAACTTATACACTTTT
CAGATTTAATCAGATGCAAAAACTAGATTTCATTGCGATATAAAGAATTG
AAATACACAATGTCACTTGTAAAGCATCCATTACAACGACGCAGCTCTTC
CAAACTCAGTGTTGCTAAAATCGAGAGTGTATCATTATCACATGGTCATA
AGAAAGATGATTCGAGTCTTTTTCACGTCACCAACAGTTTATTACCGACG
ACGACCAAAATTAAGAAAATCCGACGTCGTACGACAGAAGAGGATCTCGA
AAATCACAGACACGAACATTTAAAGAAAGGTTTATTAATGGTTCACAGTA
ATGAAAGTATCTTTTCTTCATCTTCCTTACCTGATACAGATCCTCATGAC
TTGATGCGCGATTATCTTGGCCGCCGACGTCGCTCGAACACCTTACCTGA
ACCAGTAGGTCCTGTTCTATTAGCGCCCGTTTCGCTGTTGACCGCTCACC
AAAAAACAAGAAGTCATGAATTTTCGACCACGTCATCAGCAGCAGTTGAC
GTAATATCACGTAAAGAATTTTCATCTTCgacagaaaaaatcaaacccAT
AAGTTTAAACATCGAACGTAAATCTAAGAGTGTGAAAAAACTACGCGAGT
TAGTTGGAAAAGTGTTACGTAAAAATTTAGAACATTGTCGATATGATGCT
AAAAAGTCGCGCAAAAGGTGTACACATTTGAGTCAGATATTAGAAACGAC
ACTGAAATCAAGTTTAAATTCTGGTGAGTTTGAATATAAAGTCGTGGCTT
TGGTTTATATCGGGGAATTTCGGGATGACGGTATGAAGCAGTcgtgtcaa
tatttttgtaatcCGGTATCCGATTTATGTGTGATGGAGCACTATCGGGG
TGAAGATATGTTTGCGACAGGGATTGTCTTCGCGACGTTAGTGGAAAGTC
AAAAACAATACTTGGTACCTTCTTATAATAACCTGCAATCGTCGAGACGA
GACCCTGTAATGGTTTAGCTTGGTGATTGGATATCAAAAGAGGCAAACTT
CAAACAGGTCATATATCAGGAATTTGTTCAGACGTGTTTAAGTAAAAGGA
GGGAGGACACAATTTTGCAAAAGACGTTGTATAAAAACCTTACTTAAGGG
AGCTAATTTTGAGGAGAACCATTTTTTGACGAAATTTGCCAAAACTTTTG
GCAAATCTATTGTGaatgtttttagatttcgaaATTTCCTAATACATGTT
TCTGctcctatatcaggctcgcattatgcttagcattctattgcaTTTTA
AATTATGACCAATAGActaattcttttcaaattttggaggtattttcttg
tttttattatagtttctaaactttg Run BLAST on NCBI protein sequence of TCONS_00011361-protein >TCONS_00011361-protein ID=TCONS_00011361-protein|Name=TCONS_00011361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MSLVKHPLQRRSSSKLSVAKIESVSLSHGHKKDDSSLFHVTNSLLPTTTK
IKKIRRRTTEEDLENHRHEHLKKGLLMVHSNESIFSSSSLPDTDPHDLMR
DYLGRRRRSNTLPEPVGPVLLAPVSLLTAHQKTRSHEFSTTSSAAVDVIS
RKEFSSSTEKIKPISLNIERKSKSVKKLRELVGKVLRKNLEHCRYDAKKS
RKRCTHLSQILETTLKSSLNSGEFEYKVVALVYIGEFRDDGMKQSCQYFC
NPVSDLCVMEHYRGEDMFATGIVFATLVESQKQYLVPSYNNLQSSRRDPV
MV Run BLAST on NCBI transcript from alignment at sc0000127:452238..454390+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011361 ID=TCONS_00011361|Name=TCONS_00011361|organism=Clytia hemisphaerica|type=transcript|length=2153bp|location=Sequence derived from alignment at sc0000127:452238..454390+ (Clytia hemisphaerica)
TTTCAATTACGGTTTAAAGTAGCTTGGTTCGTTTAAACTTATACACTTTT
CAGATTTAATCAGATGCAAAAACTAGATTTCATTGCGATATAAAGAATTG
AAATACACAATGTCACTTGTAAAGGTATGTATGTGAATGATACTTAATTT
CCATATTCTCCCTTTTTTCTGacagatatttttcaaaaccttCAGGTCTT
TATCCACTGGAAAGATTCGTTTTCATTCTGATTGAGAAAACTCCGAAAGT
TTAACCCATTGTAATACTGTACTTAGCTGTCACACTCATCAGGAGAGGCT
GTGTGGTTGTAACTCgggaggggggtactaggtttgcgagttGACgggta
tgtccgagcaaaaaatcgaaaatcgataCCCTTAGAGAGGGGAAAAACTG
GCGTTTTTGGGACTCTTAGAGTTTCTCAAAATCTTTGCCGTTTTGTACTc
gatttttatccaatttttttaaaataacgACCCTTTCAGAGAGGAAATTt
agattttcgtgaattttggacCNCCCCCGGGATTGTAAGAAGAATCCCTA
CTTGACTTTTGAGATAAACATATACAGTGATCTCGCTAATTGGAACTAGA
ACGGAGAATTTTATAtgttcaaattacagagagatttgaattatGGAAAG
GAAtaagttcaaattatagaagaATTCGAGTGATAGGCAGCTCTAACCAG
GTCACAGAGGCAGGGGAGCTCTATGGAATGAATAAAGGAGATGTGAACTT
TGGTTGTGTTACTGCCAATGTCGAGTATTCAAATATGAATAtgtaaaaga
ttaataaaagtTAGTCTAATATACCCCTAGTTTTCAATCTGaatcataaa
atttcaaattattatcCTCAATATatgttttaattgcattttaaCTTTAT
AGCATCCATTACAACGACGCAGCTCTTCCAAACTCAGTGTTGCTAAAATC
GAGAGTGTATCATTATCACATGGTCATAAGAAAGATGATTCGAGTCTTTT
TCACGTCACCAACAGTTTATTACCGACGACGACCAAAATTAAGAAAATCC
GACGTCGTACGACAGAAGAGGATCTCGAAAATCACAGACACGAACATTTA
AAGAAAGGTTTATTAATGGTTCACAGTAATGAAAGTATCTTTTCTTCATC
TTCCTTACCTGATACAGATCCTCATGACTTGATGCGCGATTATCTTGGCC
GCCGACGTCGCTCGAACACCTTACCTGAACCAGTAGGTCCTGTTCTATTA
GCGCCCGTTTCGCTGTTGACCGCTCACCAAAAAACAAGAAGTCATGAATT
TTCGACCACGTCATCAGCAGCAGTTGACGTAATATCACGTAAAGAATTTT
CATCTTCgacagaaaaaatcaaacccATAAGTTTAAACATCGAACGTAAA
TCTAAGAGTGTGAAAAAACTACGCGAGTTAGTTGGAAAAGTGTTACGTAA
AAATTTAGAACATTGTCGATATGATGCTAAAAAGTCGCGCAAAAGGTGTA
CACATTTGAGTCAGATATTAGAAACGACACTGAAATCAAGTTTAAATTCT
GGTGAGTTTGAATATAAAGTCGTGGCTTTGGTTTATATCGGGGAATTTCG
GGATGACGGTATGAAGCAGTcgtgtcaatatttttgtaatcCGGTATCCG
ATTTATGTGTGATGGAGCACTATCGGGGTGAAGATATGTTTGCGACAGGG
ATTGTCTTCGCGACGTTAGTGGAAAGTCAAAAACAATACTTGGTACCTTC
TTATAATAACCTGCAATCGTCGAGACGAGACCCTGTAATGGTTTAGCTTG
GTGATTGGATATCAAAAGAGGCAAACTTCAAACAGGTCATATATCAGGAA
TTTGTTCAGACGTGTTTAAGTAAAAGGAGGGAGGACACAATTTTGCAAAA
GACGTTGTATAAAAACCTTACTTAAGGGAGCTAATTTTGAGGAGAACCAT
TTTTTGACGAAATTTGCCAAAACTTTTGGCAAATCTATTGTGaatgtttt
tagatttcgaaATTTCCTAATACATGTTTCTGctcctatatcaggctcgc
attatgcttagcattctattgcaTTTTAAATTATGACCAATAGActaatt
cttttcaaattttggaggtattttcttgtttttattatagtttctaaact
ttg Coding sequence (CDS) from alignment at sc0000127:452238..454390+ >TCONS_00011361 ID=TCONS_00011361|Name=TCONS_00011361|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at sc0000127:452238..454390+ (Clytia hemisphaerica)
ATGTCACTTGTAAAGCATCCATTACAACGACGCAGCTCTTCCAAACTCAG
TGTTGCTAAAATCGAGAGTGTATCATTATCACATGGTCATAAGAAAGATG
ATTCGAGTCTTTTTCACGTCACCAACAGTTTATTACCGACGACGACCAAA
ATTAAGAAAATCCGACGTCGTACGACAGAAGAGGATCTCGAAAATCACAG
ACACGAACATTTAAAGAAAGGTTTATTAATGGTTCACAGTAATGAAAGTA
TCTTTTCTTCATCTTCCTTACCTGATACAGATCCTCATGACTTGATGCGC
GATTATCTTGGCCGCCGACGTCGCTCGAACACCTTACCTGAACCAGTAGG
TCCTGTTCTATTAGCGCCCGTTTCGCTGTTGACCGCTCACCAAAAAACAA
GAAGTCATGAATTTTCGACCACGTCATCAGCAGCAGTTGACGTAATATCA
CGTAAAGAATTTTCATCTTCgacagaaaaaatcaaacccATAAGTTTAAA
CATCGAACGTAAATCTAAGAGTGTGAAAAAACTACGCGAGTTAGTTGGAA
AAGTGTTACGTAAAAATTTAGAACATTGTCGATATGATGCTAAAAAGTCG
CGCAAAAGGTGTACACATTTGAGTCAGATATTAGAAACGACACTGAAATC
AAGTTTAAATTCTGGTGAGTTTGAATATAAAGTCGTGGCTTTGGTTTATA
TCGGGGAATTTCGGGATGACGGTATGAAGCAGTcgtgtcaatatttttgt
aatcCGGTATCCGATTTATGTGTGATGGAGCACTATCGGGGTGAAGATAT
GTTTGCGACAGGGATTGTCTTCGCGACGTTAGTGGAAAGTCAAAAACAAT
ACTTGGTACCTTCTTATAATAACCTGCAATCGTCGAGACGAGACCCTGTA
ATGGTTTAGATGTCACTTGTAAAGCATCCATTACAACGACGCAGCTCTTC
CAAACTCAGTGTTGCTAAAATCGAGAGTGTATCATTATCACATGGTCATA
AGAAAGATGATTCGAGTCTTTTTCACGTCACCAACAGTTTATTACCGACG
ACGACCAAAATTAAGAAAATCCGACGTCGTACGACAGAAGAGGATCTCGA
AAATCACAGACACGAACATTTAAAGAAAGGTTTATTAATGGTTCACAGTA
ATGAAAGTATCTTTTCTTCATCTTCCTTACCTGATACAGATCCTCATGAC
TTGATGCGCGATTATCTTGGCCGCCGACGTCGCTCGAACACCTTACCTGA
ACCAGTAGGTCCTGTTCTATTAGCGCCCGTTTCGCTGTTGACCGCTCACC
AAAAAACAAGAAGTCATGAATTTTCGACCACGTCATCAGCAGCAGTTGAC
GTAATATCACGTAAAGAATTTTCATCTTCgacagaaaaaatcaaacccAT
AAGTTTAAACATCGAACGTAAATCTAAGAGTGTGAAAAAACTACGCGAGT
TAGTTGGAAAAGTGTTACGTAAAAATTTAGAACATTGTCGATATGATGCT
AAAAAGTCGCGCAAAAGGTGTACACATTTGAGTCAGATATTAGAAACGAC
ACTGAAATCAAGTTTAAATTCTGGTGAGTTTGAATATAAAGTCGTGGCTT
TGGTTTATATCGGGGAATTTCGGGATGACGGTATGAAGCAGTcgtgtcaa
tatttttgtaatcCGGTATCCGATTTATGTGTGATGGAGCACTATCGGGG
TGAAGATATGTTTGCGACAGGGATTGTCTTCGCGACGTTAGTGGAAAGTC
AAAAACAATACTTGGTACCTTCTTATAATAACCTGCAATCGTCGAGACGA
GACCCTGTAATGGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011361-exon-sc0000127-1491911889:452238..452361 | TCONS_00011361-exon-sc0000127-1491911889:452238..452361 | Clytia hemisphaerica | exon |
| TCONS_00011361-exon-sc0000127-1510915933:452238..452361 | TCONS_00011361-exon-sc0000127-1510915933:452238..452361 | Clytia hemisphaerica | exon |
| TCONS_00011361-exon-sc0000127-1575043694:452238..452361 | TCONS_00011361-exon-sc0000127-1575043694:452238..452361 | Clytia hemisphaerica | exon |
| TCONS_00011361-exon-sc0000127-1491911889:453140..454390 | TCONS_00011361-exon-sc0000127-1491911889:453140..454390 | Clytia hemisphaerica | exon |
| TCONS_00011361-exon-sc0000127-1510915933:453140..454390 | TCONS_00011361-exon-sc0000127-1510915933:453140..454390 | Clytia hemisphaerica | exon |
| TCONS_00011361-exon-sc0000127-1575043694:453140..454390 | TCONS_00011361-exon-sc0000127-1575043694:453140..454390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000127 | supercontig | sc0000127:452238..454390 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005334 | Tctex |
Blast
The following BLAST results are available for this feature:
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